Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_4705

Experiment: benzoic 0.58 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_4704 and Pf1N1B4_4705 are separated by 267 nucleotidesPf1N1B4_4705 and Pf1N1B4_4706 are separated by 2 nucleotidesPf1N1B4_4706 and Pf1N1B4_4707 are separated by 122 nucleotidesPf1N1B4_4707 and Pf1N1B4_4708 are separated by 165 nucleotides Pf1N1B4_4704 - hypothetical protein, at 5,198,896 to 5,203,722 _4704 Pf1N1B4_4705 - Delta 1-piperideine-2-carboxylate reductase (EC 1.5.1.21) / Delta 1-pyrroline-2-carboxylate reductase (EC 1.5.1.1), at 5,203,990 to 5,204,832 _4705 Pf1N1B4_4706 - Delta 1-piperideine-2-carboxylate reductase (EC 1.5.1.21) / Delta 1-pyrroline-2-carboxylate reductase (EC 1.5.1.1), at 5,204,835 to 5,205,029 _4706 Pf1N1B4_4707 - Probable transmembrane protein, at 5,205,152 to 5,205,469 _4707 Pf1N1B4_4708 - FIG00958097: hypothetical protein, at 5,205,635 to 5,205,886 _4708 Position (kb) 5203 5204 5205Strain fitness (log2 ratio) -2 -1 0 1 2at 5203.454 kb on + strandat 5203.455 kb on - strandat 5203.779 kb on - strandat 5203.806 kb on - strandat 5203.809 kb on + strandat 5203.813 kb on + strandat 5203.971 kb on - strandat 5204.012 kb on + strandat 5204.013 kb on - strandat 5204.016 kb on + strandat 5204.016 kb on + strandat 5204.364 kb on + strand, within Pf1N1B4_4705at 5204.364 kb on + strand, within Pf1N1B4_4705at 5204.583 kb on - strand, within Pf1N1B4_4705at 5204.583 kb on - strand, within Pf1N1B4_4705at 5204.583 kb on - strand, within Pf1N1B4_4705at 5204.707 kb on - strand, within Pf1N1B4_4705at 5204.738 kb on + strand, within Pf1N1B4_4705at 5205.137 kb on + strandat 5205.137 kb on + strandat 5205.234 kb on + strandat 5205.475 kb on + strandat 5205.475 kb on + strandat 5205.476 kb on - strandat 5205.592 kb on + strandat 5205.592 kb on + strandat 5205.592 kb on + strandat 5205.592 kb on + strandat 5205.592 kb on + strandat 5205.593 kb on - strandat 5205.593 kb on - strandat 5205.593 kb on - strandat 5205.599 kb on + strandat 5205.600 kb on - strandat 5205.600 kb on - strandat 5205.611 kb on + strandat 5205.617 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction benzoic 0.58 mg/ml
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5,203,454 + -1.0
5,203,455 - -0.8
5,203,779 - +0.5
5,203,806 - -0.1
5,203,809 + -0.9
5,203,813 + +1.5
5,203,971 - -0.1
5,204,012 + +0.5
5,204,013 - +0.5
5,204,016 + -0.1
5,204,016 + -2.0
5,204,364 + Pf1N1B4_4705 0.44 -1.1
5,204,364 + Pf1N1B4_4705 0.44 -0.1
5,204,583 - Pf1N1B4_4705 0.70 -0.9
5,204,583 - Pf1N1B4_4705 0.70 -1.1
5,204,583 - Pf1N1B4_4705 0.70 +0.2
5,204,707 - Pf1N1B4_4705 0.85 -0.8
5,204,738 + Pf1N1B4_4705 0.89 -0.9
5,205,137 + +0.5
5,205,137 + +0.5
5,205,234 + +0.5
5,205,475 + -0.3
5,205,475 + -0.1
5,205,476 - -1.0
5,205,592 + -0.7
5,205,592 + -0.3
5,205,592 + -1.1
5,205,592 + -0.4
5,205,592 + -0.5
5,205,593 - +0.7
5,205,593 - +2.5
5,205,593 - +0.2
5,205,599 + +0.2
5,205,600 - +0.1
5,205,600 - +0.3
5,205,611 + +1.5
5,205,617 - -0.5

Or see this region's nucleotide sequence