Experiment: benzoic 0.58 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_4963 and Pf1N1B4_4964 are separated by 22 nucleotides Pf1N1B4_4964 and Pf1N1B4_4965 are separated by 24 nucleotides
Pf1N1B4_4963 - Tricarboxylate transport protein TctC, at 5,504,289 to 5,505,254
_4963
Pf1N1B4_4964 - Tricarboxylate transport protein TctB, at 5,505,277 to 5,505,747
_4964
Pf1N1B4_4965 - Tricarboxylate transport membrane protein TctA, at 5,505,772 to 5,507,280
_4965
Position (kb)
5505
5506 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 5504.416 kb on - strand, within Pf1N1B4_4963 at 5504.659 kb on - strand, within Pf1N1B4_4963 at 5504.659 kb on - strand, within Pf1N1B4_4963 at 5504.835 kb on + strand, within Pf1N1B4_4963 at 5504.836 kb on - strand, within Pf1N1B4_4963 at 5504.929 kb on - strand, within Pf1N1B4_4963 at 5504.929 kb on - strand, within Pf1N1B4_4963 at 5505.019 kb on - strand, within Pf1N1B4_4963 at 5505.083 kb on + strand, within Pf1N1B4_4963 at 5505.084 kb on - strand, within Pf1N1B4_4963 at 5505.127 kb on + strand, within Pf1N1B4_4963 at 5505.127 kb on + strand, within Pf1N1B4_4963 at 5505.128 kb on - strand, within Pf1N1B4_4963 at 5505.191 kb on + strand at 5505.302 kb on + strand at 5505.302 kb on + strand at 5505.303 kb on - strand at 5505.385 kb on + strand, within Pf1N1B4_4964 at 5505.385 kb on + strand, within Pf1N1B4_4964 at 5505.391 kb on + strand, within Pf1N1B4_4964 at 5505.567 kb on + strand, within Pf1N1B4_4964 at 5505.571 kb on + strand, within Pf1N1B4_4964 at 5505.602 kb on + strand, within Pf1N1B4_4964 at 5505.603 kb on - strand, within Pf1N1B4_4964 at 5505.912 kb on - strand at 5505.976 kb on + strand, within Pf1N1B4_4965 at 5505.976 kb on + strand, within Pf1N1B4_4965 at 5506.210 kb on + strand, within Pf1N1B4_4965 at 5506.211 kb on - strand, within Pf1N1B4_4965 at 5506.211 kb on - strand, within Pf1N1B4_4965 at 5506.432 kb on + strand, within Pf1N1B4_4965 at 5506.445 kb on - strand, within Pf1N1B4_4965 at 5506.606 kb on + strand at 5506.607 kb on - strand, within Pf1N1B4_4965
Per-strain Table
Position Strand Gene LocusTag Fraction benzoic 0.58 mg/ml remove 5,504,416 - Pf1N1B4_4963 0.13 +2.0 5,504,659 - Pf1N1B4_4963 0.38 -0.3 5,504,659 - Pf1N1B4_4963 0.38 +0.3 5,504,835 + Pf1N1B4_4963 0.57 +1.0 5,504,836 - Pf1N1B4_4963 0.57 +0.6 5,504,929 - Pf1N1B4_4963 0.66 -1.6 5,504,929 - Pf1N1B4_4963 0.66 +0.6 5,505,019 - Pf1N1B4_4963 0.76 +0.2 5,505,083 + Pf1N1B4_4963 0.82 +0.2 5,505,084 - Pf1N1B4_4963 0.82 -0.6 5,505,127 + Pf1N1B4_4963 0.87 -1.4 5,505,127 + Pf1N1B4_4963 0.87 -1.2 5,505,128 - Pf1N1B4_4963 0.87 +0.1 5,505,191 + +0.4 5,505,302 + -0.6 5,505,302 + -0.2 5,505,303 - +0.0 5,505,385 + Pf1N1B4_4964 0.23 -1.7 5,505,385 + Pf1N1B4_4964 0.23 -1.6 5,505,391 + Pf1N1B4_4964 0.24 -0.2 5,505,567 + Pf1N1B4_4964 0.62 -0.4 5,505,571 + Pf1N1B4_4964 0.62 -2.7 5,505,602 + Pf1N1B4_4964 0.69 -0.9 5,505,603 - Pf1N1B4_4964 0.69 -0.5 5,505,912 - -0.6 5,505,976 + Pf1N1B4_4965 0.14 -2.2 5,505,976 + Pf1N1B4_4965 0.14 -2.9 5,506,210 + Pf1N1B4_4965 0.29 -0.2 5,506,211 - Pf1N1B4_4965 0.29 +0.5 5,506,211 - Pf1N1B4_4965 0.29 +1.2 5,506,432 + Pf1N1B4_4965 0.44 -1.6 5,506,445 - Pf1N1B4_4965 0.45 -2.4 5,506,606 + -1.2 5,506,607 - Pf1N1B4_4965 0.55 +1.2
Or see this region's nucleotide sequence