Experiment: benzoic 0.58 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_5111 and Pf1N1B4_5112 are separated by 270 nucleotides Pf1N1B4_5112 and Pf1N1B4_5113 are separated by 96 nucleotides Pf1N1B4_5113 and Pf1N1B4_5114 overlap by 4 nucleotides
Pf1N1B4_5111 - Maltoporin (maltose/maltodextrin high-affinity receptor, phage lambda receptor protein), at 5,669,882 to 5,671,447
_5111
Pf1N1B4_5112 - sucrose ABC transporter, substrate-binding component (from data) , at 5,671,718 to 5,672,890
_5112
Pf1N1B4_5113 - sucrose ABC transporter, permease component 1 (from data) , at 5,672,987 to 5,673,874
_5113
Pf1N1B4_5114 - sucrose ABC transporter, permease component 2 (from data) , at 5,673,871 to 5,674,713
_5114
Position (kb)
5671
5672
5673 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 5670.957 kb on + strand, within Pf1N1B4_5111 at 5670.957 kb on + strand, within Pf1N1B4_5111 at 5670.957 kb on + strand at 5670.958 kb on - strand, within Pf1N1B4_5111 at 5670.958 kb on - strand, within Pf1N1B4_5111 at 5670.958 kb on - strand, within Pf1N1B4_5111 at 5670.977 kb on + strand, within Pf1N1B4_5111 at 5670.977 kb on + strand, within Pf1N1B4_5111 at 5670.978 kb on - strand, within Pf1N1B4_5111 at 5670.987 kb on + strand, within Pf1N1B4_5111 at 5670.987 kb on + strand, within Pf1N1B4_5111 at 5670.987 kb on + strand, within Pf1N1B4_5111 at 5670.987 kb on + strand, within Pf1N1B4_5111 at 5670.988 kb on - strand, within Pf1N1B4_5111 at 5671.413 kb on - strand at 5671.731 kb on + strand at 5671.832 kb on + strand at 5671.833 kb on - strand at 5671.961 kb on + strand at 5671.993 kb on - strand, within Pf1N1B4_5112 at 5672.043 kb on - strand, within Pf1N1B4_5112 at 5672.069 kb on + strand, within Pf1N1B4_5112 at 5672.070 kb on - strand, within Pf1N1B4_5112 at 5672.168 kb on + strand at 5672.169 kb on - strand, within Pf1N1B4_5112 at 5672.411 kb on - strand, within Pf1N1B4_5112 at 5672.639 kb on + strand at 5672.640 kb on - strand, within Pf1N1B4_5112 at 5672.973 kb on + strand at 5673.134 kb on + strand, within Pf1N1B4_5113 at 5673.134 kb on + strand, within Pf1N1B4_5113 at 5673.213 kb on - strand at 5673.246 kb on + strand, within Pf1N1B4_5113 at 5673.692 kb on + strand, within Pf1N1B4_5113 at 5673.692 kb on + strand, within Pf1N1B4_5113 at 5673.693 kb on - strand, within Pf1N1B4_5113 at 5673.737 kb on + strand, within Pf1N1B4_5113 at 5673.737 kb on + strand, within Pf1N1B4_5113
Per-strain Table
Position Strand Gene LocusTag Fraction benzoic 0.58 mg/ml remove 5,670,957 + Pf1N1B4_5111 0.69 -1.7 5,670,957 + Pf1N1B4_5111 0.69 -0.6 5,670,957 + +0.4 5,670,958 - Pf1N1B4_5111 0.69 +0.4 5,670,958 - Pf1N1B4_5111 0.69 -1.4 5,670,958 - Pf1N1B4_5111 0.69 -0.6 5,670,977 + Pf1N1B4_5111 0.70 -0.6 5,670,977 + Pf1N1B4_5111 0.70 -1.5 5,670,978 - Pf1N1B4_5111 0.70 -0.6 5,670,987 + Pf1N1B4_5111 0.71 -0.2 5,670,987 + Pf1N1B4_5111 0.71 +0.8 5,670,987 + Pf1N1B4_5111 0.71 -1.1 5,670,987 + Pf1N1B4_5111 0.71 -0.4 5,670,988 - Pf1N1B4_5111 0.71 -1.3 5,671,413 - +0.2 5,671,731 + -1.1 5,671,832 + +1.0 5,671,833 - -0.3 5,671,961 + -0.1 5,671,993 - Pf1N1B4_5112 0.23 -2.1 5,672,043 - Pf1N1B4_5112 0.28 -0.1 5,672,069 + Pf1N1B4_5112 0.30 -1.1 5,672,070 - Pf1N1B4_5112 0.30 -0.1 5,672,168 + +2.0 5,672,169 - Pf1N1B4_5112 0.38 -0.3 5,672,411 - Pf1N1B4_5112 0.59 -0.8 5,672,639 + +2.4 5,672,640 - Pf1N1B4_5112 0.79 -0.8 5,672,973 + -1.5 5,673,134 + Pf1N1B4_5113 0.17 -0.4 5,673,134 + Pf1N1B4_5113 0.17 +0.1 5,673,213 - +0.4 5,673,246 + Pf1N1B4_5113 0.29 -2.4 5,673,692 + Pf1N1B4_5113 0.79 +0.0 5,673,692 + Pf1N1B4_5113 0.79 -0.7 5,673,693 - Pf1N1B4_5113 0.80 -1.1 5,673,737 + Pf1N1B4_5113 0.84 -0.2 5,673,737 + Pf1N1B4_5113 0.84 -0.6
Or see this region's nucleotide sequence