Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_1679

Experiment: benzoic 0.58 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_1678 and Pf1N1B4_1679 are separated by 281 nucleotidesPf1N1B4_1679 and Pf1N1B4_1680 overlap by 4 nucleotides Pf1N1B4_1678 - Outer membrane component of tripartite multidrug resistance system, at 1,923,506 to 1,924,939 _1678 Pf1N1B4_1679 - Membrane-fusion protein, at 1,925,221 to 1,926,003 _1679 Pf1N1B4_1680 - Probable membrane-fusion protein, at 1,926,000 to 1,927,319 _1680 Position (kb) 1925 1926 1927Strain fitness (log2 ratio) -2 -1 0 1 2at 1924.374 kb on + strand, within Pf1N1B4_1678at 1924.374 kb on + strand, within Pf1N1B4_1678at 1924.374 kb on + strand, within Pf1N1B4_1678at 1924.374 kb on + strand, within Pf1N1B4_1678at 1924.374 kb on + strand, within Pf1N1B4_1678at 1924.374 kb on + strand, within Pf1N1B4_1678at 1924.374 kb on + strand, within Pf1N1B4_1678at 1924.374 kb on + strand, within Pf1N1B4_1678at 1924.374 kb on + strand, within Pf1N1B4_1678at 1924.374 kb on + strand, within Pf1N1B4_1678at 1924.374 kb on + strand, within Pf1N1B4_1678at 1924.374 kb on + strand, within Pf1N1B4_1678at 1924.375 kb on - strand, within Pf1N1B4_1678at 1924.375 kb on - strand, within Pf1N1B4_1678at 1924.375 kb on - strand, within Pf1N1B4_1678at 1924.375 kb on - strand, within Pf1N1B4_1678at 1924.375 kb on - strand, within Pf1N1B4_1678at 1924.375 kb on - strand, within Pf1N1B4_1678at 1924.375 kb on - strand, within Pf1N1B4_1678at 1924.375 kb on - strand, within Pf1N1B4_1678at 1924.375 kb on - strand, within Pf1N1B4_1678at 1924.375 kb on - strand, within Pf1N1B4_1678at 1924.489 kb on - strand, within Pf1N1B4_1678at 1924.622 kb on + strand, within Pf1N1B4_1678at 1924.623 kb on - strand, within Pf1N1B4_1678at 1924.623 kb on - strand, within Pf1N1B4_1678at 1924.677 kb on - strand, within Pf1N1B4_1678at 1924.760 kb on + strand, within Pf1N1B4_1678at 1924.760 kb on + strand, within Pf1N1B4_1678at 1924.760 kb on + strand, within Pf1N1B4_1678at 1924.760 kb on + strand, within Pf1N1B4_1678at 1924.760 kb on + strand, within Pf1N1B4_1678at 1924.760 kb on + strand, within Pf1N1B4_1678at 1924.761 kb on - strand, within Pf1N1B4_1678at 1924.761 kb on - strand, within Pf1N1B4_1678at 1924.761 kb on - strand, within Pf1N1B4_1678at 1924.761 kb on - strand, within Pf1N1B4_1678at 1924.761 kb on - strand, within Pf1N1B4_1678at 1924.761 kb on - strand, within Pf1N1B4_1678at 1924.877 kb on + strandat 1924.877 kb on + strandat 1924.877 kb on + strandat 1924.877 kb on + strandat 1924.877 kb on + strandat 1924.877 kb on + strandat 1924.877 kb on + strandat 1924.878 kb on - strandat 1924.878 kb on - strandat 1924.878 kb on - strandat 1924.878 kb on - strandat 1924.878 kb on - strandat 1924.878 kb on - strandat 1924.878 kb on - strandat 1924.878 kb on - strandat 1924.879 kb on + strandat 1924.880 kb on - strandat 1924.880 kb on - strandat 1924.911 kb on - strandat 1925.005 kb on + strandat 1925.016 kb on + strandat 1925.016 kb on + strandat 1925.017 kb on - strandat 1925.025 kb on + strandat 1925.025 kb on + strandat 1925.026 kb on - strandat 1925.026 kb on - strandat 1925.039 kb on + strandat 1925.039 kb on + strandat 1925.053 kb on + strandat 1925.053 kb on + strandat 1925.054 kb on - strandat 1925.054 kb on - strandat 1925.054 kb on - strandat 1925.054 kb on - strandat 1925.087 kb on + strandat 1925.087 kb on + strandat 1925.087 kb on + strandat 1925.087 kb on + strandat 1925.088 kb on - strandat 1925.109 kb on + strandat 1925.110 kb on - strandat 1925.110 kb on - strandat 1925.118 kb on + strandat 1925.118 kb on + strandat 1925.118 kb on + strandat 1925.118 kb on + strandat 1925.119 kb on - strandat 1925.119 kb on - strandat 1925.119 kb on - strandat 1925.188 kb on + strandat 1925.188 kb on + strandat 1925.189 kb on - strandat 1925.215 kb on - strandat 1925.221 kb on - strandat 1925.252 kb on + strandat 1925.252 kb on + strandat 1925.261 kb on + strandat 1925.262 kb on - strandat 1925.270 kb on + strandat 1925.270 kb on + strandat 1925.271 kb on - strandat 1925.271 kb on - strandat 1925.273 kb on + strandat 1925.273 kb on + strandat 1925.274 kb on - strandat 1925.274 kb on - strandat 1925.488 kb on + strand, within Pf1N1B4_1679at 1925.489 kb on - strand, within Pf1N1B4_1679at 1925.644 kb on + strand, within Pf1N1B4_1679at 1925.651 kb on + strand, within Pf1N1B4_1679at 1926.099 kb on + strandat 1926.099 kb on + strandat 1926.100 kb on - strandat 1926.462 kb on + strand, within Pf1N1B4_1680at 1926.462 kb on + strand, within Pf1N1B4_1680at 1926.462 kb on + strand, within Pf1N1B4_1680at 1926.462 kb on + strand, within Pf1N1B4_1680at 1926.462 kb on + strand, within Pf1N1B4_1680at 1926.462 kb on + strand, within Pf1N1B4_1680at 1926.462 kb on + strand, within Pf1N1B4_1680at 1926.463 kb on - strand, within Pf1N1B4_1680at 1926.463 kb on - strand, within Pf1N1B4_1680at 1926.463 kb on - strand, within Pf1N1B4_1680at 1926.463 kb on - strand, within Pf1N1B4_1680at 1926.463 kb on - strandat 1926.463 kb on - strand, within Pf1N1B4_1680at 1926.879 kb on + strand, within Pf1N1B4_1680at 1926.880 kb on - strand, within Pf1N1B4_1680at 1926.911 kb on - strand, within Pf1N1B4_1680

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Per-strain Table

Position Strand Gene LocusTag Fraction benzoic 0.58 mg/ml
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1,924,374 + Pf1N1B4_1678 0.61 -0.6
1,924,374 + Pf1N1B4_1678 0.61 +0.4
1,924,374 + Pf1N1B4_1678 0.61 -1.0
1,924,374 + Pf1N1B4_1678 0.61 -0.6
1,924,374 + Pf1N1B4_1678 0.61 +1.4
1,924,374 + Pf1N1B4_1678 0.61 +0.6
1,924,374 + Pf1N1B4_1678 0.61 -1.4
1,924,374 + Pf1N1B4_1678 0.61 -0.0
1,924,374 + Pf1N1B4_1678 0.61 +0.2
1,924,374 + Pf1N1B4_1678 0.61 +0.5
1,924,374 + Pf1N1B4_1678 0.61 +0.0
1,924,374 + Pf1N1B4_1678 0.61 +1.0
1,924,375 - Pf1N1B4_1678 0.61 -0.4
1,924,375 - Pf1N1B4_1678 0.61 -0.2
1,924,375 - Pf1N1B4_1678 0.61 -0.8
1,924,375 - Pf1N1B4_1678 0.61 -0.8
1,924,375 - Pf1N1B4_1678 0.61 -0.5
1,924,375 - Pf1N1B4_1678 0.61 -0.6
1,924,375 - Pf1N1B4_1678 0.61 +0.2
1,924,375 - Pf1N1B4_1678 0.61 +1.0
1,924,375 - Pf1N1B4_1678 0.61 +0.8
1,924,375 - Pf1N1B4_1678 0.61 +0.1
1,924,489 - Pf1N1B4_1678 0.69 -1.5
1,924,622 + Pf1N1B4_1678 0.78 -0.6
1,924,623 - Pf1N1B4_1678 0.78 +0.4
1,924,623 - Pf1N1B4_1678 0.78 +0.4
1,924,677 - Pf1N1B4_1678 0.82 -0.6
1,924,760 + Pf1N1B4_1678 0.87 -0.1
1,924,760 + Pf1N1B4_1678 0.87 +0.0
1,924,760 + Pf1N1B4_1678 0.87 -0.4
1,924,760 + Pf1N1B4_1678 0.87 +0.6
1,924,760 + Pf1N1B4_1678 0.87 +0.4
1,924,760 + Pf1N1B4_1678 0.87 +0.0
1,924,761 - Pf1N1B4_1678 0.88 +0.8
1,924,761 - Pf1N1B4_1678 0.88 -1.4
1,924,761 - Pf1N1B4_1678 0.88 +0.2
1,924,761 - Pf1N1B4_1678 0.88 -1.3
1,924,761 - Pf1N1B4_1678 0.88 +1.4
1,924,761 - Pf1N1B4_1678 0.88 +1.4
1,924,877 + -0.6
1,924,877 + +0.2
1,924,877 + -0.4
1,924,877 + -0.8
1,924,877 + -0.2
1,924,877 + +0.6
1,924,877 + -0.3
1,924,878 - -1.4
1,924,878 - -1.4
1,924,878 - -1.8
1,924,878 - -0.6
1,924,878 - -0.6
1,924,878 - +0.5
1,924,878 - +0.0
1,924,878 - -0.7
1,924,879 + +0.0
1,924,880 - -0.4
1,924,880 - -2.1
1,924,911 - -0.6
1,925,005 + -0.1
1,925,016 + -0.1
1,925,016 + -0.1
1,925,017 - -0.5
1,925,025 + +0.9
1,925,025 + +0.2
1,925,026 - +0.1
1,925,026 - +0.7
1,925,039 + -0.2
1,925,039 + +1.0
1,925,053 + +1.6
1,925,053 + +0.9
1,925,054 - -1.0
1,925,054 - +0.4
1,925,054 - -0.8
1,925,054 - -0.2
1,925,087 + +1.9
1,925,087 + -0.2
1,925,087 + +0.9
1,925,087 + +0.5
1,925,088 - -0.5
1,925,109 + +0.5
1,925,110 - -0.4
1,925,110 - +0.7
1,925,118 + +0.6
1,925,118 + -1.2
1,925,118 + +0.4
1,925,118 + +0.2
1,925,119 - +1.1
1,925,119 - +0.9
1,925,119 - -0.0
1,925,188 + +0.4
1,925,188 + -1.2
1,925,189 - -0.4
1,925,215 - +0.1
1,925,221 - +0.4
1,925,252 + +0.6
1,925,252 + -0.1
1,925,261 + +1.8
1,925,262 - -1.2
1,925,270 + -0.6
1,925,270 + +0.8
1,925,271 - +0.4
1,925,271 - -2.1
1,925,273 + +0.0
1,925,273 + +0.6
1,925,274 - -1.0
1,925,274 - -1.6
1,925,488 + Pf1N1B4_1679 0.34 -0.6
1,925,489 - Pf1N1B4_1679 0.34 +0.1
1,925,644 + Pf1N1B4_1679 0.54 -1.6
1,925,651 + Pf1N1B4_1679 0.55 -0.2
1,926,099 + +0.7
1,926,099 + +0.6
1,926,100 - -0.2
1,926,462 + Pf1N1B4_1680 0.35 -1.0
1,926,462 + Pf1N1B4_1680 0.35 +0.4
1,926,462 + Pf1N1B4_1680 0.35 -0.6
1,926,462 + Pf1N1B4_1680 0.35 +0.5
1,926,462 + Pf1N1B4_1680 0.35 +1.4
1,926,462 + Pf1N1B4_1680 0.35 +0.0
1,926,462 + Pf1N1B4_1680 0.35 -0.8
1,926,463 - Pf1N1B4_1680 0.35 +0.5
1,926,463 - Pf1N1B4_1680 0.35 +0.4
1,926,463 - Pf1N1B4_1680 0.35 +1.4
1,926,463 - Pf1N1B4_1680 0.35 +0.5
1,926,463 - -1.6
1,926,463 - Pf1N1B4_1680 0.35 +1.4
1,926,879 + Pf1N1B4_1680 0.67 -1.6
1,926,880 - Pf1N1B4_1680 0.67 -0.2
1,926,911 - Pf1N1B4_1680 0.69 +0.8

Or see this region's nucleotide sequence