Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03887

Experiment: PYE with Spectinomycin 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00598 and CCNA_03887 are separated by 230 nucleotidesCCNA_03887 and CCNA_00600 overlap by 13 nucleotides CCNA_00598: CCNA_00598 - TonB-dependent receptor, at 631,886 to 634,816 _00598 CCNA_03887: CCNA_03887 - hypothetical protein, at 635,047 to 635,673 _03887 CCNA_00600: CCNA_00600 - hypothetical protein, at 635,661 to 636,890 _00600 Position (kb) 635 636Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 634.061 kb on - strand, within CCNA_00598at 634.066 kb on - strand, within CCNA_00598at 634.107 kb on - strand, within CCNA_00598at 634.140 kb on + strand, within CCNA_00598at 634.140 kb on + strand, within CCNA_00598at 634.145 kb on + strand, within CCNA_00598at 634.148 kb on - strand, within CCNA_00598at 634.168 kb on + strand, within CCNA_00598at 634.189 kb on + strand, within CCNA_00598at 634.208 kb on + strand, within CCNA_00598at 634.226 kb on + strand, within CCNA_00598at 634.226 kb on + strand, within CCNA_00598at 634.226 kb on + strand, within CCNA_00598at 634.234 kb on + strand, within CCNA_00598at 634.234 kb on - strand, within CCNA_00598at 634.270 kb on - strand, within CCNA_00598at 634.298 kb on - strand, within CCNA_00598at 634.353 kb on + strand, within CCNA_00598at 634.360 kb on + strand, within CCNA_00598at 634.360 kb on + strand, within CCNA_00598at 634.361 kb on - strand, within CCNA_00598at 634.367 kb on - strand, within CCNA_00598at 634.370 kb on + strand, within CCNA_00598at 634.381 kb on + strand, within CCNA_00598at 634.418 kb on + strand, within CCNA_00598at 634.418 kb on + strand, within CCNA_00598at 634.426 kb on - strand, within CCNA_00598at 634.426 kb on - strand, within CCNA_00598at 634.426 kb on - strand, within CCNA_00598at 634.434 kb on + strand, within CCNA_00598at 634.434 kb on + strand, within CCNA_00598at 634.434 kb on + strand, within CCNA_00598at 634.442 kb on - strand, within CCNA_00598at 634.477 kb on + strand, within CCNA_00598at 634.483 kb on + strand, within CCNA_00598at 634.490 kb on + strand, within CCNA_00598at 634.541 kb on + strandat 634.577 kb on + strandat 634.577 kb on + strandat 634.585 kb on - strandat 634.594 kb on + strandat 634.635 kb on - strandat 634.661 kb on - strandat 634.666 kb on + strandat 634.676 kb on + strandat 634.711 kb on - strandat 634.755 kb on - strandat 634.837 kb on + strandat 634.901 kb on + strandat 634.906 kb on + strandat 634.906 kb on + strandat 634.906 kb on + strandat 634.906 kb on + strandat 634.906 kb on + strandat 634.906 kb on + strandat 634.906 kb on + strandat 634.906 kb on + strandat 634.914 kb on - strandat 634.914 kb on - strandat 634.921 kb on + strandat 634.965 kb on - strandat 634.968 kb on + strandat 634.969 kb on + strandat 634.982 kb on - strandat 635.004 kb on - strandat 635.015 kb on - strandat 635.034 kb on + strandat 635.129 kb on + strand, within CCNA_03887at 635.137 kb on - strand, within CCNA_03887at 635.156 kb on - strand, within CCNA_03887at 635.169 kb on + strand, within CCNA_03887at 635.174 kb on + strand, within CCNA_03887at 635.177 kb on - strand, within CCNA_03887at 635.185 kb on + strand, within CCNA_03887at 635.185 kb on + strand, within CCNA_03887at 635.185 kb on + strand, within CCNA_03887at 635.193 kb on - strand, within CCNA_03887at 635.193 kb on - strand, within CCNA_03887at 635.193 kb on - strand, within CCNA_03887at 635.195 kb on - strandat 635.196 kb on + strand, within CCNA_03887at 635.208 kb on + strand, within CCNA_03887at 635.208 kb on + strand, within CCNA_03887at 635.208 kb on + strand, within CCNA_03887at 635.216 kb on - strand, within CCNA_03887at 635.216 kb on - strand, within CCNA_03887at 635.216 kb on - strand, within CCNA_03887at 635.216 kb on - strand, within CCNA_03887at 635.239 kb on - strand, within CCNA_03887at 635.259 kb on + strand, within CCNA_03887at 635.316 kb on + strand, within CCNA_03887at 635.316 kb on + strand, within CCNA_03887at 635.322 kb on + strand, within CCNA_03887at 635.373 kb on + strand, within CCNA_03887at 635.454 kb on + strand, within CCNA_03887at 635.456 kb on + strand, within CCNA_03887at 635.462 kb on - strand, within CCNA_03887at 635.462 kb on - strand, within CCNA_03887at 635.464 kb on + strand, within CCNA_03887at 635.469 kb on + strand, within CCNA_03887at 635.469 kb on + strand, within CCNA_03887at 635.469 kb on + strand, within CCNA_03887at 635.469 kb on + strand, within CCNA_03887at 635.469 kb on + strand, within CCNA_03887at 635.469 kb on + strand, within CCNA_03887at 635.469 kb on + strand, within CCNA_03887at 635.469 kb on + strand, within CCNA_03887at 635.469 kb on + strand, within CCNA_03887at 635.469 kb on + strand, within CCNA_03887at 635.469 kb on + strand, within CCNA_03887at 635.469 kb on + strand, within CCNA_03887at 635.469 kb on + strand, within CCNA_03887at 635.477 kb on - strand, within CCNA_03887at 635.477 kb on - strand, within CCNA_03887at 635.477 kb on - strand, within CCNA_03887at 635.477 kb on - strand, within CCNA_03887at 635.479 kb on + strandat 635.484 kb on - strand, within CCNA_03887at 635.487 kb on + strand, within CCNA_03887at 635.487 kb on + strand, within CCNA_03887at 635.487 kb on + strand, within CCNA_03887at 635.487 kb on + strand, within CCNA_03887at 635.487 kb on + strand, within CCNA_03887at 635.487 kb on + strand, within CCNA_03887at 635.487 kb on + strand, within CCNA_03887at 635.487 kb on + strand, within CCNA_03887at 635.487 kb on + strand, within CCNA_03887at 635.487 kb on + strand, within CCNA_03887at 635.487 kb on + strand, within CCNA_03887at 635.487 kb on + strand, within CCNA_03887at 635.487 kb on + strand, within CCNA_03887at 635.487 kb on + strand, within CCNA_03887at 635.487 kb on + strand, within CCNA_03887at 635.487 kb on + strand, within CCNA_03887at 635.487 kb on + strand, within CCNA_03887at 635.495 kb on - strand, within CCNA_03887at 635.495 kb on - strand, within CCNA_03887at 635.495 kb on - strand, within CCNA_03887at 635.495 kb on - strand, within CCNA_03887at 635.495 kb on - strandat 635.495 kb on - strand, within CCNA_03887at 635.495 kb on - strand, within CCNA_03887at 635.495 kb on - strand, within CCNA_03887at 635.497 kb on - strand, within CCNA_03887at 635.502 kb on + strand, within CCNA_03887at 635.522 kb on - strand, within CCNA_03887at 635.526 kb on + strand, within CCNA_03887at 635.526 kb on + strand, within CCNA_03887at 635.526 kb on + strand, within CCNA_03887at 635.641 kb on + strandat 635.642 kb on + strandat 635.643 kb on - strandat 635.649 kb on - strandat 635.650 kb on - strandat 635.652 kb on + strandat 635.660 kb on - strandat 635.661 kb on - strandat 635.667 kb on - strandat 635.737 kb on - strandat 635.746 kb on - strandat 635.752 kb on + strandat 635.763 kb on + strandat 635.771 kb on - strandat 635.786 kb on + strand, within CCNA_00600at 635.825 kb on - strand, within CCNA_00600at 635.842 kb on - strand, within CCNA_00600at 635.866 kb on + strand, within CCNA_00600at 635.866 kb on + strand, within CCNA_00600at 635.866 kb on + strand, within CCNA_00600at 635.885 kb on + strand, within CCNA_00600at 635.885 kb on + strand, within CCNA_00600at 635.890 kb on + strand, within CCNA_00600at 635.893 kb on - strand, within CCNA_00600at 635.938 kb on + strand, within CCNA_00600at 635.943 kb on + strand, within CCNA_00600at 635.943 kb on + strand, within CCNA_00600at 635.951 kb on - strand, within CCNA_00600at 635.982 kb on - strand, within CCNA_00600at 636.008 kb on + strand, within CCNA_00600at 636.039 kb on + strand, within CCNA_00600at 636.045 kb on + strand, within CCNA_00600at 636.059 kb on - strand, within CCNA_00600at 636.065 kb on + strand, within CCNA_00600at 636.065 kb on - strand, within CCNA_00600at 636.082 kb on - strand, within CCNA_00600at 636.085 kb on + strand, within CCNA_00600at 636.108 kb on - strand, within CCNA_00600at 636.108 kb on - strand, within CCNA_00600at 636.110 kb on + strand, within CCNA_00600at 636.110 kb on + strand, within CCNA_00600at 636.118 kb on - strand, within CCNA_00600at 636.125 kb on - strand, within CCNA_00600at 636.125 kb on - strand, within CCNA_00600at 636.125 kb on - strand, within CCNA_00600at 636.146 kb on + strand, within CCNA_00600at 636.154 kb on - strand, within CCNA_00600at 636.154 kb on - strand, within CCNA_00600at 636.155 kb on + strand, within CCNA_00600at 636.169 kb on - strand, within CCNA_00600at 636.172 kb on - strand, within CCNA_00600at 636.183 kb on - strand, within CCNA_00600at 636.192 kb on + strand, within CCNA_00600at 636.197 kb on + strand, within CCNA_00600at 636.198 kb on - strand, within CCNA_00600at 636.200 kb on - strand, within CCNA_00600at 636.220 kb on + strand, within CCNA_00600at 636.220 kb on + strand, within CCNA_00600at 636.220 kb on + strand, within CCNA_00600at 636.228 kb on - strand, within CCNA_00600at 636.228 kb on - strand, within CCNA_00600at 636.233 kb on + strand, within CCNA_00600at 636.241 kb on - strand, within CCNA_00600at 636.246 kb on + strand, within CCNA_00600at 636.263 kb on - strandat 636.279 kb on + strand, within CCNA_00600at 636.281 kb on - strand, within CCNA_00600at 636.287 kb on - strand, within CCNA_00600at 636.289 kb on + strand, within CCNA_00600at 636.294 kb on + strand, within CCNA_00600at 636.294 kb on + strand, within CCNA_00600at 636.301 kb on + strand, within CCNA_00600at 636.301 kb on + strand, within CCNA_00600at 636.307 kb on - strand, within CCNA_00600at 636.350 kb on + strand, within CCNA_00600at 636.378 kb on - strand, within CCNA_00600at 636.384 kb on + strand, within CCNA_00600at 636.387 kb on - strand, within CCNA_00600at 636.389 kb on + strand, within CCNA_00600at 636.389 kb on + strand, within CCNA_00600at 636.397 kb on - strand, within CCNA_00600at 636.426 kb on + strand, within CCNA_00600at 636.437 kb on - strand, within CCNA_00600at 636.437 kb on - strand, within CCNA_00600at 636.490 kb on + strand, within CCNA_00600at 636.495 kb on + strand, within CCNA_00600at 636.503 kb on - strand, within CCNA_00600at 636.503 kb on - strand, within CCNA_00600at 636.567 kb on - strand, within CCNA_00600at 636.582 kb on - strand, within CCNA_00600at 636.587 kb on + strand, within CCNA_00600at 636.592 kb on + strand, within CCNA_00600at 636.595 kb on - strand, within CCNA_00600at 636.602 kb on + strand, within CCNA_00600at 636.605 kb on + strand, within CCNA_00600at 636.659 kb on + strand, within CCNA_00600

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Spectinomycin 0.025 mg/ml
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634,061 - CCNA_00598 0.74 -2.1
634,066 - CCNA_00598 0.74 -1.2
634,107 - CCNA_00598 0.76 -1.6
634,140 + CCNA_00598 0.77 +0.5
634,140 + CCNA_00598 0.77 +0.3
634,145 + CCNA_00598 0.77 -0.5
634,148 - CCNA_00598 0.77 +0.0
634,168 + CCNA_00598 0.78 -0.9
634,189 + CCNA_00598 0.79 -0.3
634,208 + CCNA_00598 0.79 -0.9
634,226 + CCNA_00598 0.80 +0.0
634,226 + CCNA_00598 0.80 -0.7
634,226 + CCNA_00598 0.80 +0.2
634,234 + CCNA_00598 0.80 -1.7
634,234 - CCNA_00598 0.80 -0.2
634,270 - CCNA_00598 0.81 +0.4
634,298 - CCNA_00598 0.82 +0.1
634,353 + CCNA_00598 0.84 -0.5
634,360 + CCNA_00598 0.84 +0.8
634,360 + CCNA_00598 0.84 +0.1
634,361 - CCNA_00598 0.84 -2.2
634,367 - CCNA_00598 0.85 -0.1
634,370 + CCNA_00598 0.85 -0.1
634,381 + CCNA_00598 0.85 -1.7
634,418 + CCNA_00598 0.86 +0.2
634,418 + CCNA_00598 0.86 -0.4
634,426 - CCNA_00598 0.87 +1.0
634,426 - CCNA_00598 0.87 +0.6
634,426 - CCNA_00598 0.87 -0.6
634,434 + CCNA_00598 0.87 +0.4
634,434 + CCNA_00598 0.87 -0.6
634,434 + CCNA_00598 0.87 -1.2
634,442 - CCNA_00598 0.87 +0.1
634,477 + CCNA_00598 0.88 -1.6
634,483 + CCNA_00598 0.89 +0.5
634,490 + CCNA_00598 0.89 +0.4
634,541 + -1.5
634,577 + -1.6
634,577 + -1.3
634,585 - -0.7
634,594 + -0.6
634,635 - +0.9
634,661 - -2.1
634,666 + +1.9
634,676 + -2.4
634,711 - +0.8
634,755 - -0.4
634,837 + +0.7
634,901 + -0.7
634,906 + +0.7
634,906 + -1.0
634,906 + +0.2
634,906 + +0.1
634,906 + -1.9
634,906 + +1.6
634,906 + -0.6
634,906 + +1.5
634,914 - -0.7
634,914 - -1.1
634,921 + -0.1
634,965 - +0.8
634,968 + +0.9
634,969 + -0.0
634,982 - +0.6
635,004 - +0.6
635,015 - +0.2
635,034 + +0.3
635,129 + CCNA_03887 0.13 -0.5
635,137 - CCNA_03887 0.14 -1.2
635,156 - CCNA_03887 0.17 -1.3
635,169 + CCNA_03887 0.19 +1.1
635,174 + CCNA_03887 0.20 -0.2
635,177 - CCNA_03887 0.21 -1.5
635,185 + CCNA_03887 0.22 +0.2
635,185 + CCNA_03887 0.22 -0.6
635,185 + CCNA_03887 0.22 +0.4
635,193 - CCNA_03887 0.23 +0.4
635,193 - CCNA_03887 0.23 -1.7
635,193 - CCNA_03887 0.23 -0.9
635,195 - +1.4
635,196 + CCNA_03887 0.24 -2.0
635,208 + CCNA_03887 0.26 -0.1
635,208 + CCNA_03887 0.26 +0.4
635,208 + CCNA_03887 0.26 -0.7
635,216 - CCNA_03887 0.27 +0.1
635,216 - CCNA_03887 0.27 -1.5
635,216 - CCNA_03887 0.27 +0.8
635,216 - CCNA_03887 0.27 -0.8
635,239 - CCNA_03887 0.31 -0.6
635,259 + CCNA_03887 0.34 +0.8
635,316 + CCNA_03887 0.43 -0.3
635,316 + CCNA_03887 0.43 +0.5
635,322 + CCNA_03887 0.44 -0.7
635,373 + CCNA_03887 0.52 +0.1
635,454 + CCNA_03887 0.65 -0.5
635,456 + CCNA_03887 0.65 +0.3
635,462 - CCNA_03887 0.66 -1.7
635,462 - CCNA_03887 0.66 -1.1
635,464 + CCNA_03887 0.67 -0.2
635,469 + CCNA_03887 0.67 -1.6
635,469 + CCNA_03887 0.67 +0.6
635,469 + CCNA_03887 0.67 +0.1
635,469 + CCNA_03887 0.67 +1.0
635,469 + CCNA_03887 0.67 -0.2
635,469 + CCNA_03887 0.67 -0.3
635,469 + CCNA_03887 0.67 +0.7
635,469 + CCNA_03887 0.67 +2.4
635,469 + CCNA_03887 0.67 -0.4
635,469 + CCNA_03887 0.67 +0.9
635,469 + CCNA_03887 0.67 +0.7
635,469 + CCNA_03887 0.67 +1.6
635,469 + CCNA_03887 0.67 +0.5
635,477 - CCNA_03887 0.69 -0.2
635,477 - CCNA_03887 0.69 -0.9
635,477 - CCNA_03887 0.69 -0.6
635,477 - CCNA_03887 0.69 -0.4
635,479 + +1.8
635,484 - CCNA_03887 0.70 -0.3
635,487 + CCNA_03887 0.70 -0.3
635,487 + CCNA_03887 0.70 -0.4
635,487 + CCNA_03887 0.70 +1.8
635,487 + CCNA_03887 0.70 -1.3
635,487 + CCNA_03887 0.70 +0.8
635,487 + CCNA_03887 0.70 -0.5
635,487 + CCNA_03887 0.70 +0.2
635,487 + CCNA_03887 0.70 +0.5
635,487 + CCNA_03887 0.70 +0.2
635,487 + CCNA_03887 0.70 -0.9
635,487 + CCNA_03887 0.70 +0.1
635,487 + CCNA_03887 0.70 +0.2
635,487 + CCNA_03887 0.70 -0.5
635,487 + CCNA_03887 0.70 -0.3
635,487 + CCNA_03887 0.70 +0.3
635,487 + CCNA_03887 0.70 -0.6
635,487 + CCNA_03887 0.70 +0.2
635,495 - CCNA_03887 0.71 +1.8
635,495 - CCNA_03887 0.71 -0.1
635,495 - CCNA_03887 0.71 -0.7
635,495 - CCNA_03887 0.71 -1.8
635,495 - +1.1
635,495 - CCNA_03887 0.71 +0.8
635,495 - CCNA_03887 0.71 -0.8
635,495 - CCNA_03887 0.71 -1.7
635,497 - CCNA_03887 0.72 -2.8
635,502 + CCNA_03887 0.73 +0.8
635,522 - CCNA_03887 0.76 +0.1
635,526 + CCNA_03887 0.76 -0.1
635,526 + CCNA_03887 0.76 +0.6
635,526 + CCNA_03887 0.76 -0.9
635,641 + +0.2
635,642 + -1.0
635,643 - +1.3
635,649 - +0.6
635,650 - -0.4
635,652 + -0.2
635,660 - +2.1
635,661 - +0.6
635,667 - +1.2
635,737 - -0.5
635,746 - -0.2
635,752 + +0.2
635,763 + +0.2
635,771 - -0.9
635,786 + CCNA_00600 0.10 +0.1
635,825 - CCNA_00600 0.13 -0.8
635,842 - CCNA_00600 0.15 +0.9
635,866 + CCNA_00600 0.17 +0.4
635,866 + CCNA_00600 0.17 -2.3
635,866 + CCNA_00600 0.17 -0.8
635,885 + CCNA_00600 0.18 +0.6
635,885 + CCNA_00600 0.18 +1.2
635,890 + CCNA_00600 0.19 +0.8
635,893 - CCNA_00600 0.19 +1.4
635,938 + CCNA_00600 0.23 +0.0
635,943 + CCNA_00600 0.23 +0.4
635,943 + CCNA_00600 0.23 -0.4
635,951 - CCNA_00600 0.24 -0.6
635,982 - CCNA_00600 0.26 -0.8
636,008 + CCNA_00600 0.28 +0.1
636,039 + CCNA_00600 0.31 -0.3
636,045 + CCNA_00600 0.31 -1.3
636,059 - CCNA_00600 0.32 -0.3
636,065 + CCNA_00600 0.33 -0.2
636,065 - CCNA_00600 0.33 -1.0
636,082 - CCNA_00600 0.34 -0.2
636,085 + CCNA_00600 0.34 +0.1
636,108 - CCNA_00600 0.36 +1.5
636,108 - CCNA_00600 0.36 +1.1
636,110 + CCNA_00600 0.37 -0.1
636,110 + CCNA_00600 0.37 -0.6
636,118 - CCNA_00600 0.37 +0.4
636,125 - CCNA_00600 0.38 -0.2
636,125 - CCNA_00600 0.38 -2.0
636,125 - CCNA_00600 0.38 +0.6
636,146 + CCNA_00600 0.39 -1.2
636,154 - CCNA_00600 0.40 +1.1
636,154 - CCNA_00600 0.40 +0.0
636,155 + CCNA_00600 0.40 -0.5
636,169 - CCNA_00600 0.41 -0.8
636,172 - CCNA_00600 0.42 -0.3
636,183 - CCNA_00600 0.42 -0.6
636,192 + CCNA_00600 0.43 -0.1
636,197 + CCNA_00600 0.44 +0.3
636,198 - CCNA_00600 0.44 +0.8
636,200 - CCNA_00600 0.44 +0.4
636,220 + CCNA_00600 0.45 +1.2
636,220 + CCNA_00600 0.45 -1.2
636,220 + CCNA_00600 0.45 -0.9
636,228 - CCNA_00600 0.46 +0.3
636,228 - CCNA_00600 0.46 +0.7
636,233 + CCNA_00600 0.47 -1.2
636,241 - CCNA_00600 0.47 +0.9
636,246 + CCNA_00600 0.48 +1.1
636,263 - +1.4
636,279 + CCNA_00600 0.50 -0.7
636,281 - CCNA_00600 0.50 -1.7
636,287 - CCNA_00600 0.51 +1.1
636,289 + CCNA_00600 0.51 +2.8
636,294 + CCNA_00600 0.51 +0.1
636,294 + CCNA_00600 0.51 -0.7
636,301 + CCNA_00600 0.52 +0.8
636,301 + CCNA_00600 0.52 +0.3
636,307 - CCNA_00600 0.53 -0.7
636,350 + CCNA_00600 0.56 +1.4
636,378 - CCNA_00600 0.58 -1.4
636,384 + CCNA_00600 0.59 -0.2
636,387 - CCNA_00600 0.59 -2.0
636,389 + CCNA_00600 0.59 +0.4
636,389 + CCNA_00600 0.59 -0.3
636,397 - CCNA_00600 0.60 -1.4
636,426 + CCNA_00600 0.62 +0.5
636,437 - CCNA_00600 0.63 -0.8
636,437 - CCNA_00600 0.63 -0.4
636,490 + CCNA_00600 0.67 -0.1
636,495 + CCNA_00600 0.68 +0.6
636,503 - CCNA_00600 0.68 -0.9
636,503 - CCNA_00600 0.68 -0.6
636,567 - CCNA_00600 0.74 -0.4
636,582 - CCNA_00600 0.75 -1.5
636,587 + CCNA_00600 0.75 -2.2
636,592 + CCNA_00600 0.76 -0.4
636,595 - CCNA_00600 0.76 -1.1
636,602 + CCNA_00600 0.77 -0.8
636,605 + CCNA_00600 0.77 +0.1
636,659 + CCNA_00600 0.81 -0.2

Or see this region's nucleotide sequence