Experiment: benzoic 0.58 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_4694 and Pf1N1B4_4695 overlap by 12 nucleotides Pf1N1B4_4695 and Pf1N1B4_4696 overlap by 4 nucleotides
Pf1N1B4_4694 - Transcriptional regulator, LysR family, at 5,185,795 to 5,186,721
_4694
Pf1N1B4_4695 - hypothetical protein, at 5,186,710 to 5,187,672
_4695
Pf1N1B4_4696 - Phenylacetate-coenzyme A ligase (EC 6.2.1.30), at 5,187,669 to 5,188,961
_4696
Position (kb)
5186
5187
5188 Strain fitness (log2 ratio)
-2
-1
0
1 at 5185.987 kb on + strand at 5186.368 kb on + strand, within Pf1N1B4_4694 at 5186.500 kb on + strand, within Pf1N1B4_4694 at 5186.521 kb on + strand at 5186.612 kb on - strand at 5186.782 kb on + strand at 5186.782 kb on + strand at 5186.783 kb on - strand at 5186.783 kb on - strand at 5186.990 kb on - strand, within Pf1N1B4_4695 at 5186.990 kb on - strand, within Pf1N1B4_4695 at 5187.254 kb on + strand, within Pf1N1B4_4695 at 5187.312 kb on - strand, within Pf1N1B4_4695 at 5187.376 kb on + strand, within Pf1N1B4_4695 at 5187.376 kb on + strand, within Pf1N1B4_4695 at 5187.402 kb on + strand, within Pf1N1B4_4695 at 5187.700 kb on + strand at 5187.700 kb on + strand at 5187.701 kb on - strand at 5187.826 kb on + strand, within Pf1N1B4_4696 at 5187.987 kb on + strand, within Pf1N1B4_4696 at 5188.064 kb on + strand, within Pf1N1B4_4696 at 5188.162 kb on - strand, within Pf1N1B4_4696 at 5188.162 kb on - strand, within Pf1N1B4_4696 at 5188.162 kb on - strand, within Pf1N1B4_4696 at 5188.341 kb on + strand, within Pf1N1B4_4696 at 5188.342 kb on - strand, within Pf1N1B4_4696 at 5188.455 kb on + strand, within Pf1N1B4_4696 at 5188.455 kb on + strand, within Pf1N1B4_4696 at 5188.456 kb on - strand, within Pf1N1B4_4696
Per-strain Table
Position Strand Gene LocusTag Fraction benzoic 0.58 mg/ml remove 5,185,987 + -0.5 5,186,368 + Pf1N1B4_4694 0.62 +0.1 5,186,500 + Pf1N1B4_4694 0.76 -0.8 5,186,521 + +0.5 5,186,612 - +1.0 5,186,782 + -2.7 5,186,782 + -0.9 5,186,783 - -0.5 5,186,783 - -2.4 5,186,990 - Pf1N1B4_4695 0.29 +1.2 5,186,990 - Pf1N1B4_4695 0.29 -1.9 5,187,254 + Pf1N1B4_4695 0.56 -2.7 5,187,312 - Pf1N1B4_4695 0.63 -0.9 5,187,376 + Pf1N1B4_4695 0.69 -1.5 5,187,376 + Pf1N1B4_4695 0.69 -1.0 5,187,402 + Pf1N1B4_4695 0.72 +0.6 5,187,700 + -0.5 5,187,700 + -0.3 5,187,701 - -0.9 5,187,826 + Pf1N1B4_4696 0.12 -0.2 5,187,987 + Pf1N1B4_4696 0.25 -0.2 5,188,064 + Pf1N1B4_4696 0.31 +1.5 5,188,162 - Pf1N1B4_4696 0.38 -0.9 5,188,162 - Pf1N1B4_4696 0.38 -0.5 5,188,162 - Pf1N1B4_4696 0.38 +0.7 5,188,341 + Pf1N1B4_4696 0.52 +0.6 5,188,342 - Pf1N1B4_4696 0.52 -1.1 5,188,455 + Pf1N1B4_4696 0.61 +1.3 5,188,455 + Pf1N1B4_4696 0.61 -0.5 5,188,456 - Pf1N1B4_4696 0.61 -1.1
Or see this region's nucleotide sequence