Experiment: L-aspartic (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS18540 and CA265_RS18545 are separated by 89 nucleotides CA265_RS18545 and CA265_RS18550 are separated by 1 nucleotides CA265_RS18550 and CA265_RS18555 overlap by 22 nucleotides
CA265_RS18540: CA265_RS18540 - N-succinylglutamylphosphate reductase (EC 1.2.1.38) <small>(from data)</small>, at 4,608,243 to 4,609,223
_RS18540
CA265_RS18545: CA265_RS18545 - argininosuccinate synthase, at 4,609,313 to 4,610,500
_RS18545
CA265_RS18550: CA265_RS18550 - N-acetyltransferase, at 4,610,502 to 4,611,200
_RS18550
CA265_RS18555: CA265_RS18555 - hypothetical protein, at 4,611,179 to 4,611,373
_RS18555
Position (kb) 4609
4610
4611 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 4608.470 kb on + strand, within CA265_RS18540 at 4608.505 kb on - strand, within CA265_RS18540 at 4608.671 kb on + strand, within CA265_RS18540 at 4608.734 kb on + strand, within CA265_RS18540 at 4608.804 kb on - strand, within CA265_RS18540 at 4608.957 kb on - strand, within CA265_RS18540 at 4609.028 kb on + strand, within CA265_RS18540 at 4609.082 kb on + strand, within CA265_RS18540 at 4609.083 kb on - strand, within CA265_RS18540 at 4609.086 kb on + strand, within CA265_RS18540 at 4609.099 kb on - strand, within CA265_RS18540 at 4609.293 kb on + strand at 4609.293 kb on + strand at 4609.293 kb on + strand at 4609.328 kb on + strand at 4609.362 kb on - strand at 4609.416 kb on + strand at 4609.430 kb on - strand at 4609.450 kb on + strand, within CA265_RS18545 at 4609.451 kb on - strand, within CA265_RS18545 at 4609.451 kb on - strand, within CA265_RS18545 at 4609.451 kb on - strand, within CA265_RS18545 at 4609.494 kb on - strand, within CA265_RS18545 at 4609.608 kb on - strand, within CA265_RS18545 at 4609.672 kb on + strand, within CA265_RS18545 at 4609.857 kb on - strand, within CA265_RS18545 at 4609.857 kb on - strand, within CA265_RS18545 at 4609.862 kb on + strand, within CA265_RS18545 at 4610.005 kb on - strand, within CA265_RS18545 at 4610.005 kb on - strand, within CA265_RS18545 at 4610.066 kb on - strand, within CA265_RS18545 at 4610.095 kb on + strand, within CA265_RS18545 at 4610.096 kb on - strand, within CA265_RS18545 at 4610.104 kb on + strand, within CA265_RS18545 at 4610.113 kb on + strand, within CA265_RS18545 at 4610.187 kb on + strand, within CA265_RS18545 at 4610.188 kb on - strand, within CA265_RS18545 at 4610.229 kb on - strand, within CA265_RS18545 at 4610.295 kb on + strand, within CA265_RS18545 at 4610.296 kb on - strand, within CA265_RS18545 at 4610.395 kb on + strand at 4610.420 kb on + strand at 4610.420 kb on + strand at 4610.443 kb on - strand at 4610.462 kb on - strand at 4610.520 kb on - strand at 4610.647 kb on - strand, within CA265_RS18550 at 4610.800 kb on + strand, within CA265_RS18550 at 4610.992 kb on - strand, within CA265_RS18550 at 4611.227 kb on - strand, within CA265_RS18555 at 4611.291 kb on - strand, within CA265_RS18555 at 4611.351 kb on - strand, within CA265_RS18555 at 4611.483 kb on - strand at 4611.490 kb on - strand at 4611.493 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-aspartic (N) remove 4,608,470 + CA265_RS18540 0.23 -1.4 4,608,505 - CA265_RS18540 0.27 -0.7 4,608,671 + CA265_RS18540 0.44 -1.6 4,608,734 + CA265_RS18540 0.50 -1.8 4,608,804 - CA265_RS18540 0.57 -0.7 4,608,957 - CA265_RS18540 0.73 +0.9 4,609,028 + CA265_RS18540 0.80 -1.4 4,609,082 + CA265_RS18540 0.86 -0.7 4,609,083 - CA265_RS18540 0.86 -2.6 4,609,086 + CA265_RS18540 0.86 -2.1 4,609,099 - CA265_RS18540 0.87 -2.5 4,609,293 + -2.1 4,609,293 + -0.4 4,609,293 + -2.4 4,609,328 + -2.1 4,609,362 - -4.0 4,609,416 + -0.9 4,609,430 - -2.1 4,609,450 + CA265_RS18545 0.12 -3.8 4,609,451 - CA265_RS18545 0.12 -1.4 4,609,451 - CA265_RS18545 0.12 -1.1 4,609,451 - CA265_RS18545 0.12 -3.2 4,609,494 - CA265_RS18545 0.15 -2.8 4,609,608 - CA265_RS18545 0.25 -2.8 4,609,672 + CA265_RS18545 0.30 -1.8 4,609,857 - CA265_RS18545 0.46 -2.2 4,609,857 - CA265_RS18545 0.46 +0.3 4,609,862 + CA265_RS18545 0.46 -1.7 4,610,005 - CA265_RS18545 0.58 -3.7 4,610,005 - CA265_RS18545 0.58 -3.1 4,610,066 - CA265_RS18545 0.63 -2.4 4,610,095 + CA265_RS18545 0.66 -3.5 4,610,096 - CA265_RS18545 0.66 +0.3 4,610,104 + CA265_RS18545 0.67 -2.3 4,610,113 + CA265_RS18545 0.67 -1.7 4,610,187 + CA265_RS18545 0.74 -2.4 4,610,188 - CA265_RS18545 0.74 -2.0 4,610,229 - CA265_RS18545 0.77 -2.1 4,610,295 + CA265_RS18545 0.83 -1.1 4,610,296 - CA265_RS18545 0.83 -3.3 4,610,395 + -3.8 4,610,420 + -2.6 4,610,420 + -2.8 4,610,443 - -2.0 4,610,462 - +1.9 4,610,520 - +0.7 4,610,647 - CA265_RS18550 0.21 -1.6 4,610,800 + CA265_RS18550 0.43 -2.6 4,610,992 - CA265_RS18550 0.70 -0.4 4,611,227 - CA265_RS18555 0.25 +0.1 4,611,291 - CA265_RS18555 0.57 -1.1 4,611,351 - CA265_RS18555 0.88 -0.7 4,611,483 - +0.7 4,611,490 - -1.7 4,611,493 - -1.5
Or see this region's nucleotide sequence