Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS22070

Experiment: root sample 5; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS22065 and ABZR87_RS22070 overlap by 11 nucleotidesABZR87_RS22070 and ABZR87_RS22075 are separated by 35 nucleotides ABZR87_RS22065: ABZR87_RS22065 - flagellar protein export ATPase FliI, at 1,319,112 to 1,320,548 _RS22065 ABZR87_RS22070: ABZR87_RS22070 - flagellar assembly protein FliH, at 1,320,538 to 1,321,275 _RS22070 ABZR87_RS22075: ABZR87_RS22075 - flagellar motor switch protein FliG, at 1,321,311 to 1,322,303 _RS22075 Position (kb) 1320 1321 1322Strain fitness (log2 ratio) -1 0 1 2 3at 1319.599 kb on + strand, within ABZR87_RS22065at 1319.713 kb on + strand, within ABZR87_RS22065at 1319.713 kb on + strand, within ABZR87_RS22065at 1319.713 kb on + strand, within ABZR87_RS22065at 1319.713 kb on + strand, within ABZR87_RS22065at 1319.713 kb on + strand, within ABZR87_RS22065at 1319.714 kb on - strand, within ABZR87_RS22065at 1319.734 kb on + strand, within ABZR87_RS22065at 1319.735 kb on - strand, within ABZR87_RS22065at 1321.232 kb on + strandat 1321.318 kb on + strandat 1321.318 kb on + strandat 1321.318 kb on + strandat 1321.319 kb on - strandat 1321.319 kb on - strandat 1321.352 kb on - strandat 1321.870 kb on + strand, within ABZR87_RS22075at 1321.870 kb on + strand, within ABZR87_RS22075at 1322.083 kb on + strand, within ABZR87_RS22075at 1322.083 kb on + strand, within ABZR87_RS22075at 1322.084 kb on - strand, within ABZR87_RS22075at 1322.084 kb on - strand, within ABZR87_RS22075at 1322.084 kb on - strand, within ABZR87_RS22075at 1322.084 kb on - strand, within ABZR87_RS22075

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Per-strain Table

Position Strand Gene LocusTag Fraction root sample 5; outgrowth in LB
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1,319,599 + ABZR87_RS22065 0.34 +1.6
1,319,713 + ABZR87_RS22065 0.42 +1.8
1,319,713 + ABZR87_RS22065 0.42 +1.1
1,319,713 + ABZR87_RS22065 0.42 +2.7
1,319,713 + ABZR87_RS22065 0.42 +1.3
1,319,713 + ABZR87_RS22065 0.42 +2.8
1,319,714 - ABZR87_RS22065 0.42 +2.0
1,319,734 + ABZR87_RS22065 0.43 +3.0
1,319,735 - ABZR87_RS22065 0.43 +2.6
1,321,232 + +2.7
1,321,318 + +3.1
1,321,318 + +1.7
1,321,318 + +3.0
1,321,319 - +2.2
1,321,319 - +2.0
1,321,352 - +2.0
1,321,870 + ABZR87_RS22075 0.56 +1.5
1,321,870 + ABZR87_RS22075 0.56 +2.7
1,322,083 + ABZR87_RS22075 0.78 +3.1
1,322,083 + ABZR87_RS22075 0.78 +1.9
1,322,084 - ABZR87_RS22075 0.78 +1.6
1,322,084 - ABZR87_RS22075 0.78 +2.4
1,322,084 - ABZR87_RS22075 0.78 +0.7
1,322,084 - ABZR87_RS22075 0.78 +2.7

Or see this region's nucleotide sequence