Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_5663

Experiment: benzoic 0.58 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_5661 and Pf1N1B4_5662 are separated by 156 nucleotidesPf1N1B4_5662 and Pf1N1B4_5663 are separated by 6 nucleotidesPf1N1B4_5663 and Pf1N1B4_5664 are separated by 191 nucleotidesPf1N1B4_5664 and Pf1N1B4_5665 are separated by 291 nucleotides Pf1N1B4_5661 - 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13), at 93,044 to 96,754 _5661 Pf1N1B4_5662 - FIG00953703: hypothetical protein, at 96,911 to 97,132 _5662 Pf1N1B4_5663 - Periplasmic sugar-binding domain protein, at 97,139 to 98,149 _5663 Pf1N1B4_5664 - hypothetical protein, at 98,341 to 98,454 _5664 Pf1N1B4_5665 - Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2), at 98,746 to 100,404 _5665 Position (kb) 97 98 99Strain fitness (log2 ratio) -2 -1 0 1 2at 96.224 kb on + strand, within Pf1N1B4_5661at 96.302 kb on + strand, within Pf1N1B4_5661at 96.302 kb on + strand, within Pf1N1B4_5661at 96.302 kb on + strand, within Pf1N1B4_5661at 96.379 kb on + strand, within Pf1N1B4_5661at 96.386 kb on + strandat 96.386 kb on + strandat 96.386 kb on + strandat 96.443 kb on + strandat 96.443 kb on + strandat 96.443 kb on + strandat 96.443 kb on + strandat 96.443 kb on + strandat 96.443 kb on + strandat 96.443 kb on + strandat 96.444 kb on - strandat 96.444 kb on - strandat 96.444 kb on - strandat 96.444 kb on - strandat 96.578 kb on + strandat 96.614 kb on + strandat 96.615 kb on - strandat 96.615 kb on - strandat 96.639 kb on - strandat 96.680 kb on + strandat 96.680 kb on + strandat 96.680 kb on + strandat 96.680 kb on + strandat 96.680 kb on + strandat 96.680 kb on + strandat 96.680 kb on + strandat 96.753 kb on - strandat 96.868 kb on + strandat 96.869 kb on - strandat 96.869 kb on - strandat 97.075 kb on - strand, within Pf1N1B4_5662at 97.444 kb on + strand, within Pf1N1B4_5663at 97.498 kb on - strand, within Pf1N1B4_5663at 97.789 kb on - strand, within Pf1N1B4_5663at 97.789 kb on - strand, within Pf1N1B4_5663at 97.789 kb on - strand, within Pf1N1B4_5663at 97.837 kb on - strand, within Pf1N1B4_5663at 97.950 kb on + strand, within Pf1N1B4_5663at 97.950 kb on + strand, within Pf1N1B4_5663at 98.103 kb on + strandat 98.192 kb on + strandat 98.208 kb on + strandat 98.209 kb on - strandat 98.209 kb on - strandat 98.260 kb on - strandat 98.260 kb on - strandat 98.342 kb on + strandat 98.343 kb on - strandat 98.609 kb on - strandat 98.622 kb on + strandat 98.623 kb on - strandat 98.623 kb on - strandat 98.709 kb on + strandat 98.710 kb on - strandat 98.710 kb on - strandat 98.743 kb on + strandat 98.743 kb on + strandat 98.743 kb on + strandat 98.743 kb on + strandat 98.743 kb on + strandat 98.743 kb on + strandat 98.743 kb on + strandat 98.743 kb on + strandat 98.743 kb on + strandat 98.744 kb on - strandat 98.744 kb on - strandat 98.744 kb on - strandat 98.744 kb on - strandat 98.744 kb on - strandat 98.744 kb on - strandat 98.744 kb on - strandat 98.744 kb on - strandat 98.744 kb on - strandat 98.745 kb on + strandat 98.745 kb on + strandat 98.745 kb on + strandat 98.745 kb on + strandat 98.745 kb on + strandat 98.745 kb on + strandat 98.745 kb on + strandat 98.745 kb on + strandat 98.746 kb on - strandat 98.746 kb on - strandat 98.746 kb on - strandat 98.746 kb on - strandat 98.746 kb on - strandat 98.746 kb on - strandat 98.746 kb on - strandat 98.746 kb on - strandat 98.746 kb on - strandat 98.746 kb on - strandat 98.746 kb on - strandat 98.746 kb on - strandat 98.746 kb on - strandat 98.746 kb on - strandat 98.746 kb on - strandat 98.749 kb on + strandat 98.749 kb on + strandat 98.749 kb on + strandat 98.750 kb on - strandat 98.750 kb on - strandat 98.750 kb on - strandat 98.750 kb on - strandat 98.750 kb on - strandat 98.750 kb on - strandat 98.750 kb on - strandat 98.750 kb on - strandat 98.753 kb on + strandat 98.753 kb on + strandat 98.753 kb on + strandat 98.754 kb on - strandat 98.754 kb on - strandat 98.754 kb on - strandat 98.754 kb on - strandat 98.754 kb on - strandat 98.755 kb on + strandat 98.756 kb on - strandat 98.756 kb on - strandat 98.764 kb on + strandat 98.881 kb on + strandat 98.881 kb on + strandat 98.882 kb on - strandat 98.882 kb on - strandat 98.882 kb on - strandat 98.882 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction benzoic 0.58 mg/ml
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96,224 + Pf1N1B4_5661 0.86 +0.9
96,302 + Pf1N1B4_5661 0.88 +0.3
96,302 + Pf1N1B4_5661 0.88 +1.9
96,302 + Pf1N1B4_5661 0.88 -0.5
96,379 + Pf1N1B4_5661 0.90 +1.3
96,386 + -0.3
96,386 + +0.6
96,386 + -0.8
96,443 + +0.1
96,443 + -0.4
96,443 + +2.2
96,443 + +0.2
96,443 + -0.9
96,443 + +1.1
96,443 + -1.9
96,444 - +0.5
96,444 - -0.0
96,444 - -0.7
96,444 - +0.6
96,578 + +0.9
96,614 + -0.7
96,615 - +0.7
96,615 - +0.3
96,639 - -0.4
96,680 + +0.3
96,680 + +0.6
96,680 + +1.6
96,680 + +0.6
96,680 + -0.2
96,680 + -1.5
96,680 + +0.4
96,753 - -1.4
96,868 + -0.0
96,869 - +0.6
96,869 - -0.2
97,075 - Pf1N1B4_5662 0.74 -0.2
97,444 + Pf1N1B4_5663 0.30 +0.1
97,498 - Pf1N1B4_5663 0.36 -1.4
97,789 - Pf1N1B4_5663 0.64 -0.8
97,789 - Pf1N1B4_5663 0.64 -0.7
97,789 - Pf1N1B4_5663 0.64 -1.9
97,837 - Pf1N1B4_5663 0.69 -0.9
97,950 + Pf1N1B4_5663 0.80 -1.9
97,950 + Pf1N1B4_5663 0.80 +1.4
98,103 + +1.1
98,192 + -0.0
98,208 + -0.4
98,209 - +0.6
98,209 - -0.5
98,260 - -0.4
98,260 - +1.4
98,342 + +0.3
98,343 - -0.9
98,609 - +1.5
98,622 + -0.3
98,623 - +1.4
98,623 - -0.4
98,709 + +1.0
98,710 - +0.1
98,710 - -0.1
98,743 + +0.6
98,743 + -0.2
98,743 + -0.2
98,743 + +1.2
98,743 + +1.1
98,743 + -0.9
98,743 + +0.6
98,743 + +0.8
98,743 + +0.4
98,744 - -0.2
98,744 - -1.6
98,744 - +1.4
98,744 - +0.6
98,744 - +0.6
98,744 - +1.1
98,744 - -1.9
98,744 - +1.2
98,744 - -0.4
98,745 + +0.2
98,745 + +1.6
98,745 + -0.4
98,745 + -1.7
98,745 + -0.9
98,745 + -0.5
98,745 + -1.4
98,745 + -1.4
98,746 - +1.6
98,746 - -2.2
98,746 - -0.1
98,746 - -0.1
98,746 - -0.2
98,746 - +0.1
98,746 - -0.6
98,746 - +0.4
98,746 - +2.6
98,746 - +0.8
98,746 - -1.4
98,746 - -0.7
98,746 - -1.4
98,746 - -0.4
98,746 - +0.4
98,749 + -0.4
98,749 + +0.5
98,749 + -0.7
98,750 - -0.5
98,750 - +0.4
98,750 - -1.4
98,750 - +1.2
98,750 - -0.5
98,750 - -0.1
98,750 - +1.2
98,750 - +0.1
98,753 + +0.1
98,753 + -1.7
98,753 + +0.3
98,754 - -1.6
98,754 - +1.1
98,754 - -0.2
98,754 - +1.6
98,754 - +0.6
98,755 + -0.6
98,756 - -0.4
98,756 - +0.5
98,764 + -0.6
98,881 + +0.3
98,881 + +2.6
98,882 - -0.9
98,882 - -0.8
98,882 - +0.1
98,882 - +0.5

Or see this region's nucleotide sequence