Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_4555

Experiment: benzoic 0.58 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_4553 and Pf1N1B4_4554 are separated by 9 nucleotidesPf1N1B4_4554 and Pf1N1B4_4555 are separated by 127 nucleotidesPf1N1B4_4555 and Pf1N1B4_4556 are separated by 53 nucleotidesPf1N1B4_4556 and Pf1N1B4_4557 are separated by 2 nucleotides Pf1N1B4_4553 - FIG00959354: hypothetical protein, at 5,021,987 to 5,024,857 _4553 Pf1N1B4_4554 - 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100), at 5,024,867 to 5,025,355 _4554 Pf1N1B4_4555 - 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100), at 5,025,483 to 5,025,602 _4555 Pf1N1B4_4556 - D-beta-hydroxybutyrate dehydrogenase (EC 1.1.1.30), at 5,025,656 to 5,026,363 _4556 Pf1N1B4_4557 - FIG00955691: hypothetical protein, at 5,026,366 to 5,027,649 _4557 Position (kb) 5025 5026Strain fitness (log2 ratio) -2 -1 0 1 2 3at 5024.488 kb on - strandat 5024.488 kb on - strand, within Pf1N1B4_4553at 5024.615 kb on + strandat 5024.699 kb on + strandat 5024.855 kb on + strandat 5024.966 kb on + strand, within Pf1N1B4_4554at 5024.967 kb on - strand, within Pf1N1B4_4554at 5025.269 kb on - strand, within Pf1N1B4_4554at 5025.324 kb on - strandat 5025.531 kb on + strand, within Pf1N1B4_4555at 5025.532 kb on - strand, within Pf1N1B4_4555at 5025.532 kb on - strand, within Pf1N1B4_4555at 5025.532 kb on - strand, within Pf1N1B4_4555at 5025.532 kb on - strand, within Pf1N1B4_4555at 5025.644 kb on - strandat 5025.770 kb on + strandat 5025.772 kb on + strandat 5025.839 kb on + strandat 5025.944 kb on + strand, within Pf1N1B4_4556at 5025.945 kb on - strand, within Pf1N1B4_4556at 5025.945 kb on - strand, within Pf1N1B4_4556at 5025.997 kb on + strand, within Pf1N1B4_4556at 5025.997 kb on + strand, within Pf1N1B4_4556at 5025.998 kb on - strand, within Pf1N1B4_4556at 5025.998 kb on - strand, within Pf1N1B4_4556at 5026.361 kb on + strandat 5026.361 kb on + strandat 5026.528 kb on + strand, within Pf1N1B4_4557at 5026.570 kb on + strand, within Pf1N1B4_4557

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Per-strain Table

Position Strand Gene LocusTag Fraction benzoic 0.58 mg/ml
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5,024,488 - +3.1
5,024,488 - Pf1N1B4_4553 0.87 +0.9
5,024,615 + -1.0
5,024,699 + -0.7
5,024,855 + -0.0
5,024,966 + Pf1N1B4_4554 0.20 -0.5
5,024,967 - Pf1N1B4_4554 0.20 -0.0
5,025,269 - Pf1N1B4_4554 0.82 -0.2
5,025,324 - -0.8
5,025,531 + Pf1N1B4_4555 0.40 -1.4
5,025,532 - Pf1N1B4_4555 0.41 -0.5
5,025,532 - Pf1N1B4_4555 0.41 -1.3
5,025,532 - Pf1N1B4_4555 0.41 +0.8
5,025,532 - Pf1N1B4_4555 0.41 -1.3
5,025,644 - +0.2
5,025,770 + -0.5
5,025,772 + -0.5
5,025,839 + +0.5
5,025,944 + Pf1N1B4_4556 0.41 -0.4
5,025,945 - Pf1N1B4_4556 0.41 -0.2
5,025,945 - Pf1N1B4_4556 0.41 +0.1
5,025,997 + Pf1N1B4_4556 0.48 -1.1
5,025,997 + Pf1N1B4_4556 0.48 +0.7
5,025,998 - Pf1N1B4_4556 0.48 -0.7
5,025,998 - Pf1N1B4_4556 0.48 -1.1
5,026,361 + -1.8
5,026,361 + -1.5
5,026,528 + Pf1N1B4_4557 0.13 +0.9
5,026,570 + Pf1N1B4_4557 0.16 -0.1

Or see this region's nucleotide sequence