Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS21975

Experiment: root sample 5; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS21970 and ABZR87_RS21975 are separated by 1 nucleotidesABZR87_RS21975 and ABZR87_RS21980 overlap by 4 nucleotidesABZR87_RS21980 and ABZR87_RS21985 overlap by 4 nucleotides ABZR87_RS21970: ABZR87_RS21970 - baseplate J/gp47 family protein, at 1,302,138 to 1,303,268 _RS21970 ABZR87_RS21975: ABZR87_RS21975 - hypothetical protein, at 1,303,270 to 1,303,650 _RS21975 ABZR87_RS21980: ABZR87_RS21980 - phage baseplate assembly protein V, at 1,303,647 to 1,304,315 _RS21980 ABZR87_RS21985: ABZR87_RS21985 - contractile injection system protein, VgrG/Pvc8 family, at 1,304,312 to 1,305,571 _RS21985 Position (kb) 1303 1304Strain fitness (log2 ratio) -2 -1 0 1 2at 1302.283 kb on + strand, within ABZR87_RS21970at 1302.284 kb on - strand, within ABZR87_RS21970at 1302.319 kb on + strand, within ABZR87_RS21970at 1302.319 kb on + strand, within ABZR87_RS21970at 1302.319 kb on + strand, within ABZR87_RS21970at 1302.320 kb on - strand, within ABZR87_RS21970at 1302.345 kb on + strand, within ABZR87_RS21970at 1302.345 kb on + strand, within ABZR87_RS21970at 1302.387 kb on - strand, within ABZR87_RS21970at 1302.387 kb on - strand, within ABZR87_RS21970at 1302.387 kb on - strand, within ABZR87_RS21970at 1302.387 kb on - strand, within ABZR87_RS21970at 1302.387 kb on - strand, within ABZR87_RS21970at 1302.396 kb on + strand, within ABZR87_RS21970at 1302.427 kb on - strand, within ABZR87_RS21970at 1302.427 kb on - strand, within ABZR87_RS21970at 1302.427 kb on - strand, within ABZR87_RS21970at 1302.430 kb on + strand, within ABZR87_RS21970at 1302.430 kb on + strand, within ABZR87_RS21970at 1302.430 kb on + strand, within ABZR87_RS21970at 1302.431 kb on - strand, within ABZR87_RS21970at 1302.431 kb on - strand, within ABZR87_RS21970at 1302.431 kb on - strand, within ABZR87_RS21970at 1302.431 kb on - strand, within ABZR87_RS21970at 1302.431 kb on - strand, within ABZR87_RS21970at 1302.431 kb on - strand, within ABZR87_RS21970at 1302.475 kb on - strand, within ABZR87_RS21970at 1302.475 kb on - strand, within ABZR87_RS21970at 1302.475 kb on - strand, within ABZR87_RS21970at 1302.475 kb on - strand, within ABZR87_RS21970at 1302.497 kb on + strand, within ABZR87_RS21970at 1302.498 kb on - strand, within ABZR87_RS21970at 1302.498 kb on - strand, within ABZR87_RS21970at 1302.560 kb on - strand, within ABZR87_RS21970at 1302.583 kb on + strand, within ABZR87_RS21970at 1302.583 kb on - strand, within ABZR87_RS21970at 1302.584 kb on - strand, within ABZR87_RS21970at 1302.658 kb on + strand, within ABZR87_RS21970at 1302.659 kb on - strand, within ABZR87_RS21970at 1302.659 kb on - strand, within ABZR87_RS21970at 1302.659 kb on - strand, within ABZR87_RS21970at 1302.659 kb on - strand, within ABZR87_RS21970at 1302.759 kb on + strand, within ABZR87_RS21970at 1302.760 kb on - strand, within ABZR87_RS21970at 1302.760 kb on - strand, within ABZR87_RS21970at 1302.878 kb on + strand, within ABZR87_RS21970at 1302.880 kb on + strand, within ABZR87_RS21970at 1303.055 kb on + strand, within ABZR87_RS21970at 1303.055 kb on + strand, within ABZR87_RS21970at 1303.056 kb on - strand, within ABZR87_RS21970at 1303.205 kb on - strandat 1303.268 kb on + strandat 1303.268 kb on + strandat 1303.268 kb on + strandat 1303.268 kb on + strandat 1303.268 kb on + strandat 1303.268 kb on + strandat 1303.268 kb on + strandat 1303.269 kb on - strandat 1303.269 kb on - strandat 1303.269 kb on - strandat 1303.269 kb on - strandat 1303.269 kb on - strandat 1303.269 kb on - strandat 1303.270 kb on - strandat 1303.325 kb on + strand, within ABZR87_RS21975at 1303.325 kb on + strand, within ABZR87_RS21975at 1303.326 kb on - strand, within ABZR87_RS21975at 1303.488 kb on - strand, within ABZR87_RS21975at 1303.505 kb on + strand, within ABZR87_RS21975at 1303.505 kb on + strand, within ABZR87_RS21975at 1303.505 kb on + strand, within ABZR87_RS21975at 1303.505 kb on + strand, within ABZR87_RS21975at 1303.505 kb on + strand, within ABZR87_RS21975at 1303.506 kb on - strand, within ABZR87_RS21975at 1303.506 kb on - strand, within ABZR87_RS21975at 1303.506 kb on - strand, within ABZR87_RS21975at 1303.506 kb on - strand, within ABZR87_RS21975at 1303.664 kb on + strandat 1303.665 kb on - strandat 1303.704 kb on - strandat 1303.704 kb on - strandat 1303.704 kb on - strandat 1303.751 kb on + strand, within ABZR87_RS21980at 1303.751 kb on + strand, within ABZR87_RS21980at 1303.752 kb on - strand, within ABZR87_RS21980at 1303.752 kb on - strand, within ABZR87_RS21980at 1303.920 kb on - strand, within ABZR87_RS21980at 1304.036 kb on - strand, within ABZR87_RS21980at 1304.036 kb on - strand, within ABZR87_RS21980at 1304.225 kb on - strand, within ABZR87_RS21980at 1304.225 kb on - strand, within ABZR87_RS21980at 1304.349 kb on - strandat 1304.361 kb on + strandat 1304.361 kb on + strandat 1304.362 kb on - strandat 1304.406 kb on + strandat 1304.407 kb on - strandat 1304.407 kb on - strandat 1304.431 kb on + strandat 1304.431 kb on + strandat 1304.431 kb on + strandat 1304.493 kb on - strand, within ABZR87_RS21985at 1304.493 kb on - strand, within ABZR87_RS21985at 1304.523 kb on + strand, within ABZR87_RS21985at 1304.625 kb on + strand, within ABZR87_RS21985

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Per-strain Table

Position Strand Gene LocusTag Fraction root sample 5; outgrowth in LB
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1,302,283 + ABZR87_RS21970 0.13 +0.5
1,302,284 - ABZR87_RS21970 0.13 +1.4
1,302,319 + ABZR87_RS21970 0.16 +2.4
1,302,319 + ABZR87_RS21970 0.16 -0.5
1,302,319 + ABZR87_RS21970 0.16 +1.5
1,302,320 - ABZR87_RS21970 0.16 -1.2
1,302,345 + ABZR87_RS21970 0.18 +0.3
1,302,345 + ABZR87_RS21970 0.18 +1.3
1,302,387 - ABZR87_RS21970 0.22 -0.9
1,302,387 - ABZR87_RS21970 0.22 +0.2
1,302,387 - ABZR87_RS21970 0.22 -2.5
1,302,387 - ABZR87_RS21970 0.22 +0.1
1,302,387 - ABZR87_RS21970 0.22 -0.3
1,302,396 + ABZR87_RS21970 0.23 -0.9
1,302,427 - ABZR87_RS21970 0.26 -0.6
1,302,427 - ABZR87_RS21970 0.26 +1.2
1,302,427 - ABZR87_RS21970 0.26 -1.9
1,302,430 + ABZR87_RS21970 0.26 -1.1
1,302,430 + ABZR87_RS21970 0.26 -0.8
1,302,430 + ABZR87_RS21970 0.26 -1.0
1,302,431 - ABZR87_RS21970 0.26 +1.0
1,302,431 - ABZR87_RS21970 0.26 -2.1
1,302,431 - ABZR87_RS21970 0.26 -1.0
1,302,431 - ABZR87_RS21970 0.26 -0.4
1,302,431 - ABZR87_RS21970 0.26 +0.3
1,302,431 - ABZR87_RS21970 0.26 +1.0
1,302,475 - ABZR87_RS21970 0.30 -0.4
1,302,475 - ABZR87_RS21970 0.30 -0.5
1,302,475 - ABZR87_RS21970 0.30 +0.3
1,302,475 - ABZR87_RS21970 0.30 -1.6
1,302,497 + ABZR87_RS21970 0.32 +0.5
1,302,498 - ABZR87_RS21970 0.32 -0.7
1,302,498 - ABZR87_RS21970 0.32 +0.9
1,302,560 - ABZR87_RS21970 0.37 -1.3
1,302,583 + ABZR87_RS21970 0.39 +1.6
1,302,583 - ABZR87_RS21970 0.39 -0.2
1,302,584 - ABZR87_RS21970 0.39 -0.6
1,302,658 + ABZR87_RS21970 0.46 -1.7
1,302,659 - ABZR87_RS21970 0.46 -0.7
1,302,659 - ABZR87_RS21970 0.46 -1.0
1,302,659 - ABZR87_RS21970 0.46 +1.0
1,302,659 - ABZR87_RS21970 0.46 -1.0
1,302,759 + ABZR87_RS21970 0.55 +0.5
1,302,760 - ABZR87_RS21970 0.55 -0.8
1,302,760 - ABZR87_RS21970 0.55 +0.3
1,302,878 + ABZR87_RS21970 0.65 +1.0
1,302,880 + ABZR87_RS21970 0.66 +0.9
1,303,055 + ABZR87_RS21970 0.81 -1.1
1,303,055 + ABZR87_RS21970 0.81 -0.2
1,303,056 - ABZR87_RS21970 0.81 -0.5
1,303,205 - -1.4
1,303,268 + +0.2
1,303,268 + -0.5
1,303,268 + -0.2
1,303,268 + -0.3
1,303,268 + +2.7
1,303,268 + +0.9
1,303,268 + -0.9
1,303,269 - -1.3
1,303,269 - +1.1
1,303,269 - -0.9
1,303,269 - -1.3
1,303,269 - -0.2
1,303,269 - -1.9
1,303,270 - +0.7
1,303,325 + ABZR87_RS21975 0.14 +0.5
1,303,325 + ABZR87_RS21975 0.14 +1.8
1,303,326 - ABZR87_RS21975 0.15 +1.2
1,303,488 - ABZR87_RS21975 0.57 -1.7
1,303,505 + ABZR87_RS21975 0.62 +0.6
1,303,505 + ABZR87_RS21975 0.62 -1.2
1,303,505 + ABZR87_RS21975 0.62 -1.0
1,303,505 + ABZR87_RS21975 0.62 -0.2
1,303,505 + ABZR87_RS21975 0.62 +2.0
1,303,506 - ABZR87_RS21975 0.62 -0.7
1,303,506 - ABZR87_RS21975 0.62 +0.6
1,303,506 - ABZR87_RS21975 0.62 -1.2
1,303,506 - ABZR87_RS21975 0.62 -0.1
1,303,664 + -0.1
1,303,665 - -2.4
1,303,704 - +0.7
1,303,704 - -0.6
1,303,704 - -0.0
1,303,751 + ABZR87_RS21980 0.16 -0.0
1,303,751 + ABZR87_RS21980 0.16 -1.4
1,303,752 - ABZR87_RS21980 0.16 -0.0
1,303,752 - ABZR87_RS21980 0.16 -0.5
1,303,920 - ABZR87_RS21980 0.41 -0.9
1,304,036 - ABZR87_RS21980 0.58 -1.2
1,304,036 - ABZR87_RS21980 0.58 -0.4
1,304,225 - ABZR87_RS21980 0.86 +0.0
1,304,225 - ABZR87_RS21980 0.86 -0.9
1,304,349 - +0.8
1,304,361 + +0.6
1,304,361 + +0.0
1,304,362 - -0.7
1,304,406 + +0.1
1,304,407 - -0.4
1,304,407 - -0.9
1,304,431 + -0.8
1,304,431 + -2.2
1,304,431 + -0.3
1,304,493 - ABZR87_RS21985 0.14 -0.7
1,304,493 - ABZR87_RS21985 0.14 -1.6
1,304,523 + ABZR87_RS21985 0.17 -0.8
1,304,625 + ABZR87_RS21985 0.25 +1.4

Or see this region's nucleotide sequence