Experiment: benzoic 0.58 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_2846 and Pf1N1B4_2847 are separated by 106 nucleotides Pf1N1B4_2847 and Pf1N1B4_2848 are separated by 409 nucleotides
Pf1N1B4_2846 - putative exported protein, at 3,190,015 to 3,192,960
_2846
Pf1N1B4_2847 - Methyltransferase (EC 2.1.1.-), at 3,193,067 to 3,194,083
_2847
Pf1N1B4_2848 - Mobile element protein, at 3,194,493 to 3,195,521
_2848
Position (kb)
3193
3194
3195 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3192.073 kb on + strand, within Pf1N1B4_2846 at 3192.168 kb on + strand, within Pf1N1B4_2846 at 3192.168 kb on + strand, within Pf1N1B4_2846 at 3192.168 kb on + strand, within Pf1N1B4_2846 at 3192.168 kb on + strand, within Pf1N1B4_2846 at 3192.169 kb on - strand, within Pf1N1B4_2846 at 3192.169 kb on - strand, within Pf1N1B4_2846 at 3192.169 kb on - strand, within Pf1N1B4_2846 at 3192.172 kb on + strand, within Pf1N1B4_2846 at 3192.173 kb on - strand, within Pf1N1B4_2846 at 3192.173 kb on - strand, within Pf1N1B4_2846 at 3192.173 kb on - strand, within Pf1N1B4_2846 at 3192.269 kb on + strand, within Pf1N1B4_2846 at 3192.312 kb on + strand, within Pf1N1B4_2846 at 3192.312 kb on + strand, within Pf1N1B4_2846 at 3192.313 kb on - strand, within Pf1N1B4_2846 at 3192.486 kb on + strand, within Pf1N1B4_2846 at 3192.625 kb on - strand at 3192.836 kb on + strand at 3192.836 kb on + strand at 3192.837 kb on - strand at 3192.880 kb on + strand at 3192.903 kb on + strand at 3192.904 kb on - strand at 3192.999 kb on - strand at 3193.036 kb on - strand at 3193.037 kb on + strand at 3193.037 kb on + strand at 3193.037 kb on + strand at 3193.037 kb on + strand at 3193.044 kb on + strand at 3193.044 kb on + strand at 3193.044 kb on + strand at 3193.045 kb on - strand at 3193.045 kb on - strand at 3193.045 kb on - strand at 3193.045 kb on - strand at 3193.245 kb on - strand, within Pf1N1B4_2847 at 3193.356 kb on - strand, within Pf1N1B4_2847 at 3193.365 kb on + strand, within Pf1N1B4_2847 at 3193.389 kb on + strand, within Pf1N1B4_2847 at 3193.389 kb on + strand, within Pf1N1B4_2847 at 3193.389 kb on + strand, within Pf1N1B4_2847 at 3193.389 kb on + strand, within Pf1N1B4_2847 at 3193.390 kb on - strand, within Pf1N1B4_2847 at 3193.390 kb on - strand, within Pf1N1B4_2847 at 3193.458 kb on + strand, within Pf1N1B4_2847 at 3193.459 kb on - strand, within Pf1N1B4_2847 at 3193.553 kb on - strand, within Pf1N1B4_2847 at 3193.605 kb on + strand, within Pf1N1B4_2847 at 3193.606 kb on - strand, within Pf1N1B4_2847 at 3193.810 kb on + strand, within Pf1N1B4_2847 at 3194.123 kb on + strand at 3194.123 kb on + strand at 3194.124 kb on - strand at 3194.150 kb on - strand at 3194.150 kb on - strand at 3194.150 kb on - strand at 3194.150 kb on - strand at 3194.155 kb on + strand at 3194.155 kb on + strand at 3194.242 kb on - strand at 3194.242 kb on - strand at 3194.242 kb on - strand at 3194.242 kb on - strand at 3194.242 kb on - strand at 3194.248 kb on - strand at 3194.248 kb on - strand at 3194.248 kb on - strand at 3194.248 kb on - strand at 3194.248 kb on - strand at 3194.248 kb on - strand at 3194.248 kb on - strand at 3194.248 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction benzoic 0.58 mg/ml remove 3,192,073 + Pf1N1B4_2846 0.70 +0.3 3,192,168 + Pf1N1B4_2846 0.73 +0.5 3,192,168 + Pf1N1B4_2846 0.73 +0.4 3,192,168 + Pf1N1B4_2846 0.73 +0.4 3,192,168 + Pf1N1B4_2846 0.73 -1.9 3,192,169 - Pf1N1B4_2846 0.73 +0.1 3,192,169 - Pf1N1B4_2846 0.73 +1.5 3,192,169 - Pf1N1B4_2846 0.73 -0.4 3,192,172 + Pf1N1B4_2846 0.73 -0.2 3,192,173 - Pf1N1B4_2846 0.73 -2.0 3,192,173 - Pf1N1B4_2846 0.73 -1.2 3,192,173 - Pf1N1B4_2846 0.73 -0.5 3,192,269 + Pf1N1B4_2846 0.77 +0.7 3,192,312 + Pf1N1B4_2846 0.78 -0.5 3,192,312 + Pf1N1B4_2846 0.78 -0.8 3,192,313 - Pf1N1B4_2846 0.78 -0.6 3,192,486 + Pf1N1B4_2846 0.84 -1.0 3,192,625 - +1.1 3,192,836 + +1.7 3,192,836 + -0.9 3,192,837 - +0.1 3,192,880 + -2.2 3,192,903 + -1.5 3,192,904 - +2.1 3,192,999 - +1.4 3,193,036 - -0.5 3,193,037 + -1.9 3,193,037 + +0.9 3,193,037 + -1.5 3,193,037 + -1.2 3,193,044 + +1.1 3,193,044 + -0.5 3,193,044 + -0.5 3,193,045 - -0.2 3,193,045 - -0.2 3,193,045 - -0.8 3,193,045 - +0.1 3,193,245 - Pf1N1B4_2847 0.18 +0.4 3,193,356 - Pf1N1B4_2847 0.28 -0.9 3,193,365 + Pf1N1B4_2847 0.29 -1.9 3,193,389 + Pf1N1B4_2847 0.32 +0.4 3,193,389 + Pf1N1B4_2847 0.32 +0.5 3,193,389 + Pf1N1B4_2847 0.32 +0.5 3,193,389 + Pf1N1B4_2847 0.32 -0.7 3,193,390 - Pf1N1B4_2847 0.32 -0.8 3,193,390 - Pf1N1B4_2847 0.32 -1.9 3,193,458 + Pf1N1B4_2847 0.38 -1.7 3,193,459 - Pf1N1B4_2847 0.39 -0.9 3,193,553 - Pf1N1B4_2847 0.48 -1.9 3,193,605 + Pf1N1B4_2847 0.53 -1.5 3,193,606 - Pf1N1B4_2847 0.53 -0.6 3,193,810 + Pf1N1B4_2847 0.73 -0.8 3,194,123 + -0.7 3,194,123 + -0.5 3,194,124 - -2.2 3,194,150 - -0.9 3,194,150 - +1.7 3,194,150 - +0.6 3,194,150 - -0.5 3,194,155 + -0.2 3,194,155 + +0.1 3,194,242 - -0.9 3,194,242 - +0.1 3,194,242 - +0.8 3,194,242 - +1.5 3,194,242 - +0.5 3,194,248 - -1.3 3,194,248 - -0.4 3,194,248 - -0.1 3,194,248 - +0.4 3,194,248 - -0.5 3,194,248 - +1.8 3,194,248 - -1.3 3,194,248 - -1.7
Or see this region's nucleotide sequence