Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00235

Experiment: PYE with Spectinomycin 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00234 and CCNA_00235 overlap by 4 nucleotidesCCNA_00235 and CCNA_00236 are separated by 62 nucleotides CCNA_00234: CCNA_00234 - WecE-family cell wall biogenesis enzyme, at 249,116 to 250,276 _00234 CCNA_00235: CCNA_00235 - hypothetical protein, at 250,273 to 250,548 _00235 CCNA_00236: CCNA_00236 - hypothetical protein, at 250,611 to 252,308 _00236 Position (kb) 250 251Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 249.322 kb on + strand, within CCNA_00234at 249.322 kb on + strand, within CCNA_00234at 249.322 kb on + strand, within CCNA_00234at 249.322 kb on + strand, within CCNA_00234at 249.322 kb on + strand, within CCNA_00234at 249.322 kb on + strand, within CCNA_00234at 249.322 kb on + strand, within CCNA_00234at 249.322 kb on + strand, within CCNA_00234at 249.322 kb on + strand, within CCNA_00234at 249.324 kb on + strand, within CCNA_00234at 249.324 kb on + strand, within CCNA_00234at 249.324 kb on + strand, within CCNA_00234at 249.324 kb on + strand, within CCNA_00234at 249.329 kb on + strand, within CCNA_00234at 249.330 kb on - strand, within CCNA_00234at 249.330 kb on - strand, within CCNA_00234at 249.330 kb on - strand, within CCNA_00234at 249.330 kb on - strand, within CCNA_00234at 249.330 kb on - strand, within CCNA_00234at 249.330 kb on - strand, within CCNA_00234at 249.330 kb on - strand, within CCNA_00234at 249.330 kb on - strand, within CCNA_00234at 249.330 kb on - strand, within CCNA_00234at 249.330 kb on - strand, within CCNA_00234at 249.330 kb on - strand, within CCNA_00234at 249.332 kb on - strand, within CCNA_00234at 249.332 kb on - strand, within CCNA_00234at 249.332 kb on - strand, within CCNA_00234at 249.332 kb on - strand, within CCNA_00234at 249.332 kb on - strand, within CCNA_00234at 249.332 kb on - strand, within CCNA_00234at 249.348 kb on - strand, within CCNA_00234at 249.353 kb on - strand, within CCNA_00234at 249.355 kb on + strand, within CCNA_00234at 249.363 kb on + strand, within CCNA_00234at 249.392 kb on - strand, within CCNA_00234at 249.399 kb on - strand, within CCNA_00234at 249.425 kb on + strand, within CCNA_00234at 249.437 kb on + strand, within CCNA_00234at 249.460 kb on + strand, within CCNA_00234at 249.468 kb on - strand, within CCNA_00234at 249.493 kb on + strand, within CCNA_00234at 249.493 kb on + strand, within CCNA_00234at 249.501 kb on - strand, within CCNA_00234at 249.501 kb on - strand, within CCNA_00234at 249.501 kb on - strand, within CCNA_00234at 249.547 kb on - strand, within CCNA_00234at 249.554 kb on + strand, within CCNA_00234at 249.562 kb on - strand, within CCNA_00234at 249.578 kb on + strand, within CCNA_00234at 249.603 kb on + strand, within CCNA_00234at 249.611 kb on - strand, within CCNA_00234at 249.611 kb on - strand, within CCNA_00234at 249.614 kb on + strand, within CCNA_00234at 249.632 kb on + strand, within CCNA_00234at 249.705 kb on + strand, within CCNA_00234at 249.713 kb on - strand, within CCNA_00234at 249.738 kb on + strand, within CCNA_00234at 249.774 kb on + strand, within CCNA_00234at 249.827 kb on + strand, within CCNA_00234at 249.837 kb on - strand, within CCNA_00234at 249.840 kb on - strand, within CCNA_00234at 249.842 kb on - strand, within CCNA_00234at 249.854 kb on + strand, within CCNA_00234at 249.854 kb on + strand, within CCNA_00234at 249.857 kb on - strand, within CCNA_00234at 249.943 kb on + strand, within CCNA_00234at 249.973 kb on + strand, within CCNA_00234at 249.977 kb on - strand, within CCNA_00234at 249.984 kb on + strand, within CCNA_00234at 249.984 kb on + strand, within CCNA_00234at 250.017 kb on + strand, within CCNA_00234at 250.064 kb on + strand, within CCNA_00234at 250.064 kb on + strand, within CCNA_00234at 250.064 kb on + strand, within CCNA_00234at 250.072 kb on - strand, within CCNA_00234at 250.075 kb on + strand, within CCNA_00234at 250.075 kb on + strand, within CCNA_00234at 250.075 kb on + strand, within CCNA_00234at 250.134 kb on + strand, within CCNA_00234at 250.147 kb on - strand, within CCNA_00234at 250.152 kb on - strand, within CCNA_00234at 250.155 kb on - strand, within CCNA_00234at 250.160 kb on + strand, within CCNA_00234at 250.177 kb on + strandat 250.185 kb on - strandat 250.194 kb on + strandat 250.202 kb on - strandat 250.218 kb on - strandat 250.225 kb on - strandat 250.230 kb on - strandat 250.258 kb on + strandat 250.265 kb on + strandat 250.266 kb on - strandat 250.271 kb on + strandat 250.273 kb on - strandat 250.277 kb on + strandat 250.307 kb on - strand, within CCNA_00235at 250.315 kb on + strand, within CCNA_00235at 250.315 kb on + strand, within CCNA_00235at 250.323 kb on - strand, within CCNA_00235at 250.414 kb on - strand, within CCNA_00235at 250.423 kb on + strand, within CCNA_00235at 250.441 kb on - strand, within CCNA_00235at 250.477 kb on - strand, within CCNA_00235at 250.510 kb on - strand, within CCNA_00235at 250.559 kb on + strandat 250.561 kb on + strandat 250.567 kb on - strandat 250.569 kb on - strandat 250.569 kb on - strandat 250.573 kb on + strandat 250.573 kb on + strandat 250.574 kb on - strandat 250.574 kb on - strandat 250.581 kb on - strandat 250.608 kb on + strandat 250.633 kb on + strandat 250.633 kb on + strandat 250.638 kb on + strandat 250.638 kb on + strandat 250.716 kb on - strandat 250.730 kb on + strandat 250.750 kb on + strandat 250.764 kb on - strandat 250.765 kb on + strandat 250.770 kb on + strandat 250.778 kb on + strandat 250.778 kb on - strandat 250.821 kb on + strand, within CCNA_00236at 250.876 kb on - strand, within CCNA_00236at 250.899 kb on + strand, within CCNA_00236at 250.917 kb on - strand, within CCNA_00236at 250.923 kb on + strand, within CCNA_00236at 250.926 kb on + strand, within CCNA_00236at 250.934 kb on - strand, within CCNA_00236at 250.941 kb on + strand, within CCNA_00236at 250.965 kb on + strand, within CCNA_00236at 250.973 kb on - strand, within CCNA_00236at 251.007 kb on + strand, within CCNA_00236at 251.010 kb on - strand, within CCNA_00236at 251.010 kb on - strand, within CCNA_00236at 251.048 kb on - strand, within CCNA_00236at 251.048 kb on - strand, within CCNA_00236at 251.053 kb on + strand, within CCNA_00236at 251.053 kb on + strand, within CCNA_00236at 251.083 kb on + strand, within CCNA_00236at 251.125 kb on + strand, within CCNA_00236at 251.152 kb on + strand, within CCNA_00236at 251.152 kb on + strand, within CCNA_00236at 251.152 kb on + strand, within CCNA_00236at 251.160 kb on - strand, within CCNA_00236at 251.160 kb on - strand, within CCNA_00236at 251.184 kb on - strand, within CCNA_00236at 251.184 kb on - strand, within CCNA_00236at 251.222 kb on + strand, within CCNA_00236at 251.224 kb on + strand, within CCNA_00236at 251.224 kb on + strand, within CCNA_00236at 251.225 kb on - strand, within CCNA_00236at 251.225 kb on - strand, within CCNA_00236at 251.225 kb on - strand, within CCNA_00236at 251.230 kb on - strand, within CCNA_00236at 251.232 kb on - strand, within CCNA_00236at 251.265 kb on + strand, within CCNA_00236at 251.290 kb on + strand, within CCNA_00236at 251.290 kb on + strand, within CCNA_00236at 251.290 kb on + strand, within CCNA_00236at 251.295 kb on + strand, within CCNA_00236at 251.298 kb on - strand, within CCNA_00236at 251.298 kb on - strand, within CCNA_00236at 251.300 kb on - strand, within CCNA_00236at 251.323 kb on + strand, within CCNA_00236at 251.335 kb on + strand, within CCNA_00236at 251.337 kb on + strand, within CCNA_00236at 251.357 kb on + strand, within CCNA_00236at 251.372 kb on + strand, within CCNA_00236at 251.422 kb on + strand, within CCNA_00236at 251.422 kb on + strand, within CCNA_00236at 251.471 kb on - strand, within CCNA_00236at 251.534 kb on - strand, within CCNA_00236

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Spectinomycin 0.025 mg/ml
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249,322 + CCNA_00234 0.18 +1.1
249,322 + CCNA_00234 0.18 +1.2
249,322 + CCNA_00234 0.18 -0.3
249,322 + CCNA_00234 0.18 +0.6
249,322 + CCNA_00234 0.18 +0.3
249,322 + CCNA_00234 0.18 -0.4
249,322 + CCNA_00234 0.18 +0.2
249,322 + CCNA_00234 0.18 +0.2
249,322 + CCNA_00234 0.18 -0.0
249,324 + CCNA_00234 0.18 -0.3
249,324 + CCNA_00234 0.18 -0.0
249,324 + CCNA_00234 0.18 -1.0
249,324 + CCNA_00234 0.18 +1.2
249,329 + CCNA_00234 0.18 -0.1
249,330 - CCNA_00234 0.18 -0.0
249,330 - CCNA_00234 0.18 +0.0
249,330 - CCNA_00234 0.18 -1.2
249,330 - CCNA_00234 0.18 +0.2
249,330 - CCNA_00234 0.18 -1.2
249,330 - CCNA_00234 0.18 +0.4
249,330 - CCNA_00234 0.18 +0.6
249,330 - CCNA_00234 0.18 +0.5
249,330 - CCNA_00234 0.18 +0.6
249,330 - CCNA_00234 0.18 +0.5
249,330 - CCNA_00234 0.18 +0.5
249,332 - CCNA_00234 0.19 -0.8
249,332 - CCNA_00234 0.19 -1.4
249,332 - CCNA_00234 0.19 -0.2
249,332 - CCNA_00234 0.19 -1.4
249,332 - CCNA_00234 0.19 -0.3
249,332 - CCNA_00234 0.19 -1.4
249,348 - CCNA_00234 0.20 -0.1
249,353 - CCNA_00234 0.20 -0.1
249,355 + CCNA_00234 0.21 +1.2
249,363 + CCNA_00234 0.21 +0.3
249,392 - CCNA_00234 0.24 -1.8
249,399 - CCNA_00234 0.24 -0.4
249,425 + CCNA_00234 0.27 +0.6
249,437 + CCNA_00234 0.28 -0.0
249,460 + CCNA_00234 0.30 +0.5
249,468 - CCNA_00234 0.30 +0.1
249,493 + CCNA_00234 0.32 -0.9
249,493 + CCNA_00234 0.32 +0.3
249,501 - CCNA_00234 0.33 -0.8
249,501 - CCNA_00234 0.33 -2.0
249,501 - CCNA_00234 0.33 -1.5
249,547 - CCNA_00234 0.37 -1.0
249,554 + CCNA_00234 0.38 +0.2
249,562 - CCNA_00234 0.38 +0.9
249,578 + CCNA_00234 0.40 -0.2
249,603 + CCNA_00234 0.42 +0.4
249,611 - CCNA_00234 0.43 -0.7
249,611 - CCNA_00234 0.43 -1.5
249,614 + CCNA_00234 0.43 +2.6
249,632 + CCNA_00234 0.44 +0.0
249,705 + CCNA_00234 0.51 +0.2
249,713 - CCNA_00234 0.51 -1.1
249,738 + CCNA_00234 0.54 +0.1
249,774 + CCNA_00234 0.57 -0.8
249,827 + CCNA_00234 0.61 -0.4
249,837 - CCNA_00234 0.62 -0.6
249,840 - CCNA_00234 0.62 -1.7
249,842 - CCNA_00234 0.63 -1.2
249,854 + CCNA_00234 0.64 -0.3
249,854 + CCNA_00234 0.64 +0.1
249,857 - CCNA_00234 0.64 +0.4
249,943 + CCNA_00234 0.71 +0.6
249,973 + CCNA_00234 0.74 -0.1
249,977 - CCNA_00234 0.74 +1.0
249,984 + CCNA_00234 0.75 -0.3
249,984 + CCNA_00234 0.75 -1.0
250,017 + CCNA_00234 0.78 -0.4
250,064 + CCNA_00234 0.82 -1.4
250,064 + CCNA_00234 0.82 +1.0
250,064 + CCNA_00234 0.82 -0.3
250,072 - CCNA_00234 0.82 -1.6
250,075 + CCNA_00234 0.83 +0.7
250,075 + CCNA_00234 0.83 -0.1
250,075 + CCNA_00234 0.83 +0.2
250,134 + CCNA_00234 0.88 +0.5
250,147 - CCNA_00234 0.89 -0.5
250,152 - CCNA_00234 0.89 -0.9
250,155 - CCNA_00234 0.89 -1.2
250,160 + CCNA_00234 0.90 +0.3
250,177 + +0.4
250,185 - -1.1
250,194 + +0.8
250,202 - -0.5
250,218 - -0.7
250,225 - -2.6
250,230 - -0.8
250,258 + +0.3
250,265 + -0.0
250,266 - -1.3
250,271 + -0.3
250,273 - -0.6
250,277 + -1.4
250,307 - CCNA_00235 0.12 -0.7
250,315 + CCNA_00235 0.15 -0.5
250,315 + CCNA_00235 0.15 -1.2
250,323 - CCNA_00235 0.18 -0.7
250,414 - CCNA_00235 0.51 -1.9
250,423 + CCNA_00235 0.54 -0.8
250,441 - CCNA_00235 0.61 -0.1
250,477 - CCNA_00235 0.74 -1.8
250,510 - CCNA_00235 0.86 -2.8
250,559 + -1.9
250,561 + -0.3
250,567 - -0.6
250,569 - -0.3
250,569 - +1.3
250,573 + -3.8
250,573 + +1.1
250,574 - +0.5
250,574 - -0.6
250,581 - -0.3
250,608 + -0.4
250,633 + -1.7
250,633 + +1.4
250,638 + -1.0
250,638 + -0.9
250,716 - +0.7
250,730 + -1.0
250,750 + -1.3
250,764 - -1.5
250,765 + +0.3
250,770 + -0.4
250,778 + -1.0
250,778 - -1.6
250,821 + CCNA_00236 0.12 +0.2
250,876 - CCNA_00236 0.16 -1.4
250,899 + CCNA_00236 0.17 -0.4
250,917 - CCNA_00236 0.18 +0.2
250,923 + CCNA_00236 0.18 -1.5
250,926 + CCNA_00236 0.19 +0.1
250,934 - CCNA_00236 0.19 -0.0
250,941 + CCNA_00236 0.19 -1.4
250,965 + CCNA_00236 0.21 -1.2
250,973 - CCNA_00236 0.21 -0.2
251,007 + CCNA_00236 0.23 +0.7
251,010 - CCNA_00236 0.23 +0.2
251,010 - CCNA_00236 0.23 +0.6
251,048 - CCNA_00236 0.26 -0.4
251,048 - CCNA_00236 0.26 +1.8
251,053 + CCNA_00236 0.26 -0.0
251,053 + CCNA_00236 0.26 -0.9
251,083 + CCNA_00236 0.28 -0.1
251,125 + CCNA_00236 0.30 -0.0
251,152 + CCNA_00236 0.32 -1.6
251,152 + CCNA_00236 0.32 -1.7
251,152 + CCNA_00236 0.32 -0.7
251,160 - CCNA_00236 0.32 +0.8
251,160 - CCNA_00236 0.32 +0.1
251,184 - CCNA_00236 0.34 -0.7
251,184 - CCNA_00236 0.34 -1.0
251,222 + CCNA_00236 0.36 -1.2
251,224 + CCNA_00236 0.36 -0.6
251,224 + CCNA_00236 0.36 -2.7
251,225 - CCNA_00236 0.36 +0.2
251,225 - CCNA_00236 0.36 -0.4
251,225 - CCNA_00236 0.36 -0.4
251,230 - CCNA_00236 0.36 -1.9
251,232 - CCNA_00236 0.37 -1.1
251,265 + CCNA_00236 0.39 -0.1
251,290 + CCNA_00236 0.40 +0.3
251,290 + CCNA_00236 0.40 -0.9
251,290 + CCNA_00236 0.40 +0.4
251,295 + CCNA_00236 0.40 -0.5
251,298 - CCNA_00236 0.40 -0.8
251,298 - CCNA_00236 0.40 -1.2
251,300 - CCNA_00236 0.41 +1.0
251,323 + CCNA_00236 0.42 -1.9
251,335 + CCNA_00236 0.43 -0.7
251,337 + CCNA_00236 0.43 +0.8
251,357 + CCNA_00236 0.44 -1.4
251,372 + CCNA_00236 0.45 -1.4
251,422 + CCNA_00236 0.48 -0.0
251,422 + CCNA_00236 0.48 -0.5
251,471 - CCNA_00236 0.51 +0.1
251,534 - CCNA_00236 0.54 -0.0

Or see this region's nucleotide sequence