Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00333

Experiment: PYE with Spectinomycin 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00331 and CCNA_00332 are separated by 2 nucleotidesCCNA_00332 and CCNA_00333 are separated by 20 nucleotidesCCNA_00333 and CCNA_00334 are separated by 62 nucleotidesCCNA_00334 and CCNA_00335 are separated by 37 nucleotides CCNA_00331: CCNA_00331 - molybdate-binding protein, at 342,674 to 343,432 _00331 CCNA_00332: CCNA_00332 - molybdenum transport system permease protein modB, at 343,435 to 344,109 _00332 CCNA_00333: CCNA_00333 - LytTr DNA-binding domain protein, at 344,130 to 344,957 _00333 CCNA_00334: CCNA_00334 - hypothetical protein, at 345,020 to 345,580 _00334 CCNA_00335: CCNA_00335 - putative secreted protein, at 345,618 to 346,055 _00335 Position (kb) 344 345Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 343.186 kb on + strand, within CCNA_00331at 343.187 kb on + strand, within CCNA_00331at 343.205 kb on + strand, within CCNA_00331at 343.205 kb on + strand, within CCNA_00331at 343.213 kb on - strand, within CCNA_00331at 343.213 kb on - strand, within CCNA_00331at 343.218 kb on + strand, within CCNA_00331at 343.223 kb on + strand, within CCNA_00331at 343.231 kb on - strand, within CCNA_00331at 343.236 kb on - strand, within CCNA_00331at 343.243 kb on + strand, within CCNA_00331at 343.243 kb on + strand, within CCNA_00331at 343.243 kb on + strand, within CCNA_00331at 343.243 kb on + strand, within CCNA_00331at 343.243 kb on + strand, within CCNA_00331at 343.243 kb on + strand, within CCNA_00331at 343.243 kb on + strand, within CCNA_00331at 343.243 kb on + strand, within CCNA_00331at 343.243 kb on + strand, within CCNA_00331at 343.243 kb on + strand, within CCNA_00331at 343.243 kb on + strand, within CCNA_00331at 343.243 kb on + strand, within CCNA_00331at 343.243 kb on + strand, within CCNA_00331at 343.243 kb on + strand, within CCNA_00331at 343.243 kb on + strand, within CCNA_00331at 343.251 kb on - strand, within CCNA_00331at 343.251 kb on - strand, within CCNA_00331at 343.251 kb on - strand, within CCNA_00331at 343.251 kb on - strand, within CCNA_00331at 343.267 kb on - strand, within CCNA_00331at 343.286 kb on - strand, within CCNA_00331at 343.304 kb on - strand, within CCNA_00331at 343.317 kb on + strand, within CCNA_00331at 343.327 kb on + strand, within CCNA_00331at 343.327 kb on + strand, within CCNA_00331at 343.327 kb on + strand, within CCNA_00331at 343.335 kb on - strand, within CCNA_00331at 343.335 kb on - strand, within CCNA_00331at 343.335 kb on - strand, within CCNA_00331at 343.335 kb on - strand, within CCNA_00331at 343.364 kb on + strandat 343.364 kb on + strandat 343.372 kb on - strandat 343.431 kb on + strandat 343.434 kb on - strandat 343.439 kb on - strandat 343.444 kb on + strandat 343.486 kb on - strandat 343.502 kb on - strandat 343.507 kb on + strand, within CCNA_00332at 343.512 kb on + strand, within CCNA_00332at 343.512 kb on + strand, within CCNA_00332at 343.520 kb on - strand, within CCNA_00332at 343.548 kb on - strand, within CCNA_00332at 343.570 kb on + strand, within CCNA_00332at 343.589 kb on - strand, within CCNA_00332at 343.602 kb on + strand, within CCNA_00332at 343.610 kb on - strand, within CCNA_00332at 343.627 kb on + strand, within CCNA_00332at 343.627 kb on + strand, within CCNA_00332at 343.635 kb on - strandat 343.635 kb on - strand, within CCNA_00332at 343.635 kb on - strand, within CCNA_00332at 343.649 kb on - strand, within CCNA_00332at 343.675 kb on + strand, within CCNA_00332at 343.675 kb on + strand, within CCNA_00332at 343.689 kb on - strand, within CCNA_00332at 343.716 kb on + strand, within CCNA_00332at 343.724 kb on - strand, within CCNA_00332at 343.741 kb on - strand, within CCNA_00332at 343.762 kb on - strand, within CCNA_00332at 343.808 kb on - strand, within CCNA_00332at 343.832 kb on - strand, within CCNA_00332at 343.876 kb on + strand, within CCNA_00332at 343.887 kb on + strand, within CCNA_00332at 343.905 kb on + strand, within CCNA_00332at 343.934 kb on - strand, within CCNA_00332at 343.937 kb on + strand, within CCNA_00332at 343.949 kb on + strand, within CCNA_00332at 343.956 kb on + strand, within CCNA_00332at 343.956 kb on + strand, within CCNA_00332at 343.987 kb on + strand, within CCNA_00332at 343.998 kb on + strand, within CCNA_00332at 344.032 kb on + strand, within CCNA_00332at 344.034 kb on - strand, within CCNA_00332at 344.074 kb on - strandat 344.148 kb on + strandat 344.163 kb on - strandat 344.172 kb on + strandat 344.189 kb on - strandat 344.202 kb on - strandat 344.210 kb on - strandat 344.250 kb on + strand, within CCNA_00333at 344.260 kb on + strand, within CCNA_00333at 344.301 kb on - strandat 344.344 kb on - strand, within CCNA_00333at 344.361 kb on - strand, within CCNA_00333at 344.363 kb on - strand, within CCNA_00333at 344.366 kb on + strand, within CCNA_00333at 344.373 kb on + strand, within CCNA_00333at 344.374 kb on - strand, within CCNA_00333at 344.394 kb on + strand, within CCNA_00333at 344.454 kb on + strand, within CCNA_00333at 344.472 kb on - strand, within CCNA_00333at 344.472 kb on - strand, within CCNA_00333at 344.497 kb on - strand, within CCNA_00333at 344.507 kb on - strand, within CCNA_00333at 344.539 kb on + strand, within CCNA_00333at 344.545 kb on - strand, within CCNA_00333at 344.599 kb on + strand, within CCNA_00333at 344.627 kb on - strand, within CCNA_00333at 344.627 kb on - strand, within CCNA_00333at 344.633 kb on - strand, within CCNA_00333at 344.650 kb on + strand, within CCNA_00333at 344.650 kb on + strand, within CCNA_00333at 344.656 kb on + strand, within CCNA_00333at 344.656 kb on + strand, within CCNA_00333at 344.658 kb on - strand, within CCNA_00333at 344.664 kb on - strand, within CCNA_00333at 344.664 kb on - strand, within CCNA_00333at 344.664 kb on - strand, within CCNA_00333at 344.674 kb on + strand, within CCNA_00333at 344.708 kb on - strand, within CCNA_00333at 344.738 kb on + strand, within CCNA_00333at 344.746 kb on + strand, within CCNA_00333at 344.746 kb on - strand, within CCNA_00333at 344.791 kb on + strand, within CCNA_00333at 344.838 kb on + strand, within CCNA_00333at 344.838 kb on + strand, within CCNA_00333at 344.838 kb on + strand, within CCNA_00333at 344.859 kb on + strand, within CCNA_00333at 344.859 kb on + strand, within CCNA_00333at 344.955 kb on - strandat 344.955 kb on - strandat 344.967 kb on - strandat 344.968 kb on - strandat 345.010 kb on - strandat 345.010 kb on - strandat 345.010 kb on - strandat 345.069 kb on - strandat 345.081 kb on - strand, within CCNA_00334at 345.081 kb on - strandat 345.186 kb on + strand, within CCNA_00334at 345.202 kb on + strand, within CCNA_00334at 345.223 kb on + strand, within CCNA_00334at 345.223 kb on + strand, within CCNA_00334at 345.231 kb on - strand, within CCNA_00334at 345.240 kb on + strand, within CCNA_00334at 345.240 kb on + strand, within CCNA_00334at 345.245 kb on + strand, within CCNA_00334at 345.253 kb on - strand, within CCNA_00334at 345.254 kb on + strand, within CCNA_00334at 345.260 kb on - strand, within CCNA_00334at 345.267 kb on + strand, within CCNA_00334at 345.280 kb on - strand, within CCNA_00334at 345.292 kb on + strand, within CCNA_00334at 345.299 kb on + strand, within CCNA_00334at 345.299 kb on + strand, within CCNA_00334at 345.299 kb on + strand, within CCNA_00334at 345.300 kb on - strand, within CCNA_00334at 345.302 kb on - strand, within CCNA_00334at 345.307 kb on - strand, within CCNA_00334at 345.312 kb on - strand, within CCNA_00334at 345.317 kb on + strand, within CCNA_00334at 345.334 kb on + strand, within CCNA_00334at 345.364 kb on + strand, within CCNA_00334at 345.370 kb on - strand, within CCNA_00334at 345.396 kb on + strand, within CCNA_00334at 345.416 kb on + strand, within CCNA_00334at 345.446 kb on + strand, within CCNA_00334at 345.454 kb on - strand, within CCNA_00334at 345.469 kb on + strand, within CCNA_00334at 345.477 kb on - strand, within CCNA_00334at 345.481 kb on + strand, within CCNA_00334at 345.487 kb on + strand, within CCNA_00334at 345.496 kb on - strand, within CCNA_00334at 345.496 kb on - strand, within CCNA_00334at 345.496 kb on - strand, within CCNA_00334at 345.496 kb on - strand, within CCNA_00334at 345.496 kb on - strand, within CCNA_00334at 345.517 kb on + strand, within CCNA_00334at 345.530 kb on + strandat 345.556 kb on + strandat 345.556 kb on + strandat 345.556 kb on + strandat 345.556 kb on + strandat 345.564 kb on - strandat 345.569 kb on + strandat 345.577 kb on - strandat 345.577 kb on - strandat 345.580 kb on + strandat 345.581 kb on + strandat 345.581 kb on + strandat 345.581 kb on + strandat 345.588 kb on - strandat 345.589 kb on - strandat 345.589 kb on - strandat 345.589 kb on - strandat 345.624 kb on - strandat 345.639 kb on + strandat 345.648 kb on - strandat 345.648 kb on - strandat 345.708 kb on + strand, within CCNA_00335at 345.715 kb on - strand, within CCNA_00335at 345.716 kb on - strand, within CCNA_00335at 345.718 kb on + strand, within CCNA_00335at 345.725 kb on + strand, within CCNA_00335at 345.725 kb on + strand, within CCNA_00335at 345.731 kb on + strand, within CCNA_00335at 345.733 kb on - strand, within CCNA_00335at 345.733 kb on - strand, within CCNA_00335at 345.733 kb on - strand, within CCNA_00335at 345.744 kb on - strand, within CCNA_00335at 345.759 kb on + strand, within CCNA_00335at 345.776 kb on + strand, within CCNA_00335at 345.778 kb on + strand, within CCNA_00335at 345.784 kb on - strand, within CCNA_00335at 345.784 kb on - strand, within CCNA_00335at 345.814 kb on - strand, within CCNA_00335at 345.820 kb on - strand, within CCNA_00335at 345.855 kb on - strand, within CCNA_00335at 345.866 kb on + strand, within CCNA_00335at 345.874 kb on - strand, within CCNA_00335at 345.876 kb on + strand, within CCNA_00335at 345.924 kb on + strand, within CCNA_00335at 345.924 kb on + strand, within CCNA_00335at 345.952 kb on - strand, within CCNA_00335at 345.952 kb on - strand, within CCNA_00335

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Spectinomycin 0.025 mg/ml
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343,186 + CCNA_00331 0.67 +0.6
343,187 + CCNA_00331 0.68 -2.1
343,205 + CCNA_00331 0.70 -0.4
343,205 + CCNA_00331 0.70 -0.3
343,213 - CCNA_00331 0.71 -2.0
343,213 - CCNA_00331 0.71 +0.1
343,218 + CCNA_00331 0.72 -0.2
343,223 + CCNA_00331 0.72 -0.4
343,231 - CCNA_00331 0.73 -2.4
343,236 - CCNA_00331 0.74 +1.3
343,243 + CCNA_00331 0.75 -0.6
343,243 + CCNA_00331 0.75 +0.1
343,243 + CCNA_00331 0.75 +0.5
343,243 + CCNA_00331 0.75 +0.8
343,243 + CCNA_00331 0.75 -0.3
343,243 + CCNA_00331 0.75 +0.2
343,243 + CCNA_00331 0.75 -0.2
343,243 + CCNA_00331 0.75 +0.7
343,243 + CCNA_00331 0.75 -0.2
343,243 + CCNA_00331 0.75 +0.1
343,243 + CCNA_00331 0.75 +0.6
343,243 + CCNA_00331 0.75 +0.0
343,243 + CCNA_00331 0.75 +0.7
343,243 + CCNA_00331 0.75 +0.1
343,243 + CCNA_00331 0.75 -0.3
343,251 - CCNA_00331 0.76 -0.0
343,251 - CCNA_00331 0.76 -2.2
343,251 - CCNA_00331 0.76 -1.5
343,251 - CCNA_00331 0.76 -3.1
343,267 - CCNA_00331 0.78 -1.4
343,286 - CCNA_00331 0.81 -2.7
343,304 - CCNA_00331 0.83 -0.4
343,317 + CCNA_00331 0.85 -1.3
343,327 + CCNA_00331 0.86 -0.3
343,327 + CCNA_00331 0.86 +0.1
343,327 + CCNA_00331 0.86 +0.7
343,335 - CCNA_00331 0.87 -1.3
343,335 - CCNA_00331 0.87 -0.8
343,335 - CCNA_00331 0.87 -1.3
343,335 - CCNA_00331 0.87 -1.7
343,364 + +0.7
343,364 + +0.3
343,372 - -1.1
343,431 + +0.3
343,434 - -0.8
343,439 - -1.6
343,444 + -0.0
343,486 - -2.0
343,502 - -0.1
343,507 + CCNA_00332 0.11 -1.0
343,512 + CCNA_00332 0.11 +1.0
343,512 + CCNA_00332 0.11 +0.3
343,520 - CCNA_00332 0.13 -1.0
343,548 - CCNA_00332 0.17 +0.1
343,570 + CCNA_00332 0.20 +0.0
343,589 - CCNA_00332 0.23 -0.4
343,602 + CCNA_00332 0.25 +0.1
343,610 - CCNA_00332 0.26 +0.1
343,627 + CCNA_00332 0.28 -0.0
343,627 + CCNA_00332 0.28 -0.4
343,635 - +1.9
343,635 - CCNA_00332 0.30 -2.0
343,635 - CCNA_00332 0.30 -1.3
343,649 - CCNA_00332 0.32 -0.1
343,675 + CCNA_00332 0.36 +0.2
343,675 + CCNA_00332 0.36 -0.0
343,689 - CCNA_00332 0.38 -0.2
343,716 + CCNA_00332 0.42 -0.4
343,724 - CCNA_00332 0.43 -2.0
343,741 - CCNA_00332 0.45 +1.3
343,762 - CCNA_00332 0.48 -0.8
343,808 - CCNA_00332 0.55 -1.8
343,832 - CCNA_00332 0.59 -1.0
343,876 + CCNA_00332 0.65 -1.0
343,887 + CCNA_00332 0.67 +0.2
343,905 + CCNA_00332 0.70 -0.0
343,934 - CCNA_00332 0.74 -0.9
343,937 + CCNA_00332 0.74 -0.8
343,949 + CCNA_00332 0.76 -0.4
343,956 + CCNA_00332 0.77 +0.3
343,956 + CCNA_00332 0.77 +1.1
343,987 + CCNA_00332 0.82 +0.0
343,998 + CCNA_00332 0.83 -0.7
344,032 + CCNA_00332 0.88 +0.2
344,034 - CCNA_00332 0.89 -2.7
344,074 - -1.1
344,148 + -0.4
344,163 - -1.8
344,172 + +0.5
344,189 - -0.2
344,202 - -0.3
344,210 - +0.1
344,250 + CCNA_00333 0.14 -1.6
344,260 + CCNA_00333 0.16 +0.2
344,301 - +1.1
344,344 - CCNA_00333 0.26 -1.7
344,361 - CCNA_00333 0.28 -2.5
344,363 - CCNA_00333 0.28 -2.7
344,366 + CCNA_00333 0.29 -1.9
344,373 + CCNA_00333 0.29 -2.2
344,374 - CCNA_00333 0.29 -0.1
344,394 + CCNA_00333 0.32 -0.6
344,454 + CCNA_00333 0.39 -1.1
344,472 - CCNA_00333 0.41 +0.8
344,472 - CCNA_00333 0.41 -0.9
344,497 - CCNA_00333 0.44 -0.1
344,507 - CCNA_00333 0.46 +0.4
344,539 + CCNA_00333 0.49 -2.0
344,545 - CCNA_00333 0.50 -0.2
344,599 + CCNA_00333 0.57 -0.1
344,627 - CCNA_00333 0.60 +0.6
344,627 - CCNA_00333 0.60 -0.4
344,633 - CCNA_00333 0.61 -1.1
344,650 + CCNA_00333 0.63 -0.3
344,650 + CCNA_00333 0.63 -1.2
344,656 + CCNA_00333 0.64 -3.0
344,656 + CCNA_00333 0.64 -0.6
344,658 - CCNA_00333 0.64 +0.1
344,664 - CCNA_00333 0.64 +0.1
344,664 - CCNA_00333 0.64 -0.4
344,664 - CCNA_00333 0.64 +0.3
344,674 + CCNA_00333 0.66 -1.6
344,708 - CCNA_00333 0.70 -0.2
344,738 + CCNA_00333 0.73 -2.0
344,746 + CCNA_00333 0.74 -1.1
344,746 - CCNA_00333 0.74 -0.8
344,791 + CCNA_00333 0.80 -0.6
344,838 + CCNA_00333 0.86 -0.6
344,838 + CCNA_00333 0.86 -0.5
344,838 + CCNA_00333 0.86 +0.2
344,859 + CCNA_00333 0.88 +0.2
344,859 + CCNA_00333 0.88 -0.7
344,955 - +0.5
344,955 - -1.5
344,967 - -0.8
344,968 - -0.0
345,010 - -0.8
345,010 - -0.3
345,010 - -0.6
345,069 - -1.0
345,081 - CCNA_00334 0.11 -1.5
345,081 - +1.3
345,186 + CCNA_00334 0.30 +2.3
345,202 + CCNA_00334 0.32 -0.3
345,223 + CCNA_00334 0.36 -1.1
345,223 + CCNA_00334 0.36 -0.0
345,231 - CCNA_00334 0.38 -2.0
345,240 + CCNA_00334 0.39 -1.9
345,240 + CCNA_00334 0.39 -0.6
345,245 + CCNA_00334 0.40 -1.4
345,253 - CCNA_00334 0.42 -2.1
345,254 + CCNA_00334 0.42 -0.1
345,260 - CCNA_00334 0.43 -0.4
345,267 + CCNA_00334 0.44 -0.9
345,280 - CCNA_00334 0.46 -0.9
345,292 + CCNA_00334 0.48 -1.3
345,299 + CCNA_00334 0.50 +0.3
345,299 + CCNA_00334 0.50 -0.1
345,299 + CCNA_00334 0.50 -0.1
345,300 - CCNA_00334 0.50 -2.7
345,302 - CCNA_00334 0.50 +0.3
345,307 - CCNA_00334 0.51 -1.0
345,312 - CCNA_00334 0.52 -2.1
345,317 + CCNA_00334 0.53 +0.1
345,334 + CCNA_00334 0.56 -1.4
345,364 + CCNA_00334 0.61 -1.5
345,370 - CCNA_00334 0.62 -0.9
345,396 + CCNA_00334 0.67 -1.2
345,416 + CCNA_00334 0.71 +0.0
345,446 + CCNA_00334 0.76 -1.8
345,454 - CCNA_00334 0.77 +0.7
345,469 + CCNA_00334 0.80 +0.2
345,477 - CCNA_00334 0.81 -1.7
345,481 + CCNA_00334 0.82 -1.3
345,487 + CCNA_00334 0.83 +0.3
345,496 - CCNA_00334 0.85 +0.9
345,496 - CCNA_00334 0.85 -1.3
345,496 - CCNA_00334 0.85 -0.6
345,496 - CCNA_00334 0.85 -0.8
345,496 - CCNA_00334 0.85 -0.6
345,517 + CCNA_00334 0.89 -0.3
345,530 + -1.9
345,556 + -0.3
345,556 + -0.4
345,556 + -2.1
345,556 + -1.6
345,564 - +0.6
345,569 + -1.2
345,577 - -1.2
345,577 - -0.7
345,580 + -0.2
345,581 + -0.2
345,581 + -2.3
345,581 + -0.5
345,588 - -0.9
345,589 - -0.9
345,589 - +0.6
345,589 - +0.2
345,624 - -0.5
345,639 + -1.1
345,648 - -1.8
345,648 - -1.8
345,708 + CCNA_00335 0.21 -1.7
345,715 - CCNA_00335 0.22 -1.8
345,716 - CCNA_00335 0.22 -0.8
345,718 + CCNA_00335 0.23 +0.0
345,725 + CCNA_00335 0.24 -0.4
345,725 + CCNA_00335 0.24 -0.3
345,731 + CCNA_00335 0.26 -1.5
345,733 - CCNA_00335 0.26 +0.3
345,733 - CCNA_00335 0.26 +0.6
345,733 - CCNA_00335 0.26 -0.1
345,744 - CCNA_00335 0.29 -2.3
345,759 + CCNA_00335 0.32 -2.9
345,776 + CCNA_00335 0.36 -1.0
345,778 + CCNA_00335 0.37 -0.9
345,784 - CCNA_00335 0.38 +0.2
345,784 - CCNA_00335 0.38 -0.7
345,814 - CCNA_00335 0.45 -2.1
345,820 - CCNA_00335 0.46 -0.6
345,855 - CCNA_00335 0.54 +0.3
345,866 + CCNA_00335 0.57 +0.1
345,874 - CCNA_00335 0.58 -1.3
345,876 + CCNA_00335 0.59 -0.8
345,924 + CCNA_00335 0.70 -1.0
345,924 + CCNA_00335 0.70 -2.1
345,952 - CCNA_00335 0.76 +1.7
345,952 - CCNA_00335 0.76 -0.5

Or see this region's nucleotide sequence