Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_5791

Experiment: benzoic 0.58 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_5791 and Pf1N1B4_5792 are separated by 74 nucleotidesPf1N1B4_5792 and Pf1N1B4_5793 are separated by 99 nucleotides Pf1N1B4_5791 - hypothetical protein, at 229,111 to 229,446 _5791 Pf1N1B4_5792 - hypothetical protein, at 229,521 to 229,757 _5792 Pf1N1B4_5793 - Protein RtcB, at 229,857 to 231,083 _5793 Position (kb) 229 230Strain fitness (log2 ratio) -2 -1 0 1 2at 228.127 kb on + strandat 228.127 kb on + strandat 228.148 kb on + strandat 228.149 kb on - strandat 228.170 kb on + strandat 228.171 kb on - strandat 228.178 kb on + strandat 228.185 kb on - strandat 228.272 kb on + strandat 228.273 kb on - strandat 228.334 kb on + strandat 228.334 kb on + strandat 228.334 kb on + strandat 228.334 kb on + strandat 228.334 kb on + strandat 228.334 kb on + strandat 228.335 kb on - strandat 228.335 kb on - strandat 228.335 kb on - strandat 228.335 kb on - strandat 228.335 kb on - strandat 228.335 kb on - strandat 228.346 kb on - strandat 228.346 kb on - strandat 228.346 kb on - strandat 228.367 kb on + strandat 228.367 kb on + strandat 228.367 kb on + strandat 228.422 kb on + strandat 228.423 kb on - strandat 228.423 kb on - strandat 228.605 kb on + strandat 228.606 kb on - strandat 228.606 kb on - strandat 228.665 kb on - strandat 229.095 kb on - strandat 229.095 kb on - strandat 229.095 kb on - strandat 229.095 kb on - strandat 229.173 kb on - strand, within Pf1N1B4_5791at 229.306 kb on + strandat 229.316 kb on - strand, within Pf1N1B4_5791at 229.362 kb on + strand, within Pf1N1B4_5791at 229.522 kb on + strandat 229.522 kb on + strandat 229.524 kb on + strandat 229.592 kb on - strand, within Pf1N1B4_5792at 229.592 kb on - strandat 229.609 kb on + strand, within Pf1N1B4_5792at 229.797 kb on - strandat 229.896 kb on + strandat 229.896 kb on + strandat 229.897 kb on - strandat 229.897 kb on - strandat 229.921 kb on + strandat 229.922 kb on - strandat 229.922 kb on - strandat 229.945 kb on + strandat 229.946 kb on - strandat 229.946 kb on - strandat 229.946 kb on - strandat 230.236 kb on + strand, within Pf1N1B4_5793at 230.236 kb on + strand, within Pf1N1B4_5793at 230.237 kb on - strand, within Pf1N1B4_5793at 230.237 kb on - strand, within Pf1N1B4_5793at 230.237 kb on - strand, within Pf1N1B4_5793at 230.377 kb on + strandat 230.377 kb on + strand, within Pf1N1B4_5793

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Per-strain Table

Position Strand Gene LocusTag Fraction benzoic 0.58 mg/ml
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228,127 + -0.7
228,127 + -1.7
228,148 + -0.1
228,149 - +2.6
228,170 + -1.3
228,171 - -0.9
228,178 + -0.1
228,185 - -1.4
228,272 + +0.1
228,273 - +1.2
228,334 + +1.2
228,334 + -1.2
228,334 + +0.1
228,334 + +1.2
228,334 + +1.1
228,334 + -0.9
228,335 - +0.4
228,335 - -0.2
228,335 - -0.5
228,335 - +0.2
228,335 - +1.1
228,335 - +0.6
228,346 - -0.2
228,346 - +0.6
228,346 - -0.9
228,367 + -0.5
228,367 + +1.6
228,367 + -0.8
228,422 + -0.4
228,423 - +0.4
228,423 - -0.6
228,605 + -0.4
228,606 - -1.4
228,606 - +0.1
228,665 - +0.2
229,095 - -0.1
229,095 - +0.1
229,095 - +0.1
229,095 - +0.2
229,173 - Pf1N1B4_5791 0.18 -1.9
229,306 + +0.6
229,316 - Pf1N1B4_5791 0.61 -0.9
229,362 + Pf1N1B4_5791 0.75 -1.5
229,522 + -0.7
229,522 + -0.2
229,524 + -1.2
229,592 - Pf1N1B4_5792 0.30 -0.4
229,592 - +0.6
229,609 + Pf1N1B4_5792 0.37 -1.1
229,797 - -2.5
229,896 + +1.6
229,896 + -0.1
229,897 - +1.2
229,897 - -1.4
229,921 + +0.1
229,922 - +0.1
229,922 - -0.6
229,945 + -1.2
229,946 - +0.4
229,946 - -0.2
229,946 - -0.7
230,236 + Pf1N1B4_5793 0.31 -0.9
230,236 + Pf1N1B4_5793 0.31 -0.9
230,237 - Pf1N1B4_5793 0.31 +0.5
230,237 - Pf1N1B4_5793 0.31 -0.1
230,237 - Pf1N1B4_5793 0.31 -0.5
230,377 + +0.6
230,377 + Pf1N1B4_5793 0.42 +0.4

Or see this region's nucleotide sequence