Experiment: benzoic 0.58 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_3354 and Pf1N1B4_3355 are separated by 96 nucleotides Pf1N1B4_3355 and Pf1N1B4_3356 overlap by 4 nucleotides Pf1N1B4_3356 and Pf1N1B4_3357 are separated by 165 nucleotides
Pf1N1B4_3354 - FIG00954793: hypothetical protein, at 3,740,471 to 3,741,157
_3354
Pf1N1B4_3355 - FIG00955239: hypothetical protein, at 3,741,254 to 3,741,544
_3355
Pf1N1B4_3356 - Cyclic nucleotide-binding protein, at 3,741,541 to 3,742,065
_3356
Pf1N1B4_3357 - Protease II (EC 3.4.21.83), at 3,742,231 to 3,744,285
_3357
Position (kb)
3741
3742
3743 Strain fitness (log2 ratio)
-2
-1
0
1 at 3740.671 kb on - strand, within Pf1N1B4_3354 at 3740.671 kb on - strand at 3740.783 kb on - strand, within Pf1N1B4_3354 at 3740.783 kb on - strand, within Pf1N1B4_3354 at 3741.088 kb on - strand, within Pf1N1B4_3354 at 3741.184 kb on + strand at 3741.184 kb on + strand at 3741.185 kb on - strand at 3741.185 kb on - strand at 3741.998 kb on - strand, within Pf1N1B4_3356 at 3741.998 kb on - strand, within Pf1N1B4_3356 at 3742.204 kb on + strand at 3742.204 kb on + strand at 3742.204 kb on + strand at 3742.204 kb on + strand at 3742.205 kb on - strand at 3742.276 kb on + strand at 3742.277 kb on - strand at 3742.286 kb on - strand at 3742.286 kb on - strand at 3742.286 kb on - strand at 3742.286 kb on - strand at 3742.407 kb on - strand at 3742.407 kb on - strand at 3742.488 kb on - strand, within Pf1N1B4_3357 at 3742.488 kb on - strand, within Pf1N1B4_3357 at 3742.505 kb on + strand, within Pf1N1B4_3357 at 3742.505 kb on + strand, within Pf1N1B4_3357 at 3742.505 kb on + strand, within Pf1N1B4_3357 at 3742.506 kb on - strand, within Pf1N1B4_3357 at 3742.506 kb on - strand, within Pf1N1B4_3357 at 3742.541 kb on + strand, within Pf1N1B4_3357 at 3742.542 kb on - strand, within Pf1N1B4_3357 at 3742.825 kb on + strand, within Pf1N1B4_3357 at 3742.825 kb on + strand, within Pf1N1B4_3357 at 3742.826 kb on - strand, within Pf1N1B4_3357 at 3742.928 kb on + strand, within Pf1N1B4_3357 at 3742.928 kb on + strand, within Pf1N1B4_3357 at 3743.027 kb on + strand, within Pf1N1B4_3357 at 3743.027 kb on + strand, within Pf1N1B4_3357 at 3743.027 kb on + strand, within Pf1N1B4_3357 at 3743.028 kb on - strand, within Pf1N1B4_3357 at 3743.028 kb on - strand, within Pf1N1B4_3357 at 3743.028 kb on - strand, within Pf1N1B4_3357
Per-strain Table
Position Strand Gene LocusTag Fraction benzoic 0.58 mg/ml remove 3,740,671 - Pf1N1B4_3354 0.29 -0.3 3,740,671 - +0.9 3,740,783 - Pf1N1B4_3354 0.45 -0.7 3,740,783 - Pf1N1B4_3354 0.45 -0.0 3,741,088 - Pf1N1B4_3354 0.90 -0.0 3,741,184 + +0.2 3,741,184 + +0.0 3,741,185 - +0.3 3,741,185 - -0.7 3,741,998 - Pf1N1B4_3356 0.87 -2.2 3,741,998 - Pf1N1B4_3356 0.87 -0.8 3,742,204 + -1.3 3,742,204 + -0.8 3,742,204 + +0.2 3,742,204 + -0.2 3,742,205 - +0.1 3,742,276 + -1.7 3,742,277 - -0.7 3,742,286 - -1.1 3,742,286 - -0.5 3,742,286 - +0.1 3,742,286 - +0.9 3,742,407 - -0.3 3,742,407 - -1.2 3,742,488 - Pf1N1B4_3357 0.13 -0.1 3,742,488 - Pf1N1B4_3357 0.13 +0.7 3,742,505 + Pf1N1B4_3357 0.13 +0.9 3,742,505 + Pf1N1B4_3357 0.13 +1.2 3,742,505 + Pf1N1B4_3357 0.13 -0.4 3,742,506 - Pf1N1B4_3357 0.13 -0.7 3,742,506 - Pf1N1B4_3357 0.13 -1.4 3,742,541 + Pf1N1B4_3357 0.15 +0.9 3,742,542 - Pf1N1B4_3357 0.15 +0.3 3,742,825 + Pf1N1B4_3357 0.29 +0.2 3,742,825 + Pf1N1B4_3357 0.29 -0.1 3,742,826 - Pf1N1B4_3357 0.29 -1.2 3,742,928 + Pf1N1B4_3357 0.34 -2.1 3,742,928 + Pf1N1B4_3357 0.34 -0.7 3,743,027 + Pf1N1B4_3357 0.39 -2.0 3,743,027 + Pf1N1B4_3357 0.39 +0.6 3,743,027 + Pf1N1B4_3357 0.39 -0.6 3,743,028 - Pf1N1B4_3357 0.39 -0.1 3,743,028 - Pf1N1B4_3357 0.39 +0.7 3,743,028 - Pf1N1B4_3357 0.39 +0.2
Or see this region's nucleotide sequence