Experiment: benzoic 0.58 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_4553 and Pf1N1B4_4554 are separated by 9 nucleotides Pf1N1B4_4554 and Pf1N1B4_4555 are separated by 127 nucleotides Pf1N1B4_4555 and Pf1N1B4_4556 are separated by 53 nucleotides Pf1N1B4_4556 and Pf1N1B4_4557 are separated by 2 nucleotides
Pf1N1B4_4553 - FIG00959354: hypothetical protein, at 5,021,987 to 5,024,857
_4553
Pf1N1B4_4554 - 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100), at 5,024,867 to 5,025,355
_4554
Pf1N1B4_4555 - 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100), at 5,025,483 to 5,025,602
_4555
Pf1N1B4_4556 - D-beta-hydroxybutyrate dehydrogenase (EC 1.1.1.30), at 5,025,656 to 5,026,363
_4556
Pf1N1B4_4557 - FIG00955691: hypothetical protein, at 5,026,366 to 5,027,649
_4557
Position (kb)
5025
5026 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 5024.488 kb on - strand at 5024.488 kb on - strand, within Pf1N1B4_4553 at 5024.615 kb on + strand at 5024.699 kb on + strand at 5024.855 kb on + strand at 5024.966 kb on + strand, within Pf1N1B4_4554 at 5024.967 kb on - strand, within Pf1N1B4_4554 at 5025.269 kb on - strand, within Pf1N1B4_4554 at 5025.324 kb on - strand at 5025.531 kb on + strand, within Pf1N1B4_4555 at 5025.532 kb on - strand, within Pf1N1B4_4555 at 5025.532 kb on - strand, within Pf1N1B4_4555 at 5025.532 kb on - strand, within Pf1N1B4_4555 at 5025.532 kb on - strand, within Pf1N1B4_4555 at 5025.644 kb on - strand at 5025.770 kb on + strand at 5025.772 kb on + strand at 5025.839 kb on + strand at 5025.944 kb on + strand, within Pf1N1B4_4556 at 5025.945 kb on - strand, within Pf1N1B4_4556 at 5025.945 kb on - strand, within Pf1N1B4_4556 at 5025.997 kb on + strand, within Pf1N1B4_4556 at 5025.997 kb on + strand, within Pf1N1B4_4556 at 5025.998 kb on - strand, within Pf1N1B4_4556 at 5025.998 kb on - strand, within Pf1N1B4_4556 at 5026.361 kb on + strand at 5026.361 kb on + strand at 5026.528 kb on + strand, within Pf1N1B4_4557 at 5026.570 kb on + strand, within Pf1N1B4_4557
Per-strain Table
Position Strand Gene LocusTag Fraction benzoic 0.58 mg/ml remove 5,024,488 - +3.1 5,024,488 - Pf1N1B4_4553 0.87 +0.9 5,024,615 + -1.0 5,024,699 + -0.7 5,024,855 + -0.0 5,024,966 + Pf1N1B4_4554 0.20 -0.5 5,024,967 - Pf1N1B4_4554 0.20 -0.0 5,025,269 - Pf1N1B4_4554 0.82 -0.2 5,025,324 - -0.8 5,025,531 + Pf1N1B4_4555 0.40 -1.4 5,025,532 - Pf1N1B4_4555 0.41 -0.5 5,025,532 - Pf1N1B4_4555 0.41 -1.3 5,025,532 - Pf1N1B4_4555 0.41 +0.8 5,025,532 - Pf1N1B4_4555 0.41 -1.3 5,025,644 - +0.2 5,025,770 + -0.5 5,025,772 + -0.5 5,025,839 + +0.5 5,025,944 + Pf1N1B4_4556 0.41 -0.4 5,025,945 - Pf1N1B4_4556 0.41 -0.2 5,025,945 - Pf1N1B4_4556 0.41 +0.1 5,025,997 + Pf1N1B4_4556 0.48 -1.1 5,025,997 + Pf1N1B4_4556 0.48 +0.7 5,025,998 - Pf1N1B4_4556 0.48 -0.7 5,025,998 - Pf1N1B4_4556 0.48 -1.1 5,026,361 + -1.8 5,026,361 + -1.5 5,026,528 + Pf1N1B4_4557 0.13 +0.9 5,026,570 + Pf1N1B4_4557 0.16 -0.1
Or see this region's nucleotide sequence