Experiment: benzoic 0.58 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_4831 and Pf1N1B4_4832 are separated by 562 nucleotides Pf1N1B4_4832 and Pf1N1B4_4833 are separated by 7 nucleotides Pf1N1B4_4833 and Pf1N1B4_4834 are separated by 33 nucleotides
Pf1N1B4_4831 - Outer membrane protein assembly factor YaeT precursor, at 5,335,426 to 5,336,895
_4831
Pf1N1B4_4832 - hypothetical protein, at 5,337,458 to 5,337,664
_4832
Pf1N1B4_4833 - DNA-binding response regulator, LuxR family, at 5,337,672 to 5,338,304
_4833
Pf1N1B4_4834 - Sensor histidine kinase, at 5,338,338 to 5,339,699
_4834
Position (kb) 5337
5338
5339 Strain fitness (log2 ratio) -2
-1
0
1 at 5336.963 kb on + strand at 5337.036 kb on + strand at 5337.172 kb on + strand at 5337.382 kb on + strand at 5337.497 kb on + strand, within Pf1N1B4_4832 at 5337.497 kb on + strand, within Pf1N1B4_4832 at 5337.498 kb on - strand, within Pf1N1B4_4832 at 5337.498 kb on - strand, within Pf1N1B4_4832 at 5337.501 kb on + strand, within Pf1N1B4_4832 at 5337.501 kb on + strand, within Pf1N1B4_4832 at 5337.501 kb on + strand, within Pf1N1B4_4832 at 5337.501 kb on + strand, within Pf1N1B4_4832 at 5337.502 kb on - strand, within Pf1N1B4_4832 at 5337.502 kb on - strand, within Pf1N1B4_4832 at 5337.502 kb on - strand, within Pf1N1B4_4832 at 5337.505 kb on + strand, within Pf1N1B4_4832 at 5337.508 kb on + strand, within Pf1N1B4_4832 at 5337.508 kb on + strand, within Pf1N1B4_4832 at 5337.532 kb on + strand at 5337.625 kb on + strand, within Pf1N1B4_4832 at 5337.768 kb on + strand at 5337.916 kb on + strand, within Pf1N1B4_4833 at 5337.916 kb on + strand, within Pf1N1B4_4833 at 5337.988 kb on + strand, within Pf1N1B4_4833 at 5338.025 kb on - strand, within Pf1N1B4_4833 at 5338.030 kb on + strand, within Pf1N1B4_4833 at 5338.030 kb on + strand, within Pf1N1B4_4833 at 5338.831 kb on - strand, within Pf1N1B4_4834 at 5339.164 kb on + strand, within Pf1N1B4_4834 at 5339.164 kb on + strand, within Pf1N1B4_4834 at 5339.164 kb on + strand, within Pf1N1B4_4834 at 5339.212 kb on + strand, within Pf1N1B4_4834 at 5339.213 kb on - strand, within Pf1N1B4_4834 at 5339.213 kb on - strand, within Pf1N1B4_4834 at 5339.213 kb on - strand, within Pf1N1B4_4834 at 5339.213 kb on - strand at 5339.213 kb on - strand, within Pf1N1B4_4834
Per-strain Table
Position Strand Gene LocusTag Fraction benzoic 0.58 mg/ml remove 5,336,963 + -0.8 5,337,036 + -0.5 5,337,172 + -0.7 5,337,382 + -0.5 5,337,497 + Pf1N1B4_4832 0.19 -0.2 5,337,497 + Pf1N1B4_4832 0.19 -0.9 5,337,498 - Pf1N1B4_4832 0.19 +1.1 5,337,498 - Pf1N1B4_4832 0.19 +1.0 5,337,501 + Pf1N1B4_4832 0.21 -0.5 5,337,501 + Pf1N1B4_4832 0.21 -0.2 5,337,501 + Pf1N1B4_4832 0.21 +1.5 5,337,501 + Pf1N1B4_4832 0.21 -2.1 5,337,502 - Pf1N1B4_4832 0.21 -2.4 5,337,502 - Pf1N1B4_4832 0.21 -0.2 5,337,502 - Pf1N1B4_4832 0.21 -0.0 5,337,505 + Pf1N1B4_4832 0.23 +0.7 5,337,508 + Pf1N1B4_4832 0.24 -2.0 5,337,508 + Pf1N1B4_4832 0.24 -0.5 5,337,532 + +1.7 5,337,625 + Pf1N1B4_4832 0.81 -0.5 5,337,768 + +1.2 5,337,916 + Pf1N1B4_4833 0.39 -0.1 5,337,916 + Pf1N1B4_4833 0.39 -0.5 5,337,988 + Pf1N1B4_4833 0.50 -1.5 5,338,025 - Pf1N1B4_4833 0.56 -0.2 5,338,030 + Pf1N1B4_4833 0.57 -2.1 5,338,030 + Pf1N1B4_4833 0.57 -1.1 5,338,831 - Pf1N1B4_4834 0.36 -1.7 5,339,164 + Pf1N1B4_4834 0.61 -1.1 5,339,164 + Pf1N1B4_4834 0.61 +0.7 5,339,164 + Pf1N1B4_4834 0.61 +0.6 5,339,212 + Pf1N1B4_4834 0.64 +0.5 5,339,213 - Pf1N1B4_4834 0.64 +1.0 5,339,213 - Pf1N1B4_4834 0.64 +0.8 5,339,213 - Pf1N1B4_4834 0.64 +1.5 5,339,213 - -2.4 5,339,213 - Pf1N1B4_4834 0.64 +0.5
Or see this region's nucleotide sequence