Experiment: benzoic 0.58 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_5490 and Pf1N1B4_5491 are separated by 335 nucleotides Pf1N1B4_5491 and Pf1N1B4_5492 are separated by 34 nucleotides Pf1N1B4_5492 and Pf1N1B4_5493 are separated by 91 nucleotides Pf1N1B4_5493 and Pf1N1B4_5494 are separated by 96 nucleotides
Pf1N1B4_5490 - hypothetical protein, at 237,805 to 238,038
_5490
Pf1N1B4_5491 - hypothetical protein, at 238,374 to 238,607
_5491
Pf1N1B4_5492 - hypothetical protein, at 238,642 to 238,875
_5492
Pf1N1B4_5493 - hypothetical protein, at 238,967 to 239,542
_5493
Pf1N1B4_5494 - Helicase IV (EC 3.6.1.-), at 239,639 to 242,071
_5494
Position (kb) 238
239 Strain fitness (log2 ratio) -2
-1
0
1
2 at 237.647 kb on - strand at 237.663 kb on + strand at 237.663 kb on + strand at 237.663 kb on + strand at 237.663 kb on + strand at 237.664 kb on - strand at 237.664 kb on - strand at 237.664 kb on - strand at 237.664 kb on - strand at 237.710 kb on + strand at 237.710 kb on + strand at 237.710 kb on + strand at 237.711 kb on - strand at 237.711 kb on - strand at 237.711 kb on - strand at 237.711 kb on - strand at 237.722 kb on + strand at 237.722 kb on + strand at 237.723 kb on - strand at 237.723 kb on - strand at 237.742 kb on + strand at 237.742 kb on + strand at 237.742 kb on + strand at 237.743 kb on - strand at 237.743 kb on - strand at 237.762 kb on - strand at 237.842 kb on + strand at 237.842 kb on + strand, within Pf1N1B4_5490 at 237.842 kb on + strand, within Pf1N1B4_5490 at 237.843 kb on - strand, within Pf1N1B4_5490 at 237.843 kb on - strand, within Pf1N1B4_5490 at 237.843 kb on - strand, within Pf1N1B4_5490 at 237.848 kb on + strand, within Pf1N1B4_5490 at 237.848 kb on + strand, within Pf1N1B4_5490 at 237.848 kb on + strand, within Pf1N1B4_5490 at 237.849 kb on - strand, within Pf1N1B4_5490 at 237.849 kb on - strand, within Pf1N1B4_5490 at 237.854 kb on + strand at 237.855 kb on - strand, within Pf1N1B4_5490 at 237.896 kb on + strand, within Pf1N1B4_5490 at 237.896 kb on + strand, within Pf1N1B4_5490 at 237.908 kb on + strand, within Pf1N1B4_5490 at 237.909 kb on - strand, within Pf1N1B4_5490 at 237.909 kb on - strand, within Pf1N1B4_5490 at 237.942 kb on + strand, within Pf1N1B4_5490 at 237.943 kb on - strand, within Pf1N1B4_5490 at 238.020 kb on + strand at 238.020 kb on + strand at 238.020 kb on + strand at 238.020 kb on + strand at 238.020 kb on + strand at 238.021 kb on - strand at 238.036 kb on + strand at 238.036 kb on + strand at 238.036 kb on + strand at 238.036 kb on + strand at 238.036 kb on + strand at 238.074 kb on + strand at 238.074 kb on + strand at 238.074 kb on + strand at 238.075 kb on - strand at 238.075 kb on - strand at 238.075 kb on - strand at 238.105 kb on + strand at 238.171 kb on + strand at 238.234 kb on + strand at 238.281 kb on + strand at 238.281 kb on + strand at 238.281 kb on + strand at 238.281 kb on + strand at 238.282 kb on - strand at 238.282 kb on - strand at 238.282 kb on - strand at 238.332 kb on + strand at 238.332 kb on + strand at 238.333 kb on - strand at 238.333 kb on - strand at 238.346 kb on + strand at 238.618 kb on + strand at 238.619 kb on - strand at 238.619 kb on - strand at 238.828 kb on + strand, within Pf1N1B4_5492 at 238.828 kb on + strand, within Pf1N1B4_5492 at 238.828 kb on + strand, within Pf1N1B4_5492 at 238.829 kb on - strand at 238.832 kb on + strand, within Pf1N1B4_5492 at 238.832 kb on + strand, within Pf1N1B4_5492 at 238.832 kb on + strand, within Pf1N1B4_5492 at 238.832 kb on + strand at 238.833 kb on - strand, within Pf1N1B4_5492 at 238.833 kb on - strand, within Pf1N1B4_5492 at 238.833 kb on - strand at 238.833 kb on - strand, within Pf1N1B4_5492 at 238.833 kb on - strand, within Pf1N1B4_5492 at 238.833 kb on - strand, within Pf1N1B4_5492 at 238.932 kb on + strand at 238.932 kb on + strand at 238.932 kb on + strand at 238.950 kb on + strand at 238.950 kb on + strand at 238.950 kb on + strand at 238.950 kb on + strand at 238.951 kb on - strand at 238.951 kb on - strand at 238.951 kb on - strand at 239.040 kb on + strand, within Pf1N1B4_5493 at 239.040 kb on + strand, within Pf1N1B4_5493 at 239.040 kb on + strand, within Pf1N1B4_5493 at 239.041 kb on - strand, within Pf1N1B4_5493 at 239.072 kb on + strand, within Pf1N1B4_5493 at 239.073 kb on - strand, within Pf1N1B4_5493 at 239.082 kb on + strand, within Pf1N1B4_5493 at 239.168 kb on - strand, within Pf1N1B4_5493 at 239.223 kb on - strand, within Pf1N1B4_5493 at 239.223 kb on - strand, within Pf1N1B4_5493 at 239.273 kb on + strand, within Pf1N1B4_5493 at 239.273 kb on + strand, within Pf1N1B4_5493 at 239.274 kb on - strand, within Pf1N1B4_5493 at 239.274 kb on - strand, within Pf1N1B4_5493 at 239.274 kb on - strand, within Pf1N1B4_5493 at 239.274 kb on - strand, within Pf1N1B4_5493 at 239.274 kb on - strand, within Pf1N1B4_5493 at 239.274 kb on - strand, within Pf1N1B4_5493 at 239.352 kb on - strand, within Pf1N1B4_5493 at 239.435 kb on + strand, within Pf1N1B4_5493 at 239.436 kb on - strand, within Pf1N1B4_5493 at 239.436 kb on - strand, within Pf1N1B4_5493 at 239.436 kb on - strand, within Pf1N1B4_5493 at 239.436 kb on - strand, within Pf1N1B4_5493 at 239.533 kb on + strand at 239.739 kb on + strand at 239.740 kb on - strand at 239.761 kb on + strand at 239.761 kb on + strand at 239.761 kb on + strand at 239.761 kb on + strand at 239.762 kb on - strand at 239.762 kb on - strand at 239.762 kb on - strand at 239.762 kb on - strand at 239.822 kb on - strand at 239.866 kb on + strand at 239.867 kb on - strand at 239.867 kb on - strand at 239.867 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction benzoic 0.58 mg/ml remove 237,647 - -1.3 237,663 + -2.1 237,663 + -0.9 237,663 + +0.5 237,663 + +0.6 237,664 - +0.3 237,664 - +1.1 237,664 - -0.5 237,664 - +0.6 237,710 + +0.5 237,710 + +0.3 237,710 + -0.9 237,711 - -1.1 237,711 - -0.0 237,711 - -0.7 237,711 - +0.1 237,722 + -1.5 237,722 + +0.6 237,723 - +0.5 237,723 - +1.1 237,742 + -1.3 237,742 + -1.3 237,742 + -0.7 237,743 - +0.1 237,743 - +0.1 237,762 - -0.3 237,842 + +1.1 237,842 + Pf1N1B4_5490 0.16 -1.3 237,842 + Pf1N1B4_5490 0.16 -0.9 237,843 - Pf1N1B4_5490 0.16 +0.1 237,843 - Pf1N1B4_5490 0.16 -0.9 237,843 - Pf1N1B4_5490 0.16 -0.8 237,848 + Pf1N1B4_5490 0.18 -0.3 237,848 + Pf1N1B4_5490 0.18 -0.4 237,848 + Pf1N1B4_5490 0.18 -0.3 237,849 - Pf1N1B4_5490 0.19 -0.5 237,849 - Pf1N1B4_5490 0.19 -0.9 237,854 + +2.1 237,855 - Pf1N1B4_5490 0.21 -1.3 237,896 + Pf1N1B4_5490 0.39 +0.1 237,896 + Pf1N1B4_5490 0.39 -0.2 237,908 + Pf1N1B4_5490 0.44 +2.1 237,909 - Pf1N1B4_5490 0.44 -0.6 237,909 - Pf1N1B4_5490 0.44 -0.1 237,942 + Pf1N1B4_5490 0.59 -2.1 237,943 - Pf1N1B4_5490 0.59 +1.3 238,020 + -0.8 238,020 + +0.5 238,020 + +0.6 238,020 + +1.9 238,020 + +0.2 238,021 - +0.4 238,036 + -0.8 238,036 + -1.5 238,036 + -0.9 238,036 + -0.4 238,036 + +1.1 238,074 + +0.3 238,074 + -0.9 238,074 + -0.9 238,075 - +0.3 238,075 - -1.3 238,075 - +0.5 238,105 + +1.6 238,171 + -0.9 238,234 + -1.6 238,281 + -2.4 238,281 + -0.1 238,281 + +1.1 238,281 + +1.1 238,282 - -2.3 238,282 - -0.2 238,282 - -1.2 238,332 + +0.2 238,332 + +1.1 238,333 - -0.1 238,333 - -0.9 238,346 + -0.8 238,618 + -2.1 238,619 - -1.3 238,619 - -0.5 238,828 + Pf1N1B4_5492 0.79 +0.1 238,828 + Pf1N1B4_5492 0.79 -1.6 238,828 + Pf1N1B4_5492 0.79 -0.8 238,829 - +1.1 238,832 + Pf1N1B4_5492 0.81 -0.8 238,832 + Pf1N1B4_5492 0.81 -0.5 238,832 + Pf1N1B4_5492 0.81 +0.1 238,832 + -0.5 238,833 - Pf1N1B4_5492 0.82 -0.4 238,833 - Pf1N1B4_5492 0.82 -0.9 238,833 - -1.9 238,833 - Pf1N1B4_5492 0.82 -0.4 238,833 - Pf1N1B4_5492 0.82 -1.3 238,833 - Pf1N1B4_5492 0.82 -0.4 238,932 + +2.1 238,932 + -1.9 238,932 + -0.9 238,950 + +0.5 238,950 + +1.1 238,950 + -0.8 238,950 + +0.7 238,951 - -0.5 238,951 - +0.7 238,951 - -0.7 239,040 + Pf1N1B4_5493 0.13 -1.5 239,040 + Pf1N1B4_5493 0.13 -0.0 239,040 + Pf1N1B4_5493 0.13 -0.5 239,041 - Pf1N1B4_5493 0.13 -0.4 239,072 + Pf1N1B4_5493 0.18 +2.6 239,073 - Pf1N1B4_5493 0.18 -1.5 239,082 + Pf1N1B4_5493 0.20 +1.8 239,168 - Pf1N1B4_5493 0.35 -0.6 239,223 - Pf1N1B4_5493 0.44 +1.1 239,223 - Pf1N1B4_5493 0.44 +0.6 239,273 + Pf1N1B4_5493 0.53 -0.8 239,273 + Pf1N1B4_5493 0.53 -0.7 239,274 - Pf1N1B4_5493 0.53 -1.5 239,274 - Pf1N1B4_5493 0.53 -0.8 239,274 - Pf1N1B4_5493 0.53 +0.6 239,274 - Pf1N1B4_5493 0.53 +0.2 239,274 - Pf1N1B4_5493 0.53 +1.7 239,274 - Pf1N1B4_5493 0.53 -0.3 239,352 - Pf1N1B4_5493 0.67 +1.5 239,435 + Pf1N1B4_5493 0.81 -0.8 239,436 - Pf1N1B4_5493 0.81 +1.1 239,436 - Pf1N1B4_5493 0.81 -1.3 239,436 - Pf1N1B4_5493 0.81 +0.5 239,436 - Pf1N1B4_5493 0.81 -0.8 239,533 + +0.1 239,739 + -1.3 239,740 - -1.9 239,761 + -0.4 239,761 + -1.4 239,761 + +1.3 239,761 + -0.8 239,762 - +1.4 239,762 - -0.2 239,762 - +1.1 239,762 - +0.4 239,822 - +0.2 239,866 + -0.2 239,867 - +1.1 239,867 - +0.2 239,867 - +1.1
Or see this region's nucleotide sequence