Experiment: benzoic 0.58 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_4242 and Pf1N1B4_4243 are separated by 157 nucleotides Pf1N1B4_4243 and Pf1N1B4_4244 are separated by 3 nucleotides
Pf1N1B4_4242 - cell processes; transport of small molecules; amino acids, amines, peptides, at 4,700,650 to 4,702,215
_4242
Pf1N1B4_4243 - Alcohol dehydrogenase (EC 1.1.1.1), at 4,702,373 to 4,703,533
_4243
Pf1N1B4_4244 - Aldehyde dehydrogenase (EC 1.2.1.3), at 4,703,537 to 4,704,928
_4244
Position (kb) 4702
4703
4704 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4701.453 kb on + strand, within Pf1N1B4_4242 at 4701.454 kb on - strand at 4701.486 kb on - strand at 4701.486 kb on - strand, within Pf1N1B4_4242 at 4701.567 kb on - strand, within Pf1N1B4_4242 at 4701.809 kb on + strand, within Pf1N1B4_4242 at 4701.812 kb on + strand, within Pf1N1B4_4242 at 4702.204 kb on + strand at 4702.215 kb on + strand at 4702.298 kb on + strand at 4702.299 kb on - strand at 4702.374 kb on + strand at 4702.522 kb on + strand, within Pf1N1B4_4243 at 4702.602 kb on + strand, within Pf1N1B4_4243 at 4702.655 kb on + strand at 4702.655 kb on + strand, within Pf1N1B4_4243 at 4702.655 kb on + strand, within Pf1N1B4_4243 at 4702.655 kb on + strand, within Pf1N1B4_4243 at 4702.656 kb on - strand, within Pf1N1B4_4243 at 4702.656 kb on - strand, within Pf1N1B4_4243 at 4702.659 kb on + strand at 4702.660 kb on - strand at 4702.701 kb on + strand at 4702.832 kb on + strand, within Pf1N1B4_4243 at 4702.873 kb on + strand, within Pf1N1B4_4243 at 4702.873 kb on + strand, within Pf1N1B4_4243 at 4702.874 kb on - strand, within Pf1N1B4_4243 at 4703.678 kb on + strand, within Pf1N1B4_4244 at 4703.678 kb on + strand, within Pf1N1B4_4244 at 4703.741 kb on - strand, within Pf1N1B4_4244 at 4703.857 kb on + strand, within Pf1N1B4_4244 at 4703.857 kb on + strand, within Pf1N1B4_4244 at 4703.857 kb on + strand, within Pf1N1B4_4244 at 4703.857 kb on + strand at 4703.877 kb on - strand, within Pf1N1B4_4244 at 4703.888 kb on + strand, within Pf1N1B4_4244 at 4703.889 kb on - strand, within Pf1N1B4_4244 at 4704.005 kb on - strand, within Pf1N1B4_4244 at 4704.054 kb on + strand, within Pf1N1B4_4244 at 4704.055 kb on - strand, within Pf1N1B4_4244 at 4704.115 kb on - strand, within Pf1N1B4_4244 at 4704.118 kb on + strand, within Pf1N1B4_4244 at 4704.118 kb on + strand, within Pf1N1B4_4244 at 4704.118 kb on + strand, within Pf1N1B4_4244 at 4704.119 kb on - strand, within Pf1N1B4_4244 at 4704.119 kb on - strand, within Pf1N1B4_4244 at 4704.214 kb on - strand, within Pf1N1B4_4244 at 4704.503 kb on - strand, within Pf1N1B4_4244 at 4704.526 kb on - strand, within Pf1N1B4_4244 at 4704.526 kb on - strand, within Pf1N1B4_4244
Per-strain Table
Position Strand Gene LocusTag Fraction benzoic 0.58 mg/ml remove 4,701,453 + Pf1N1B4_4242 0.51 +0.4 4,701,454 - +0.6 4,701,486 - +0.6 4,701,486 - Pf1N1B4_4242 0.53 -0.4 4,701,567 - Pf1N1B4_4242 0.59 -1.2 4,701,809 + Pf1N1B4_4242 0.74 -1.4 4,701,812 + Pf1N1B4_4242 0.74 +0.1 4,702,204 + +1.0 4,702,215 + -0.0 4,702,298 + -1.7 4,702,299 - +0.8 4,702,374 + -2.4 4,702,522 + Pf1N1B4_4243 0.13 -0.3 4,702,602 + Pf1N1B4_4243 0.20 -1.2 4,702,655 + -0.0 4,702,655 + Pf1N1B4_4243 0.24 -1.4 4,702,655 + Pf1N1B4_4243 0.24 -1.4 4,702,655 + Pf1N1B4_4243 0.24 -3.0 4,702,656 - Pf1N1B4_4243 0.24 -0.2 4,702,656 - Pf1N1B4_4243 0.24 -1.4 4,702,659 + -0.4 4,702,660 - -1.7 4,702,701 + +1.9 4,702,832 + Pf1N1B4_4243 0.40 -0.2 4,702,873 + Pf1N1B4_4243 0.43 -0.2 4,702,873 + Pf1N1B4_4243 0.43 -0.9 4,702,874 - Pf1N1B4_4243 0.43 -1.2 4,703,678 + Pf1N1B4_4244 0.10 -1.4 4,703,678 + Pf1N1B4_4244 0.10 -0.6 4,703,741 - Pf1N1B4_4244 0.15 +0.2 4,703,857 + Pf1N1B4_4244 0.23 +0.6 4,703,857 + Pf1N1B4_4244 0.23 -2.2 4,703,857 + Pf1N1B4_4244 0.23 -0.6 4,703,857 + +2.2 4,703,877 - Pf1N1B4_4244 0.24 -1.0 4,703,888 + Pf1N1B4_4244 0.25 +1.6 4,703,889 - Pf1N1B4_4244 0.25 -1.6 4,704,005 - Pf1N1B4_4244 0.34 -1.4 4,704,054 + Pf1N1B4_4244 0.37 +0.6 4,704,055 - Pf1N1B4_4244 0.37 +0.7 4,704,115 - Pf1N1B4_4244 0.42 -0.4 4,704,118 + Pf1N1B4_4244 0.42 +0.2 4,704,118 + Pf1N1B4_4244 0.42 -0.1 4,704,118 + Pf1N1B4_4244 0.42 +0.3 4,704,119 - Pf1N1B4_4244 0.42 +1.2 4,704,119 - Pf1N1B4_4244 0.42 -1.0 4,704,214 - Pf1N1B4_4244 0.49 -1.3 4,704,503 - Pf1N1B4_4244 0.69 +1.2 4,704,526 - Pf1N1B4_4244 0.71 +0.5 4,704,526 - Pf1N1B4_4244 0.71 -0.3
Or see this region's nucleotide sequence