Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS04635

Experiment: L-aspartic (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-aspartic (N)
1,105,113	+		CA265_RS04625	0.76	-0.7
1,105,153	+		CA265_RS04625	0.79	+0.4
1,105,296	+		CA265_RS04625	0.90	+0.5
1,105,297	-		CA265_RS04625	0.90	+0.6
1,105,297	-		CA265_RS04625	0.90	-0.6
1,105,297	-		CA265_RS04625	0.90	-0.3
1,105,305	+				+0.7
1,105,327	-				+0.3
1,105,327	-				+0.9
1,105,331	+				-0.3
1,105,377	+				+0.7
1,105,386	-				-0.7
1,105,386	-				-0.8
1,105,545	+				+1.0
1,105,546	-				+0.4
1,105,557	+				+0.4
1,105,669	-		CA265_RS04630	0.28	+0.1
1,105,669	-		CA265_RS04630	0.28	+0.9
1,105,683	-		CA265_RS04630	0.32	+0.2
1,105,768	+		CA265_RS04630	0.53	-0.1
1,105,768	+		CA265_RS04630	0.53	-0.1
1,105,769	-		CA265_RS04630	0.53	-0.1
1,105,798	+		CA265_RS04630	0.61	-0.6
1,105,853	-		CA265_RS04630	0.74	+0.9
1,105,904	+		CA265_RS04630	0.87	+0.1
1,105,905	-		CA265_RS04630	0.87	+0.0
1,105,908	+		CA265_RS04630	0.88	-0.7
1,105,909	-		CA265_RS04630	0.88	-0.7
1,105,941	-				+0.4
1,105,969	+				+1.1
1,105,974	+				-1.1
1,106,024	+				+0.4
1,106,024	+				-0.1
1,106,025	-				-0.1
1,106,025	-				-0.2
1,106,093	+				+1.1
1,106,110	+				+0.5
1,106,111	-				+0.5
1,106,111	-				+0.1
1,106,115	-				+0.3
1,106,115	-				-0.2
1,106,174	-				+0.1
1,106,194	+				+1.5
1,106,195	-				-0.2
1,106,198	+				+0.6
1,106,215	+				+0.9
1,106,258	+				+0.9
1,106,336	-				+1.5
1,106,433	-		CA265_RS04635	0.11	+1.4
1,106,435	-		CA265_RS04635	0.11	-1.4
1,106,489	+		CA265_RS04635	0.13	+0.8
1,106,489	+		CA265_RS04635	0.13	+1.6
1,106,531	+		CA265_RS04635	0.14	+0.3
1,106,532	-		CA265_RS04635	0.14	+0.5
1,106,728	+		CA265_RS04635	0.21	+0.3
1,106,792	-		CA265_RS04635	0.23	+1.6
1,106,863	+		CA265_RS04635	0.25	+1.7
1,106,864	-		CA265_RS04635	0.25	+1.5
1,106,868	-		CA265_RS04635	0.25	+0.8
1,107,018	+		CA265_RS04635	0.30	+1.8
1,107,021	-		CA265_RS04635	0.30	+1.2
1,107,046	+		CA265_RS04635	0.31	+1.0
1,107,052	-		CA265_RS04635	0.31	+1.4
1,107,083	-		CA265_RS04635	0.32	+0.8
1,107,087	-		CA265_RS04635	0.32	+0.5
1,107,087	-		CA265_RS04635	0.32	-1.7
1,107,087	-		CA265_RS04635	0.32	+1.0
1,107,125	+		CA265_RS04635	0.33	+0.7
1,107,150	+		CA265_RS04635	0.34	+1.2
1,107,151	-		CA265_RS04635	0.34	+0.7
1,107,179	+		CA265_RS04635	0.35	+1.3
1,107,194	+		CA265_RS04635	0.35	+1.8
1,107,215	+		CA265_RS04635	0.36	+1.7
1,107,215	+		CA265_RS04635	0.36	+0.7
1,107,215	+		CA265_RS04635	0.36	+1.5
1,107,216	-		CA265_RS04635	0.36	-0.5
1,107,216	-		CA265_RS04635	0.36	-1.8
1,107,304	+		CA265_RS04635	0.39	+1.5
1,107,341	-		CA265_RS04635	0.40	-1.1
1,107,363	+		CA265_RS04635	0.41	-0.7
1,107,422	+		CA265_RS04635	0.43	+1.8
1,107,437	+		CA265_RS04635	0.43	+1.9
1,107,505	+		CA265_RS04635	0.45	+1.5
1,107,505	+		CA265_RS04635	0.45	+1.0
1,107,516	+		CA265_RS04635	0.46	+1.3
1,107,517	-		CA265_RS04635	0.46	-1.0
1,107,533	+		CA265_RS04635	0.46	+2.7
1,107,642	+		CA265_RS04635	0.50	+1.2
1,107,716	+		CA265_RS04635	0.52	+1.6
1,107,716	+		CA265_RS04635	0.52	+1.1
1,107,717	-		CA265_RS04635	0.52	+0.1
1,107,734	+		CA265_RS04635	0.53	+1.1
1,107,767	+		CA265_RS04635	0.54	+0.9
1,107,808	+		CA265_RS04635	0.55	+0.8
1,107,851	-		CA265_RS04635	0.56	+1.2
1,107,998	+		CA265_RS04635	0.61	+1.2
1,108,013	+		CA265_RS04635	0.62	+1.5
1,108,016	-		CA265_RS04635	0.62	+0.1
1,108,114	+		CA265_RS04635	0.65	+1.5
1,108,117	+		CA265_RS04635	0.65	+1.1
1,108,118	-		CA265_RS04635	0.65	+1.5
1,108,119	-		CA265_RS04635	0.65	+1.1
1,108,160	+		CA265_RS04635	0.66	+1.4
1,108,195	+		CA265_RS04635	0.67	+0.9
1,108,214	+		CA265_RS04635	0.68	+1.1
1,108,221	+		CA265_RS04635	0.68	+1.2
1,108,245	+		CA265_RS04635	0.69	+0.9
1,108,279	+		CA265_RS04635	0.70	+1.0
1,108,352	+		CA265_RS04635	0.72	+1.0
1,108,357	+		CA265_RS04635	0.73	+1.8
1,108,357	+		CA265_RS04635	0.73	+1.3
1,108,466	-		CA265_RS04635	0.76	+0.1
1,108,472	-		CA265_RS04635	0.76	+0.9
1,108,550	+		CA265_RS04635	0.79	+1.3
1,108,550	+		CA265_RS04635	0.79	+1.0
1,108,557	-		CA265_RS04635	0.79	+0.8
1,108,616	+		CA265_RS04635	0.81	+2.3
1,108,651	+		CA265_RS04635	0.82	+0.2
1,108,685	+		CA265_RS04635	0.83	+0.3
1,108,685	+		CA265_RS04635	0.83	+0.8
1,108,728	-		CA265_RS04635	0.84	+1.4
1,108,781	+		CA265_RS04635	0.86	+1.3
1,108,781	+		CA265_RS04635	0.86	+0.9
1,108,787	-		CA265_RS04635	0.86	+0.4
1,108,787	-		CA265_RS04635	0.86	+0.4
1,108,796	+		CA265_RS04635	0.87	+1.1
1,108,796	+		CA265_RS04635	0.87	+1.7
1,108,808	-		CA265_RS04635	0.87	+0.6
1,108,900	-		CA265_RS04635	0.90	+0.8
1,108,904	+				+1.8
1,108,904	+				+1.4
1,108,904	+				+1.0
1,109,013	-				+1.7
1,109,013	-				+0.6
1,109,068	+				+1.4
1,109,120	+				+0.9
1,109,190	-				+0.6
1,109,308	+				+0.8
1,109,308	+				+1.8
1,109,309	-				+0.7
1,109,309	-				+1.0
1,109,324	+				+1.6
1,109,325	-				+1.0
1,109,325	-				+0.9
1,109,396	-		CA265_RS04640	0.14	+1.1
1,109,441	-		CA265_RS04640	0.18	+1.0
1,109,493	+		CA265_RS04640	0.23	+0.9
1,109,575	+		CA265_RS04640	0.31	+1.1
1,109,626	+		CA265_RS04640	0.35	+1.9
1,109,661	+		CA265_RS04640	0.38	+1.9
1,109,673	-		CA265_RS04640	0.40	+1.5
1,109,802	+		CA265_RS04640	0.51	-1.7
1,109,807	+		CA265_RS04640	0.52	+2.1
1,109,807	+		CA265_RS04640	0.52	+2.3
1,109,921	+		CA265_RS04640	0.62	+2.1
1,109,968	-		CA265_RS04640	0.67	+1.0
1,109,968	-		CA265_RS04640	0.67	+1.7
1,110,103	+		CA265_RS04640	0.79	+1.7