Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_3356

Experiment: benzoic 0.58 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_3354 and Pf1N1B4_3355 are separated by 96 nucleotidesPf1N1B4_3355 and Pf1N1B4_3356 overlap by 4 nucleotidesPf1N1B4_3356 and Pf1N1B4_3357 are separated by 165 nucleotides Pf1N1B4_3354 - FIG00954793: hypothetical protein, at 3,740,471 to 3,741,157 _3354 Pf1N1B4_3355 - FIG00955239: hypothetical protein, at 3,741,254 to 3,741,544 _3355 Pf1N1B4_3356 - Cyclic nucleotide-binding protein, at 3,741,541 to 3,742,065 _3356 Pf1N1B4_3357 - Protease II (EC 3.4.21.83), at 3,742,231 to 3,744,285 _3357 Position (kb) 3741 3742 3743Strain fitness (log2 ratio) -2 -1 0 1at 3740.671 kb on - strand, within Pf1N1B4_3354at 3740.671 kb on - strandat 3740.783 kb on - strand, within Pf1N1B4_3354at 3740.783 kb on - strand, within Pf1N1B4_3354at 3741.088 kb on - strand, within Pf1N1B4_3354at 3741.184 kb on + strandat 3741.184 kb on + strandat 3741.185 kb on - strandat 3741.185 kb on - strandat 3741.998 kb on - strand, within Pf1N1B4_3356at 3741.998 kb on - strand, within Pf1N1B4_3356at 3742.204 kb on + strandat 3742.204 kb on + strandat 3742.204 kb on + strandat 3742.204 kb on + strandat 3742.205 kb on - strandat 3742.276 kb on + strandat 3742.277 kb on - strandat 3742.286 kb on - strandat 3742.286 kb on - strandat 3742.286 kb on - strandat 3742.286 kb on - strandat 3742.407 kb on - strandat 3742.407 kb on - strandat 3742.488 kb on - strand, within Pf1N1B4_3357at 3742.488 kb on - strand, within Pf1N1B4_3357at 3742.505 kb on + strand, within Pf1N1B4_3357at 3742.505 kb on + strand, within Pf1N1B4_3357at 3742.505 kb on + strand, within Pf1N1B4_3357at 3742.506 kb on - strand, within Pf1N1B4_3357at 3742.506 kb on - strand, within Pf1N1B4_3357at 3742.541 kb on + strand, within Pf1N1B4_3357at 3742.542 kb on - strand, within Pf1N1B4_3357at 3742.825 kb on + strand, within Pf1N1B4_3357at 3742.825 kb on + strand, within Pf1N1B4_3357at 3742.826 kb on - strand, within Pf1N1B4_3357at 3742.928 kb on + strand, within Pf1N1B4_3357at 3742.928 kb on + strand, within Pf1N1B4_3357at 3743.027 kb on + strand, within Pf1N1B4_3357at 3743.027 kb on + strand, within Pf1N1B4_3357at 3743.027 kb on + strand, within Pf1N1B4_3357at 3743.028 kb on - strand, within Pf1N1B4_3357at 3743.028 kb on - strand, within Pf1N1B4_3357at 3743.028 kb on - strand, within Pf1N1B4_3357

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Per-strain Table

Position Strand Gene LocusTag Fraction benzoic 0.58 mg/ml
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3,740,671 - Pf1N1B4_3354 0.29 -0.3
3,740,671 - +0.9
3,740,783 - Pf1N1B4_3354 0.45 -0.7
3,740,783 - Pf1N1B4_3354 0.45 -0.0
3,741,088 - Pf1N1B4_3354 0.90 -0.0
3,741,184 + +0.2
3,741,184 + +0.0
3,741,185 - +0.3
3,741,185 - -0.7
3,741,998 - Pf1N1B4_3356 0.87 -2.2
3,741,998 - Pf1N1B4_3356 0.87 -0.8
3,742,204 + -1.3
3,742,204 + -0.8
3,742,204 + +0.2
3,742,204 + -0.2
3,742,205 - +0.1
3,742,276 + -1.7
3,742,277 - -0.7
3,742,286 - -1.1
3,742,286 - -0.5
3,742,286 - +0.1
3,742,286 - +0.9
3,742,407 - -0.3
3,742,407 - -1.2
3,742,488 - Pf1N1B4_3357 0.13 -0.1
3,742,488 - Pf1N1B4_3357 0.13 +0.7
3,742,505 + Pf1N1B4_3357 0.13 +0.9
3,742,505 + Pf1N1B4_3357 0.13 +1.2
3,742,505 + Pf1N1B4_3357 0.13 -0.4
3,742,506 - Pf1N1B4_3357 0.13 -0.7
3,742,506 - Pf1N1B4_3357 0.13 -1.4
3,742,541 + Pf1N1B4_3357 0.15 +0.9
3,742,542 - Pf1N1B4_3357 0.15 +0.3
3,742,825 + Pf1N1B4_3357 0.29 +0.2
3,742,825 + Pf1N1B4_3357 0.29 -0.1
3,742,826 - Pf1N1B4_3357 0.29 -1.2
3,742,928 + Pf1N1B4_3357 0.34 -2.1
3,742,928 + Pf1N1B4_3357 0.34 -0.7
3,743,027 + Pf1N1B4_3357 0.39 -2.0
3,743,027 + Pf1N1B4_3357 0.39 +0.6
3,743,027 + Pf1N1B4_3357 0.39 -0.6
3,743,028 - Pf1N1B4_3357 0.39 -0.1
3,743,028 - Pf1N1B4_3357 0.39 +0.7
3,743,028 - Pf1N1B4_3357 0.39 +0.2

Or see this region's nucleotide sequence