Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00505

Experiment: PYE with Spectinomycin 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00503 and CCNA_00504 overlap by 4 nucleotidesCCNA_00504 and CCNA_00505 are separated by 204 nucleotidesCCNA_00505 and CCNA_00506 are separated by 5 nucleotides CCNA_00503: CCNA_00503 - hypothetical protein, at 519,310 to 519,732 _00503 CCNA_00504: CCNA_00504 - 23S rRNA methyltransferase, at 519,729 to 520,193 _00504 CCNA_00505: CCNA_00505 - ubiquinol-cytochrome c reductase iron-sulfur subunit, at 520,398 to 520,949 _00505 CCNA_00506: CCNA_00506 - cytochrome b, at 520,955 to 522,235 _00506 Position (kb) 520 521Strain fitness (log2 ratio) -2 -1 0 1 2 3at 519.414 kb on - strand, within CCNA_00503at 519.435 kb on + strand, within CCNA_00503at 519.435 kb on + strand, within CCNA_00503at 519.443 kb on - strand, within CCNA_00503at 519.448 kb on + strand, within CCNA_00503at 519.463 kb on - strand, within CCNA_00503at 519.467 kb on + strand, within CCNA_00503at 519.475 kb on - strand, within CCNA_00503at 519.480 kb on + strand, within CCNA_00503at 519.499 kb on + strand, within CCNA_00503at 519.582 kb on - strand, within CCNA_00503at 519.584 kb on + strand, within CCNA_00503at 519.592 kb on - strand, within CCNA_00503at 519.592 kb on - strand, within CCNA_00503at 519.599 kb on + strand, within CCNA_00503at 519.649 kb on - strand, within CCNA_00503at 519.655 kb on - strand, within CCNA_00503at 519.677 kb on + strand, within CCNA_00503at 519.685 kb on - strand, within CCNA_00503at 519.767 kb on - strandat 519.772 kb on - strandat 519.774 kb on - strandat 519.815 kb on + strand, within CCNA_00504at 519.815 kb on + strand, within CCNA_00504at 519.836 kb on + strand, within CCNA_00504at 519.856 kb on + strand, within CCNA_00504at 519.864 kb on - strand, within CCNA_00504at 519.910 kb on - strand, within CCNA_00504at 519.910 kb on - strand, within CCNA_00504at 519.960 kb on + strand, within CCNA_00504at 519.991 kb on + strand, within CCNA_00504at 519.991 kb on + strand, within CCNA_00504at 519.992 kb on - strand, within CCNA_00504at 520.047 kb on + strand, within CCNA_00504at 520.047 kb on + strand, within CCNA_00504at 520.055 kb on - strand, within CCNA_00504at 520.055 kb on - strandat 520.062 kb on + strand, within CCNA_00504at 520.062 kb on + strand, within CCNA_00504at 520.070 kb on - strand, within CCNA_00504at 520.090 kb on - strand, within CCNA_00504at 520.106 kb on + strand, within CCNA_00504at 520.106 kb on + strand, within CCNA_00504at 520.106 kb on + strand, within CCNA_00504at 520.106 kb on + strand, within CCNA_00504at 520.106 kb on + strand, within CCNA_00504at 520.106 kb on + strand, within CCNA_00504at 520.106 kb on + strand, within CCNA_00504at 520.106 kb on + strand, within CCNA_00504at 520.106 kb on + strand, within CCNA_00504at 520.107 kb on + strand, within CCNA_00504at 520.114 kb on - strand, within CCNA_00504at 520.114 kb on - strand, within CCNA_00504at 520.114 kb on - strand, within CCNA_00504at 520.114 kb on - strand, within CCNA_00504at 520.114 kb on - strand, within CCNA_00504at 520.114 kb on - strand, within CCNA_00504at 520.114 kb on - strand, within CCNA_00504at 520.115 kb on - strand, within CCNA_00504at 520.115 kb on - strand, within CCNA_00504at 520.115 kb on - strand, within CCNA_00504at 520.115 kb on - strand, within CCNA_00504at 520.115 kb on - strand, within CCNA_00504at 520.115 kb on - strand, within CCNA_00504at 520.136 kb on + strand, within CCNA_00504at 520.136 kb on + strand, within CCNA_00504at 520.163 kb on - strandat 520.171 kb on + strandat 520.253 kb on + strandat 520.253 kb on - strandat 520.307 kb on - strandat 520.333 kb on - strandat 520.334 kb on - strandat 520.355 kb on - strandat 520.355 kb on - strandat 520.394 kb on - strandat 520.449 kb on - strandat 520.509 kb on + strand, within CCNA_00505at 520.535 kb on + strand, within CCNA_00505at 520.543 kb on - strand, within CCNA_00505at 520.559 kb on + strand, within CCNA_00505at 520.615 kb on + strand, within CCNA_00505at 520.615 kb on + strand, within CCNA_00505at 520.661 kb on + strand, within CCNA_00505at 520.746 kb on + strand, within CCNA_00505at 520.754 kb on - strand, within CCNA_00505at 520.779 kb on + strand, within CCNA_00505at 520.779 kb on + strand, within CCNA_00505at 520.779 kb on + strand, within CCNA_00505at 520.781 kb on + strand, within CCNA_00505at 520.787 kb on - strand, within CCNA_00505at 520.787 kb on - strand, within CCNA_00505at 520.944 kb on + strandat 520.949 kb on + strandat 520.978 kb on + strandat 521.063 kb on - strandat 521.118 kb on + strand, within CCNA_00506at 521.182 kb on + strand, within CCNA_00506at 521.299 kb on + strand, within CCNA_00506at 521.299 kb on + strand, within CCNA_00506at 521.311 kb on + strand, within CCNA_00506at 521.393 kb on + strand, within CCNA_00506at 521.398 kb on + strand, within CCNA_00506at 521.424 kb on + strand, within CCNA_00506at 521.429 kb on + strand, within CCNA_00506at 521.481 kb on + strand, within CCNA_00506at 521.509 kb on + strand, within CCNA_00506at 521.587 kb on + strand, within CCNA_00506at 521.587 kb on + strand, within CCNA_00506at 521.609 kb on + strand, within CCNA_00506at 521.609 kb on + strand, within CCNA_00506at 521.609 kb on + strand, within CCNA_00506at 521.654 kb on + strand, within CCNA_00506at 521.725 kb on - strand, within CCNA_00506at 521.799 kb on - strand, within CCNA_00506at 521.931 kb on + strand, within CCNA_00506

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Spectinomycin 0.025 mg/ml
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519,414 - CCNA_00503 0.25 -1.1
519,435 + CCNA_00503 0.30 +1.1
519,435 + CCNA_00503 0.30 +0.1
519,443 - CCNA_00503 0.31 -0.2
519,448 + CCNA_00503 0.33 -0.0
519,463 - CCNA_00503 0.36 +0.8
519,467 + CCNA_00503 0.37 +0.2
519,475 - CCNA_00503 0.39 -1.5
519,480 + CCNA_00503 0.40 +0.2
519,499 + CCNA_00503 0.45 -1.5
519,582 - CCNA_00503 0.64 +2.2
519,584 + CCNA_00503 0.65 +1.5
519,592 - CCNA_00503 0.67 +0.5
519,592 - CCNA_00503 0.67 +0.2
519,599 + CCNA_00503 0.68 +0.6
519,649 - CCNA_00503 0.80 -0.3
519,655 - CCNA_00503 0.82 -0.0
519,677 + CCNA_00503 0.87 +0.5
519,685 - CCNA_00503 0.89 +1.3
519,767 - +1.6
519,772 - -0.4
519,774 - -0.5
519,815 + CCNA_00504 0.18 -0.7
519,815 + CCNA_00504 0.18 +0.1
519,836 + CCNA_00504 0.23 -0.4
519,856 + CCNA_00504 0.27 -0.2
519,864 - CCNA_00504 0.29 +0.0
519,910 - CCNA_00504 0.39 +1.2
519,910 - CCNA_00504 0.39 +0.2
519,960 + CCNA_00504 0.50 -0.8
519,991 + CCNA_00504 0.56 +0.2
519,991 + CCNA_00504 0.56 -0.7
519,992 - CCNA_00504 0.57 -0.5
520,047 + CCNA_00504 0.68 +0.8
520,047 + CCNA_00504 0.68 -0.1
520,055 - CCNA_00504 0.70 +0.9
520,055 - +1.8
520,062 + CCNA_00504 0.72 -0.5
520,062 + CCNA_00504 0.72 -1.6
520,070 - CCNA_00504 0.73 -0.2
520,090 - CCNA_00504 0.78 +1.0
520,106 + CCNA_00504 0.81 -1.2
520,106 + CCNA_00504 0.81 -0.2
520,106 + CCNA_00504 0.81 -0.8
520,106 + CCNA_00504 0.81 -2.1
520,106 + CCNA_00504 0.81 +0.2
520,106 + CCNA_00504 0.81 -1.0
520,106 + CCNA_00504 0.81 -1.0
520,106 + CCNA_00504 0.81 -1.8
520,106 + CCNA_00504 0.81 -0.7
520,107 + CCNA_00504 0.81 +0.5
520,114 - CCNA_00504 0.83 +0.5
520,114 - CCNA_00504 0.83 +0.2
520,114 - CCNA_00504 0.83 -0.6
520,114 - CCNA_00504 0.83 -0.8
520,114 - CCNA_00504 0.83 -1.1
520,114 - CCNA_00504 0.83 -0.5
520,114 - CCNA_00504 0.83 +1.8
520,115 - CCNA_00504 0.83 +0.4
520,115 - CCNA_00504 0.83 -1.5
520,115 - CCNA_00504 0.83 +0.8
520,115 - CCNA_00504 0.83 -0.4
520,115 - CCNA_00504 0.83 -0.9
520,115 - CCNA_00504 0.83 -0.9
520,136 + CCNA_00504 0.88 -0.9
520,136 + CCNA_00504 0.88 -0.5
520,163 - +1.1
520,171 + +0.9
520,253 + +1.7
520,253 - +0.2
520,307 - +0.9
520,333 - +0.8
520,334 - +1.3
520,355 - +0.7
520,355 - -0.2
520,394 - -1.5
520,449 - -0.4
520,509 + CCNA_00505 0.20 +1.8
520,535 + CCNA_00505 0.25 +2.0
520,543 - CCNA_00505 0.26 -2.0
520,559 + CCNA_00505 0.29 +2.0
520,615 + CCNA_00505 0.39 +1.7
520,615 + CCNA_00505 0.39 +2.0
520,661 + CCNA_00505 0.48 +2.0
520,746 + CCNA_00505 0.63 +3.0
520,754 - CCNA_00505 0.64 +0.6
520,779 + CCNA_00505 0.69 +1.7
520,779 + CCNA_00505 0.69 +2.0
520,779 + CCNA_00505 0.69 +1.4
520,781 + CCNA_00505 0.69 +2.0
520,787 - CCNA_00505 0.70 -1.6
520,787 - CCNA_00505 0.70 +0.6
520,944 + +1.1
520,949 + +1.5
520,978 + +1.3
521,063 - -1.3
521,118 + CCNA_00506 0.13 +2.6
521,182 + CCNA_00506 0.18 +1.0
521,299 + CCNA_00506 0.27 +0.6
521,299 + CCNA_00506 0.27 +1.3
521,311 + CCNA_00506 0.28 +0.8
521,393 + CCNA_00506 0.34 +1.1
521,398 + CCNA_00506 0.35 +0.1
521,424 + CCNA_00506 0.37 -0.2
521,429 + CCNA_00506 0.37 +0.9
521,481 + CCNA_00506 0.41 -0.1
521,509 + CCNA_00506 0.43 +0.7
521,587 + CCNA_00506 0.49 +0.4
521,587 + CCNA_00506 0.49 -0.2
521,609 + CCNA_00506 0.51 +1.5
521,609 + CCNA_00506 0.51 +0.8
521,609 + CCNA_00506 0.51 +0.6
521,654 + CCNA_00506 0.55 -0.6
521,725 - CCNA_00506 0.60 -1.8
521,799 - CCNA_00506 0.66 -0.8
521,931 + CCNA_00506 0.76 +0.7

Or see this region's nucleotide sequence