Experiment: benzoic 0.58 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_4098 and Pf1N1B4_4099 are separated by 82 nucleotides Pf1N1B4_4099 and Pf1N1B4_4100 overlap by 31 nucleotides Pf1N1B4_4100 and Pf1N1B4_4101 are separated by 317 nucleotides
Pf1N1B4_4098 - Putative nucleoside transporter yegT, at 4,547,271 to 4,548,473
_4098
Pf1N1B4_4099 - hypothetical protein, at 4,548,556 to 4,548,681
_4099
Pf1N1B4_4100 - probable transmembrane protein, at 4,548,651 to 4,549,466
_4100
Pf1N1B4_4101 - Transcriptional regulator, AraC family, at 4,549,784 to 4,550,575
_4101
Position (kb)
4548
4549
4550 Strain fitness (log2 ratio)
-2
-1
0
1 at 4547.839 kb on + strand, within Pf1N1B4_4098 at 4547.889 kb on + strand, within Pf1N1B4_4098 at 4547.913 kb on - strand at 4548.192 kb on + strand, within Pf1N1B4_4098 at 4548.222 kb on + strand, within Pf1N1B4_4098 at 4548.222 kb on + strand, within Pf1N1B4_4098 at 4548.223 kb on - strand, within Pf1N1B4_4098 at 4548.289 kb on - strand, within Pf1N1B4_4098 at 4548.342 kb on + strand, within Pf1N1B4_4098 at 4548.342 kb on + strand, within Pf1N1B4_4098 at 4548.342 kb on + strand, within Pf1N1B4_4098 at 4548.612 kb on - strand, within Pf1N1B4_4099 at 4548.612 kb on - strand, within Pf1N1B4_4099 at 4548.614 kb on + strand, within Pf1N1B4_4099 at 4548.614 kb on + strand at 4548.615 kb on - strand, within Pf1N1B4_4099 at 4548.712 kb on + strand at 4548.712 kb on + strand at 4548.712 kb on + strand at 4548.713 kb on - strand at 4548.713 kb on - strand at 4548.879 kb on - strand, within Pf1N1B4_4100 at 4548.907 kb on + strand, within Pf1N1B4_4100 at 4548.908 kb on - strand, within Pf1N1B4_4100 at 4548.908 kb on - strand, within Pf1N1B4_4100 at 4548.908 kb on - strand, within Pf1N1B4_4100 at 4549.161 kb on - strand, within Pf1N1B4_4100 at 4549.482 kb on - strand at 4549.482 kb on - strand at 4549.482 kb on - strand at 4549.569 kb on - strand at 4549.877 kb on - strand, within Pf1N1B4_4101 at 4549.881 kb on - strand, within Pf1N1B4_4101 at 4549.909 kb on - strand, within Pf1N1B4_4101 at 4550.033 kb on + strand, within Pf1N1B4_4101 at 4550.033 kb on + strand, within Pf1N1B4_4101 at 4550.034 kb on - strand, within Pf1N1B4_4101 at 4550.061 kb on + strand, within Pf1N1B4_4101 at 4550.062 kb on - strand, within Pf1N1B4_4101 at 4550.099 kb on - strand at 4550.099 kb on - strand, within Pf1N1B4_4101 at 4550.099 kb on - strand, within Pf1N1B4_4101 at 4550.099 kb on - strand, within Pf1N1B4_4101 at 4550.099 kb on - strand, within Pf1N1B4_4101 at 4550.099 kb on - strand at 4550.121 kb on - strand, within Pf1N1B4_4101 at 4550.381 kb on + strand, within Pf1N1B4_4101 at 4550.382 kb on - strand, within Pf1N1B4_4101 at 4550.387 kb on - strand, within Pf1N1B4_4101 at 4550.402 kb on + strand, within Pf1N1B4_4101 at 4550.402 kb on + strand, within Pf1N1B4_4101 at 4550.402 kb on + strand, within Pf1N1B4_4101 at 4550.403 kb on - strand, within Pf1N1B4_4101 at 4550.403 kb on - strand, within Pf1N1B4_4101
Per-strain Table
Position Strand Gene LocusTag Fraction benzoic 0.58 mg/ml remove 4,547,839 + Pf1N1B4_4098 0.47 +0.4 4,547,889 + Pf1N1B4_4098 0.51 -0.5 4,547,913 - +0.7 4,548,192 + Pf1N1B4_4098 0.77 -1.9 4,548,222 + Pf1N1B4_4098 0.79 +0.4 4,548,222 + Pf1N1B4_4098 0.79 -0.3 4,548,223 - Pf1N1B4_4098 0.79 +1.4 4,548,289 - Pf1N1B4_4098 0.85 -1.9 4,548,342 + Pf1N1B4_4098 0.89 +0.4 4,548,342 + Pf1N1B4_4098 0.89 -0.3 4,548,342 + Pf1N1B4_4098 0.89 -0.9 4,548,612 - Pf1N1B4_4099 0.44 +0.7 4,548,612 - Pf1N1B4_4099 0.44 -0.6 4,548,614 + Pf1N1B4_4099 0.46 -0.0 4,548,614 + -0.3 4,548,615 - Pf1N1B4_4099 0.47 +1.3 4,548,712 + +1.3 4,548,712 + +0.8 4,548,712 + -0.2 4,548,713 - +0.7 4,548,713 - -0.6 4,548,879 - Pf1N1B4_4100 0.28 -1.3 4,548,907 + Pf1N1B4_4100 0.31 -1.2 4,548,908 - Pf1N1B4_4100 0.31 -1.1 4,548,908 - Pf1N1B4_4100 0.31 -0.3 4,548,908 - Pf1N1B4_4100 0.31 -0.9 4,549,161 - Pf1N1B4_4100 0.62 +0.2 4,549,482 - -1.6 4,549,482 - +1.7 4,549,482 - +0.2 4,549,569 - -0.9 4,549,877 - Pf1N1B4_4101 0.12 -0.7 4,549,881 - Pf1N1B4_4101 0.12 -0.5 4,549,909 - Pf1N1B4_4101 0.16 +1.1 4,550,033 + Pf1N1B4_4101 0.31 -1.1 4,550,033 + Pf1N1B4_4101 0.31 +0.4 4,550,034 - Pf1N1B4_4101 0.32 -0.8 4,550,061 + Pf1N1B4_4101 0.35 -0.6 4,550,062 - Pf1N1B4_4101 0.35 -1.3 4,550,099 - -0.9 4,550,099 - Pf1N1B4_4101 0.40 -0.6 4,550,099 - Pf1N1B4_4101 0.40 -1.9 4,550,099 - Pf1N1B4_4101 0.40 +0.0 4,550,099 - Pf1N1B4_4101 0.40 -1.5 4,550,099 - +0.7 4,550,121 - Pf1N1B4_4101 0.43 +0.7 4,550,381 + Pf1N1B4_4101 0.75 +0.4 4,550,382 - Pf1N1B4_4101 0.76 -1.6 4,550,387 - Pf1N1B4_4101 0.76 +0.1 4,550,402 + Pf1N1B4_4101 0.78 -1.6 4,550,402 + Pf1N1B4_4101 0.78 -0.6 4,550,402 + Pf1N1B4_4101 0.78 -0.1 4,550,403 - Pf1N1B4_4101 0.78 -1.3 4,550,403 - Pf1N1B4_4101 0.78 -0.9
Or see this region's nucleotide sequence