Experiment: benzoic 0.58 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_5880 and Pf1N1B4_5881 overlap by 11 nucleotides Pf1N1B4_5881 and Pf1N1B4_5882 are separated by 1 nucleotides
Pf1N1B4_5880 - AttH component of AttEFGH ABC transport system, at 320,101 to 321,174
_5880
Pf1N1B4_5881 - AttF component of AttEFGH ABC transport system / AttG component of AttEFGH ABC transport system, at 321,164 to 323,635
_5881
Pf1N1B4_5882 - AttE component of AttEFGH ABC transport system, at 323,637 to 324,305
_5882
Position (kb) 321
322
323
324 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 320.372 kb on + strand, within Pf1N1B4_5880 at 320.522 kb on + strand, within Pf1N1B4_5880 at 320.523 kb on - strand at 320.576 kb on + strand, within Pf1N1B4_5880 at 320.984 kb on + strand, within Pf1N1B4_5880 at 320.984 kb on + strand at 320.984 kb on + strand, within Pf1N1B4_5880 at 321.063 kb on + strand at 321.165 kb on + strand at 321.296 kb on + strand at 321.453 kb on - strand, within Pf1N1B4_5881 at 321.975 kb on + strand, within Pf1N1B4_5881 at 321.975 kb on + strand, within Pf1N1B4_5881 at 321.976 kb on - strand, within Pf1N1B4_5881 at 322.128 kb on + strand, within Pf1N1B4_5881 at 322.207 kb on + strand, within Pf1N1B4_5881 at 322.208 kb on - strand, within Pf1N1B4_5881 at 322.424 kb on + strand, within Pf1N1B4_5881 at 322.656 kb on + strand, within Pf1N1B4_5881 at 322.657 kb on - strand, within Pf1N1B4_5881 at 323.190 kb on - strand, within Pf1N1B4_5881 at 323.859 kb on + strand, within Pf1N1B4_5882 at 323.860 kb on - strand, within Pf1N1B4_5882 at 324.275 kb on - strand at 324.336 kb on - strand at 324.369 kb on + strand at 324.472 kb on - strand at 324.476 kb on - strand at 324.476 kb on - strand at 324.476 kb on - strand at 324.497 kb on + strand at 324.497 kb on + strand at 324.497 kb on + strand at 324.498 kb on - strand at 324.498 kb on - strand at 324.498 kb on - strand at 324.498 kb on - strand at 324.501 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction benzoic 0.58 mg/ml remove 320,372 + Pf1N1B4_5880 0.25 +1.4 320,522 + Pf1N1B4_5880 0.39 +0.3 320,523 - +0.7 320,576 + Pf1N1B4_5880 0.44 +0.7 320,984 + Pf1N1B4_5880 0.82 -0.3 320,984 + -0.9 320,984 + Pf1N1B4_5880 0.82 +1.7 321,063 + +1.3 321,165 + -0.8 321,296 + +0.6 321,453 - Pf1N1B4_5881 0.12 +0.1 321,975 + Pf1N1B4_5881 0.33 -2.3 321,975 + Pf1N1B4_5881 0.33 -1.6 321,976 - Pf1N1B4_5881 0.33 -1.3 322,128 + Pf1N1B4_5881 0.39 -1.0 322,207 + Pf1N1B4_5881 0.42 +0.5 322,208 - Pf1N1B4_5881 0.42 +0.7 322,424 + Pf1N1B4_5881 0.51 -1.2 322,656 + Pf1N1B4_5881 0.60 -3.1 322,657 - Pf1N1B4_5881 0.60 -0.4 323,190 - Pf1N1B4_5881 0.82 +0.1 323,859 + Pf1N1B4_5882 0.33 +0.0 323,860 - Pf1N1B4_5882 0.33 -1.1 324,275 - +0.3 324,336 - +0.5 324,369 + -0.9 324,472 - +0.4 324,476 - +1.2 324,476 - -0.6 324,476 - -0.5 324,497 + +0.0 324,497 + -0.3 324,497 + -0.0 324,498 - -2.3 324,498 - -0.3 324,498 - +0.3 324,498 - -0.6 324,501 + +0.7
Or see this region's nucleotide sequence