Experiment: benzoic 0.58 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_3705 and Pf1N1B4_3706 are separated by 487 nucleotides Pf1N1B4_3706 and Pf1N1B4_3707 are separated by 10 nucleotides
Pf1N1B4_3705 - FIG00961250: hypothetical protein, at 4,113,970 to 4,114,554
_3705
Pf1N1B4_3706 - Cob(I)alamin adenosyltransferase (EC 2.5.1.17), at 4,115,042 to 4,115,653
_3706
Pf1N1B4_3707 - Cobyrinic acid A,C-diamide synthase, at 4,115,664 to 4,117,046
_3707
Position (kb)
4115
4116 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 4114.050 kb on - strand, within Pf1N1B4_3705 at 4114.058 kb on + strand, within Pf1N1B4_3705 at 4114.058 kb on + strand, within Pf1N1B4_3705 at 4114.058 kb on + strand, within Pf1N1B4_3705 at 4114.059 kb on - strand, within Pf1N1B4_3705 at 4114.077 kb on + strand, within Pf1N1B4_3705 at 4114.077 kb on + strand, within Pf1N1B4_3705 at 4114.077 kb on + strand at 4114.077 kb on + strand, within Pf1N1B4_3705 at 4114.077 kb on + strand, within Pf1N1B4_3705 at 4114.077 kb on + strand, within Pf1N1B4_3705 at 4114.077 kb on + strand at 4114.078 kb on - strand, within Pf1N1B4_3705 at 4114.078 kb on - strand, within Pf1N1B4_3705 at 4114.187 kb on + strand, within Pf1N1B4_3705 at 4114.280 kb on + strand, within Pf1N1B4_3705 at 4114.280 kb on + strand, within Pf1N1B4_3705 at 4114.280 kb on + strand, within Pf1N1B4_3705 at 4114.440 kb on - strand, within Pf1N1B4_3705 at 4114.570 kb on + strand at 4114.570 kb on + strand at 4114.637 kb on + strand at 4114.638 kb on - strand at 4114.638 kb on - strand at 4114.655 kb on + strand at 4114.698 kb on + strand at 4114.846 kb on + strand at 4114.847 kb on - strand at 4114.993 kb on + strand at 4114.994 kb on - strand at 4114.994 kb on - strand at 4115.664 kb on - strand at 4115.664 kb on - strand at 4115.664 kb on - strand at 4115.850 kb on + strand, within Pf1N1B4_3707 at 4115.896 kb on + strand, within Pf1N1B4_3707 at 4115.897 kb on - strand, within Pf1N1B4_3707 at 4116.417 kb on - strand, within Pf1N1B4_3707 at 4116.420 kb on + strand, within Pf1N1B4_3707 at 4116.517 kb on - strand at 4116.517 kb on - strand, within Pf1N1B4_3707 at 4116.550 kb on + strand at 4116.550 kb on + strand, within Pf1N1B4_3707 at 4116.550 kb on + strand, within Pf1N1B4_3707 at 4116.550 kb on + strand, within Pf1N1B4_3707 at 4116.550 kb on + strand, within Pf1N1B4_3707 at 4116.550 kb on + strand, within Pf1N1B4_3707 at 4116.551 kb on - strand, within Pf1N1B4_3707 at 4116.551 kb on - strand, within Pf1N1B4_3707 at 4116.642 kb on + strand, within Pf1N1B4_3707 at 4116.642 kb on + strand, within Pf1N1B4_3707 at 4116.642 kb on + strand, within Pf1N1B4_3707 at 4116.643 kb on - strand, within Pf1N1B4_3707
Per-strain Table
Position Strand Gene LocusTag Fraction benzoic 0.58 mg/ml remove 4,114,050 - Pf1N1B4_3705 0.14 -1.3 4,114,058 + Pf1N1B4_3705 0.15 +0.8 4,114,058 + Pf1N1B4_3705 0.15 +0.0 4,114,058 + Pf1N1B4_3705 0.15 +0.1 4,114,059 - Pf1N1B4_3705 0.15 +0.8 4,114,077 + Pf1N1B4_3705 0.18 -0.2 4,114,077 + Pf1N1B4_3705 0.18 +0.5 4,114,077 + -0.8 4,114,077 + Pf1N1B4_3705 0.18 +0.7 4,114,077 + Pf1N1B4_3705 0.18 +0.8 4,114,077 + Pf1N1B4_3705 0.18 +0.9 4,114,077 + -1.2 4,114,078 - Pf1N1B4_3705 0.18 +0.8 4,114,078 - Pf1N1B4_3705 0.18 -0.8 4,114,187 + Pf1N1B4_3705 0.37 -2.0 4,114,280 + Pf1N1B4_3705 0.53 -1.2 4,114,280 + Pf1N1B4_3705 0.53 -0.2 4,114,280 + Pf1N1B4_3705 0.53 -0.8 4,114,440 - Pf1N1B4_3705 0.80 -0.1 4,114,570 + -0.2 4,114,570 + -0.1 4,114,637 + -1.4 4,114,638 - +0.5 4,114,638 - -0.2 4,114,655 + +0.8 4,114,698 + -1.2 4,114,846 + -0.5 4,114,847 - +0.6 4,114,993 + +0.6 4,114,994 - +0.4 4,114,994 - -0.1 4,115,664 - -0.5 4,115,664 - +0.2 4,115,664 - -0.8 4,115,850 + Pf1N1B4_3707 0.13 -0.9 4,115,896 + Pf1N1B4_3707 0.17 -0.8 4,115,897 - Pf1N1B4_3707 0.17 -0.2 4,116,417 - Pf1N1B4_3707 0.54 -0.2 4,116,420 + Pf1N1B4_3707 0.55 +0.8 4,116,517 - +2.8 4,116,517 - Pf1N1B4_3707 0.62 -0.5 4,116,550 + +1.8 4,116,550 + Pf1N1B4_3707 0.64 -2.3 4,116,550 + Pf1N1B4_3707 0.64 -1.5 4,116,550 + Pf1N1B4_3707 0.64 -0.2 4,116,550 + Pf1N1B4_3707 0.64 -0.8 4,116,550 + Pf1N1B4_3707 0.64 +0.1 4,116,551 - Pf1N1B4_3707 0.64 -0.3 4,116,551 - Pf1N1B4_3707 0.64 +1.8 4,116,642 + Pf1N1B4_3707 0.71 +0.2 4,116,642 + Pf1N1B4_3707 0.71 -1.2 4,116,642 + Pf1N1B4_3707 0.71 -0.8 4,116,643 - Pf1N1B4_3707 0.71 -0.5
Or see this region's nucleotide sequence