Experiment: benzoic 0.58 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_3632 and Pf1N1B4_3633 are separated by 43 nucleotides Pf1N1B4_3633 and Pf1N1B4_3634 are separated by 117 nucleotides Pf1N1B4_3634 and Pf1N1B4_3635 are separated by 88 nucleotides Pf1N1B4_3635 and Pf1N1B4_3636 are separated by 0 nucleotides
Pf1N1B4_3632 - Flagellar motor rotation protein MotB, at 4,040,614 to 4,041,507
_3632
Pf1N1B4_3633 - Chromosome (plasmid) partitioning protein ParA, at 4,041,551 to 4,042,339
_3633
Pf1N1B4_3634 - CheW domain protein, at 4,042,457 to 4,043,332
_3634
Pf1N1B4_3635 - Positive regulator of CheA protein activity (CheW), at 4,043,421 to 4,043,906
_3635
Pf1N1B4_3636 - FIG00953562: hypothetical protein, at 4,043,907 to 4,044,299
_3636
Position (kb)
4042
4043
4044 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4041.497 kb on + strand at 4041.500 kb on + strand at 4041.500 kb on + strand at 4041.501 kb on - strand at 4041.501 kb on - strand at 4041.501 kb on - strand at 4041.501 kb on - strand at 4041.501 kb on - strand at 4041.501 kb on - strand at 4041.510 kb on + strand at 4041.510 kb on + strand at 4041.511 kb on - strand at 4041.511 kb on - strand at 4041.511 kb on - strand at 4042.193 kb on + strand, within Pf1N1B4_3633 at 4042.193 kb on + strand at 4042.193 kb on + strand, within Pf1N1B4_3633 at 4042.194 kb on - strand, within Pf1N1B4_3633 at 4042.442 kb on + strand at 4042.442 kb on + strand at 4042.443 kb on - strand at 4042.509 kb on - strand at 4042.934 kb on - strand, within Pf1N1B4_3634 at 4043.093 kb on + strand, within Pf1N1B4_3634 at 4043.093 kb on + strand, within Pf1N1B4_3634 at 4043.093 kb on + strand, within Pf1N1B4_3634 at 4043.093 kb on + strand, within Pf1N1B4_3634 at 4043.093 kb on + strand, within Pf1N1B4_3634 at 4043.098 kb on + strand, within Pf1N1B4_3634 at 4043.098 kb on + strand, within Pf1N1B4_3634 at 4043.099 kb on - strand, within Pf1N1B4_3634 at 4043.115 kb on - strand, within Pf1N1B4_3634 at 4043.330 kb on + strand at 4043.330 kb on + strand at 4043.330 kb on + strand at 4043.330 kb on + strand at 4043.330 kb on + strand at 4043.330 kb on + strand at 4043.331 kb on - strand at 4043.331 kb on - strand at 4043.331 kb on - strand at 4043.342 kb on + strand at 4043.342 kb on + strand at 4043.342 kb on + strand at 4043.342 kb on + strand at 4043.343 kb on - strand at 4043.343 kb on - strand at 4043.349 kb on + strand at 4043.349 kb on + strand at 4043.349 kb on + strand at 4043.350 kb on - strand at 4043.350 kb on - strand at 4043.426 kb on + strand at 4043.502 kb on + strand, within Pf1N1B4_3635 at 4043.541 kb on + strand, within Pf1N1B4_3635 at 4043.745 kb on + strand, within Pf1N1B4_3635 at 4043.900 kb on + strand at 4043.976 kb on + strand, within Pf1N1B4_3636 at 4043.977 kb on - strand, within Pf1N1B4_3636
Per-strain Table
Position Strand Gene LocusTag Fraction benzoic 0.58 mg/ml remove 4,041,497 + +0.1 4,041,500 + -1.0 4,041,500 + +0.1 4,041,501 - -0.5 4,041,501 - -0.2 4,041,501 - -1.0 4,041,501 - +0.8 4,041,501 - -0.2 4,041,501 - -1.8 4,041,510 + +0.1 4,041,510 + -1.0 4,041,511 - -0.5 4,041,511 - -0.8 4,041,511 - +1.4 4,042,193 + Pf1N1B4_3633 0.81 -0.7 4,042,193 + -0.8 4,042,193 + Pf1N1B4_3633 0.81 -1.0 4,042,194 - Pf1N1B4_3633 0.81 -1.0 4,042,442 + -1.8 4,042,442 + +0.8 4,042,443 - +0.4 4,042,509 - -0.2 4,042,934 - Pf1N1B4_3634 0.54 -1.3 4,043,093 + Pf1N1B4_3634 0.73 -1.2 4,043,093 + Pf1N1B4_3634 0.73 +0.1 4,043,093 + Pf1N1B4_3634 0.73 -0.2 4,043,093 + Pf1N1B4_3634 0.73 -0.0 4,043,093 + Pf1N1B4_3634 0.73 -0.7 4,043,098 + Pf1N1B4_3634 0.73 -0.3 4,043,098 + Pf1N1B4_3634 0.73 -1.4 4,043,099 - Pf1N1B4_3634 0.73 -1.8 4,043,115 - Pf1N1B4_3634 0.75 -2.0 4,043,330 + -0.5 4,043,330 + +1.8 4,043,330 + -0.8 4,043,330 + -0.0 4,043,330 + -0.2 4,043,330 + +0.8 4,043,331 - -0.9 4,043,331 - -0.5 4,043,331 - +1.2 4,043,342 + -0.2 4,043,342 + +1.7 4,043,342 + -0.8 4,043,342 + +0.8 4,043,343 - -1.0 4,043,343 - -0.2 4,043,349 + -0.2 4,043,349 + +1.3 4,043,349 + +1.6 4,043,350 - -0.8 4,043,350 - -1.2 4,043,426 + +1.1 4,043,502 + Pf1N1B4_3635 0.17 +0.4 4,043,541 + Pf1N1B4_3635 0.25 +0.0 4,043,745 + Pf1N1B4_3635 0.67 +0.5 4,043,900 + -0.1 4,043,976 + Pf1N1B4_3636 0.18 -0.3 4,043,977 - Pf1N1B4_3636 0.18 -0.0
Or see this region's nucleotide sequence