Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_1142

Experiment: benzoic 0.58 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_1141 and Pf1N1B4_1142 are separated by 307 nucleotidesPf1N1B4_1142 and Pf1N1B4_1143 are separated by 172 nucleotides Pf1N1B4_1141 - Ferrichrome-iron receptor, at 1,279,805 to 1,282,063 _1141 Pf1N1B4_1142 - Uncharacterized iron-regulated membrane protein; Iron-uptake factor PiuB, at 1,282,371 to 1,284,899 _1142 Pf1N1B4_1143 - Phosphodiesterase/alkaline phosphatase D, at 1,285,072 to 1,286,613 _1143 Position (kb) 1282 1283 1284 1285Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1281.386 kb on + strand, within Pf1N1B4_1141at 1281.396 kb on - strand, within Pf1N1B4_1141at 1281.494 kb on + strand, within Pf1N1B4_1141at 1281.494 kb on + strand, within Pf1N1B4_1141at 1281.495 kb on - strand, within Pf1N1B4_1141at 1281.612 kb on + strand, within Pf1N1B4_1141at 1281.612 kb on + strand, within Pf1N1B4_1141at 1281.612 kb on + strand, within Pf1N1B4_1141at 1281.613 kb on - strand, within Pf1N1B4_1141at 1281.613 kb on - strand, within Pf1N1B4_1141at 1281.613 kb on - strand, within Pf1N1B4_1141at 1281.613 kb on - strand, within Pf1N1B4_1141at 1281.654 kb on - strand, within Pf1N1B4_1141at 1281.654 kb on - strand, within Pf1N1B4_1141at 1281.654 kb on - strand, within Pf1N1B4_1141at 1281.654 kb on - strand, within Pf1N1B4_1141at 1281.701 kb on + strand, within Pf1N1B4_1141at 1281.701 kb on + strand, within Pf1N1B4_1141at 1281.701 kb on + strand, within Pf1N1B4_1141at 1281.701 kb on + strand, within Pf1N1B4_1141at 1281.701 kb on + strand, within Pf1N1B4_1141at 1281.701 kb on + strand, within Pf1N1B4_1141at 1281.701 kb on + strand, within Pf1N1B4_1141at 1281.701 kb on + strand, within Pf1N1B4_1141at 1281.701 kb on + strand, within Pf1N1B4_1141at 1281.701 kb on + strand, within Pf1N1B4_1141at 1281.701 kb on + strand, within Pf1N1B4_1141at 1281.701 kb on + strand, within Pf1N1B4_1141at 1281.701 kb on + strand, within Pf1N1B4_1141at 1281.701 kb on + strand, within Pf1N1B4_1141at 1281.701 kb on + strand, within Pf1N1B4_1141at 1281.701 kb on + strand, within Pf1N1B4_1141at 1281.702 kb on - strand, within Pf1N1B4_1141at 1281.702 kb on - strand, within Pf1N1B4_1141at 1281.702 kb on - strand, within Pf1N1B4_1141at 1281.702 kb on - strand, within Pf1N1B4_1141at 1281.702 kb on - strand, within Pf1N1B4_1141at 1281.702 kb on - strand, within Pf1N1B4_1141at 1281.702 kb on - strand, within Pf1N1B4_1141at 1281.702 kb on - strand, within Pf1N1B4_1141at 1281.702 kb on - strand, within Pf1N1B4_1141at 1281.702 kb on - strand, within Pf1N1B4_1141at 1281.702 kb on - strand, within Pf1N1B4_1141at 1281.797 kb on + strand, within Pf1N1B4_1141at 1281.797 kb on + strand, within Pf1N1B4_1141at 1281.798 kb on - strand, within Pf1N1B4_1141at 1281.798 kb on - strand, within Pf1N1B4_1141at 1281.842 kb on + strandat 1281.842 kb on + strandat 1281.842 kb on + strandat 1281.843 kb on - strandat 1281.843 kb on - strandat 1281.843 kb on - strandat 1281.894 kb on - strandat 1281.980 kb on + strandat 1281.980 kb on + strandat 1281.980 kb on + strandat 1281.981 kb on - strandat 1281.981 kb on - strandat 1282.104 kb on + strandat 1282.150 kb on - strandat 1282.325 kb on + strandat 1282.325 kb on + strandat 1282.325 kb on + strandat 1282.840 kb on - strand, within Pf1N1B4_1142at 1282.898 kb on + strand, within Pf1N1B4_1142at 1282.962 kb on + strand, within Pf1N1B4_1142at 1283.134 kb on - strand, within Pf1N1B4_1142at 1283.163 kb on + strand, within Pf1N1B4_1142at 1283.164 kb on - strand, within Pf1N1B4_1142at 1283.164 kb on - strand, within Pf1N1B4_1142at 1283.174 kb on + strand, within Pf1N1B4_1142at 1283.175 kb on + strand, within Pf1N1B4_1142at 1283.212 kb on - strand, within Pf1N1B4_1142at 1283.212 kb on - strand, within Pf1N1B4_1142at 1283.212 kb on - strand, within Pf1N1B4_1142at 1283.336 kb on + strand, within Pf1N1B4_1142at 1283.337 kb on - strand, within Pf1N1B4_1142at 1283.340 kb on + strand, within Pf1N1B4_1142at 1283.340 kb on + strand, within Pf1N1B4_1142at 1283.340 kb on + strand, within Pf1N1B4_1142at 1283.341 kb on - strand, within Pf1N1B4_1142at 1283.341 kb on - strand, within Pf1N1B4_1142at 1283.341 kb on - strand, within Pf1N1B4_1142at 1283.362 kb on - strand, within Pf1N1B4_1142at 1283.385 kb on - strand, within Pf1N1B4_1142at 1283.768 kb on + strand, within Pf1N1B4_1142at 1283.768 kb on + strand, within Pf1N1B4_1142at 1283.768 kb on + strandat 1283.769 kb on - strand, within Pf1N1B4_1142at 1283.769 kb on - strand, within Pf1N1B4_1142at 1283.769 kb on - strand, within Pf1N1B4_1142at 1283.769 kb on - strand, within Pf1N1B4_1142at 1283.773 kb on - strand, within Pf1N1B4_1142at 1283.773 kb on - strand, within Pf1N1B4_1142at 1283.773 kb on - strand, within Pf1N1B4_1142at 1283.773 kb on - strand, within Pf1N1B4_1142at 1283.983 kb on - strand, within Pf1N1B4_1142at 1284.045 kb on + strand, within Pf1N1B4_1142at 1284.045 kb on + strand, within Pf1N1B4_1142at 1284.045 kb on + strand, within Pf1N1B4_1142at 1284.045 kb on + strand, within Pf1N1B4_1142at 1284.313 kb on - strand, within Pf1N1B4_1142at 1284.313 kb on - strand, within Pf1N1B4_1142at 1284.313 kb on - strand, within Pf1N1B4_1142at 1284.616 kb on - strand, within Pf1N1B4_1142at 1284.616 kb on - strand, within Pf1N1B4_1142at 1284.708 kb on + strandat 1284.708 kb on + strandat 1284.708 kb on + strandat 1284.708 kb on + strandat 1284.708 kb on + strandat 1284.708 kb on + strandat 1284.708 kb on + strandat 1284.708 kb on + strandat 1284.709 kb on - strandat 1284.709 kb on - strandat 1284.709 kb on - strandat 1284.777 kb on + strandat 1284.778 kb on - strandat 1284.814 kb on + strandat 1284.814 kb on + strandat 1284.815 kb on - strandat 1284.910 kb on + strandat 1284.910 kb on + strandat 1284.911 kb on - strandat 1284.945 kb on + strandat 1284.945 kb on + strandat 1284.946 kb on - strandat 1285.398 kb on + strand, within Pf1N1B4_1143at 1285.398 kb on + strand, within Pf1N1B4_1143at 1285.399 kb on - strand, within Pf1N1B4_1143at 1285.399 kb on - strand, within Pf1N1B4_1143at 1285.444 kb on + strand, within Pf1N1B4_1143at 1285.712 kb on + strand, within Pf1N1B4_1143at 1285.713 kb on - strand, within Pf1N1B4_1143at 1285.772 kb on + strand, within Pf1N1B4_1143at 1285.815 kb on + strand, within Pf1N1B4_1143at 1285.829 kb on + strand, within Pf1N1B4_1143

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Per-strain Table

Position Strand Gene LocusTag Fraction benzoic 0.58 mg/ml
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1,281,386 + Pf1N1B4_1141 0.70 -0.6
1,281,396 - Pf1N1B4_1141 0.70 +1.5
1,281,494 + Pf1N1B4_1141 0.75 +0.6
1,281,494 + Pf1N1B4_1141 0.75 +0.6
1,281,495 - Pf1N1B4_1141 0.75 -0.0
1,281,612 + Pf1N1B4_1141 0.80 +0.3
1,281,612 + Pf1N1B4_1141 0.80 +2.2
1,281,612 + Pf1N1B4_1141 0.80 +2.0
1,281,613 - Pf1N1B4_1141 0.80 +0.5
1,281,613 - Pf1N1B4_1141 0.80 -0.1
1,281,613 - Pf1N1B4_1141 0.80 -1.4
1,281,613 - Pf1N1B4_1141 0.80 +0.6
1,281,654 - Pf1N1B4_1141 0.82 +0.2
1,281,654 - Pf1N1B4_1141 0.82 -0.4
1,281,654 - Pf1N1B4_1141 0.82 +0.1
1,281,654 - Pf1N1B4_1141 0.82 -0.6
1,281,701 + Pf1N1B4_1141 0.84 +0.2
1,281,701 + Pf1N1B4_1141 0.84 +0.2
1,281,701 + Pf1N1B4_1141 0.84 -0.8
1,281,701 + Pf1N1B4_1141 0.84 +0.9
1,281,701 + Pf1N1B4_1141 0.84 -0.1
1,281,701 + Pf1N1B4_1141 0.84 +0.8
1,281,701 + Pf1N1B4_1141 0.84 -2.2
1,281,701 + Pf1N1B4_1141 0.84 -0.0
1,281,701 + Pf1N1B4_1141 0.84 +1.2
1,281,701 + Pf1N1B4_1141 0.84 -0.8
1,281,701 + Pf1N1B4_1141 0.84 +0.2
1,281,701 + Pf1N1B4_1141 0.84 -1.0
1,281,701 + Pf1N1B4_1141 0.84 -0.7
1,281,701 + Pf1N1B4_1141 0.84 -0.6
1,281,701 + Pf1N1B4_1141 0.84 -0.8
1,281,701 + Pf1N1B4_1141 0.84 -1.1
1,281,702 - Pf1N1B4_1141 0.84 +1.2
1,281,702 - Pf1N1B4_1141 0.84 +1.9
1,281,702 - Pf1N1B4_1141 0.84 -0.4
1,281,702 - Pf1N1B4_1141 0.84 -0.7
1,281,702 - Pf1N1B4_1141 0.84 -1.2
1,281,702 - Pf1N1B4_1141 0.84 -1.0
1,281,702 - Pf1N1B4_1141 0.84 +0.8
1,281,702 - Pf1N1B4_1141 0.84 -0.4
1,281,702 - Pf1N1B4_1141 0.84 +1.7
1,281,702 - Pf1N1B4_1141 0.84 +1.3
1,281,702 - Pf1N1B4_1141 0.84 -0.8
1,281,797 + Pf1N1B4_1141 0.88 +1.8
1,281,797 + Pf1N1B4_1141 0.88 +0.2
1,281,798 - Pf1N1B4_1141 0.88 -0.1
1,281,798 - Pf1N1B4_1141 0.88 -1.3
1,281,842 + +0.2
1,281,842 + +0.2
1,281,842 + +0.8
1,281,843 - +0.2
1,281,843 - +0.8
1,281,843 - -0.0
1,281,894 - +0.4
1,281,980 + -0.1
1,281,980 + -0.5
1,281,980 + -0.3
1,281,981 - -0.7
1,281,981 - +0.2
1,282,104 + -0.4
1,282,150 - -0.8
1,282,325 + +1.6
1,282,325 + +0.7
1,282,325 + -0.4
1,282,840 - Pf1N1B4_1142 0.19 -0.1
1,282,898 + Pf1N1B4_1142 0.21 -0.4
1,282,962 + Pf1N1B4_1142 0.23 -1.6
1,283,134 - Pf1N1B4_1142 0.30 +1.6
1,283,163 + Pf1N1B4_1142 0.31 -1.4
1,283,164 - Pf1N1B4_1142 0.31 -0.8
1,283,164 - Pf1N1B4_1142 0.31 -2.1
1,283,174 + Pf1N1B4_1142 0.32 -1.1
1,283,175 + Pf1N1B4_1142 0.32 -0.1
1,283,212 - Pf1N1B4_1142 0.33 +0.7
1,283,212 - Pf1N1B4_1142 0.33 -0.6
1,283,212 - Pf1N1B4_1142 0.33 -0.0
1,283,336 + Pf1N1B4_1142 0.38 -1.8
1,283,337 - Pf1N1B4_1142 0.38 -0.4
1,283,340 + Pf1N1B4_1142 0.38 -0.2
1,283,340 + Pf1N1B4_1142 0.38 -1.1
1,283,340 + Pf1N1B4_1142 0.38 -0.6
1,283,341 - Pf1N1B4_1142 0.38 -2.0
1,283,341 - Pf1N1B4_1142 0.38 +0.1
1,283,341 - Pf1N1B4_1142 0.38 -1.1
1,283,362 - Pf1N1B4_1142 0.39 -1.4
1,283,385 - Pf1N1B4_1142 0.40 -1.2
1,283,768 + Pf1N1B4_1142 0.55 +0.2
1,283,768 + Pf1N1B4_1142 0.55 +0.2
1,283,768 + -0.4
1,283,769 - Pf1N1B4_1142 0.55 -0.1
1,283,769 - Pf1N1B4_1142 0.55 +0.4
1,283,769 - Pf1N1B4_1142 0.55 -2.0
1,283,769 - Pf1N1B4_1142 0.55 -2.2
1,283,773 - Pf1N1B4_1142 0.55 -0.7
1,283,773 - Pf1N1B4_1142 0.55 -1.0
1,283,773 - Pf1N1B4_1142 0.55 +0.2
1,283,773 - Pf1N1B4_1142 0.55 +0.9
1,283,983 - Pf1N1B4_1142 0.64 -0.8
1,284,045 + Pf1N1B4_1142 0.66 +0.7
1,284,045 + Pf1N1B4_1142 0.66 -1.6
1,284,045 + Pf1N1B4_1142 0.66 +0.2
1,284,045 + Pf1N1B4_1142 0.66 -2.0
1,284,313 - Pf1N1B4_1142 0.77 -0.4
1,284,313 - Pf1N1B4_1142 0.77 -1.2
1,284,313 - Pf1N1B4_1142 0.77 -0.7
1,284,616 - Pf1N1B4_1142 0.89 -0.4
1,284,616 - Pf1N1B4_1142 0.89 +1.2
1,284,708 + -0.4
1,284,708 + +0.4
1,284,708 + -0.4
1,284,708 + +0.4
1,284,708 + +1.2
1,284,708 + +0.4
1,284,708 + -0.4
1,284,708 + -1.1
1,284,709 - -1.6
1,284,709 - +0.4
1,284,709 - -0.4
1,284,777 + -0.7
1,284,778 - -3.1
1,284,814 + +1.4
1,284,814 + -1.4
1,284,815 - +1.6
1,284,910 + -1.6
1,284,910 + +1.4
1,284,911 - +0.4
1,284,945 + +0.7
1,284,945 + -0.5
1,284,946 - +0.2
1,285,398 + Pf1N1B4_1143 0.21 -1.6
1,285,398 + Pf1N1B4_1143 0.21 -1.4
1,285,399 - Pf1N1B4_1143 0.21 +0.4
1,285,399 - Pf1N1B4_1143 0.21 -0.1
1,285,444 + Pf1N1B4_1143 0.24 +1.2
1,285,712 + Pf1N1B4_1143 0.42 +1.7
1,285,713 - Pf1N1B4_1143 0.42 +0.7
1,285,772 + Pf1N1B4_1143 0.45 -1.0
1,285,815 + Pf1N1B4_1143 0.48 -0.2
1,285,829 + Pf1N1B4_1143 0.49 -0.6

Or see this region's nucleotide sequence