Experiment: root sample 5; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS20395 and ABZR87_RS20400 are separated by 60 nucleotides ABZR87_RS20400 and ABZR87_RS20405 overlap by 4 nucleotides
ABZR87_RS20395: ABZR87_RS20395 - acyl-CoA dehydrogenase family protein, at 963,552 to 964,760
_RS20395
ABZR87_RS20400: ABZR87_RS20400 - cysteine dioxygenase, at 964,821 to 965,489
_RS20400
ABZR87_RS20405: ABZR87_RS20405 - rhodanese-related sulfurtransferase, at 965,486 to 967,126
_RS20405
Position (kb) 964
965
966 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 963.831 kb on + strand, within ABZR87_RS20395 at 963.831 kb on + strand, within ABZR87_RS20395 at 963.832 kb on - strand, within ABZR87_RS20395 at 963.864 kb on - strand, within ABZR87_RS20395 at 964.039 kb on - strand, within ABZR87_RS20395 at 964.356 kb on + strand, within ABZR87_RS20395 at 964.356 kb on + strand, within ABZR87_RS20395 at 964.489 kb on + strand, within ABZR87_RS20395 at 964.579 kb on - strand, within ABZR87_RS20395 at 964.856 kb on + strand at 964.857 kb on - strand at 965.035 kb on - strand, within ABZR87_RS20400 at 965.035 kb on - strand, within ABZR87_RS20400 at 965.193 kb on + strand, within ABZR87_RS20400 at 965.392 kb on - strand, within ABZR87_RS20400 at 965.393 kb on + strand, within ABZR87_RS20400 at 965.393 kb on + strand, within ABZR87_RS20400 at 965.393 kb on + strand, within ABZR87_RS20400 at 965.561 kb on + strand at 965.633 kb on + strand at 965.634 kb on - strand at 965.634 kb on - strand at 965.798 kb on + strand, within ABZR87_RS20405 at 965.799 kb on - strand, within ABZR87_RS20405 at 965.799 kb on - strand, within ABZR87_RS20405 at 965.800 kb on + strand, within ABZR87_RS20405 at 965.800 kb on + strand, within ABZR87_RS20405 at 965.800 kb on + strand, within ABZR87_RS20405 at 965.801 kb on - strand, within ABZR87_RS20405 at 965.801 kb on - strand, within ABZR87_RS20405 at 965.810 kb on + strand, within ABZR87_RS20405 at 965.810 kb on + strand, within ABZR87_RS20405 at 965.900 kb on + strand, within ABZR87_RS20405 at 965.900 kb on + strand, within ABZR87_RS20405 at 965.901 kb on - strand, within ABZR87_RS20405 at 965.901 kb on - strand, within ABZR87_RS20405 at 966.000 kb on - strand, within ABZR87_RS20405 at 966.000 kb on - strand, within ABZR87_RS20405 at 966.110 kb on - strand, within ABZR87_RS20405 at 966.110 kb on - strand, within ABZR87_RS20405 at 966.387 kb on - strand, within ABZR87_RS20405 at 966.399 kb on + strand, within ABZR87_RS20405 at 966.399 kb on + strand, within ABZR87_RS20405 at 966.399 kb on + strand, within ABZR87_RS20405 at 966.399 kb on + strand, within ABZR87_RS20405 at 966.399 kb on + strand, within ABZR87_RS20405 at 966.400 kb on - strand, within ABZR87_RS20405 at 966.400 kb on - strand, within ABZR87_RS20405 at 966.400 kb on - strand, within ABZR87_RS20405 at 966.416 kb on + strand, within ABZR87_RS20405 at 966.416 kb on + strand, within ABZR87_RS20405
Per-strain Table
Position Strand Gene LocusTag Fraction root sample 5; outgrowth in LB remove 963,831 + ABZR87_RS20395 0.23 +1.5 963,831 + ABZR87_RS20395 0.23 -1.2 963,832 - ABZR87_RS20395 0.23 +0.3 963,864 - ABZR87_RS20395 0.26 -0.4 964,039 - ABZR87_RS20395 0.40 -1.1 964,356 + ABZR87_RS20395 0.67 -1.4 964,356 + ABZR87_RS20395 0.67 -0.1 964,489 + ABZR87_RS20395 0.78 +0.3 964,579 - ABZR87_RS20395 0.85 -1.1 964,856 + +0.3 964,857 - +0.2 965,035 - ABZR87_RS20400 0.32 -1.0 965,035 - ABZR87_RS20400 0.32 +0.0 965,193 + ABZR87_RS20400 0.56 -0.8 965,392 - ABZR87_RS20400 0.85 -1.1 965,393 + ABZR87_RS20400 0.86 -1.6 965,393 + ABZR87_RS20400 0.86 -0.7 965,393 + ABZR87_RS20400 0.86 -0.9 965,561 + -2.1 965,633 + -1.1 965,634 - -2.4 965,634 - +0.0 965,798 + ABZR87_RS20405 0.19 -0.6 965,799 - ABZR87_RS20405 0.19 +0.1 965,799 - ABZR87_RS20405 0.19 -1.6 965,800 + ABZR87_RS20405 0.19 +0.0 965,800 + ABZR87_RS20405 0.19 +0.8 965,800 + ABZR87_RS20405 0.19 +5.5 965,801 - ABZR87_RS20405 0.19 +3.6 965,801 - ABZR87_RS20405 0.19 -0.1 965,810 + ABZR87_RS20405 0.20 -0.4 965,810 + ABZR87_RS20405 0.20 -2.6 965,900 + ABZR87_RS20405 0.25 -0.4 965,900 + ABZR87_RS20405 0.25 -1.6 965,901 - ABZR87_RS20405 0.25 -2.8 965,901 - ABZR87_RS20405 0.25 +0.1 966,000 - ABZR87_RS20405 0.31 -0.3 966,000 - ABZR87_RS20405 0.31 +0.2 966,110 - ABZR87_RS20405 0.38 -0.9 966,110 - ABZR87_RS20405 0.38 +2.3 966,387 - ABZR87_RS20405 0.55 -0.0 966,399 + ABZR87_RS20405 0.56 -0.7 966,399 + ABZR87_RS20405 0.56 +0.2 966,399 + ABZR87_RS20405 0.56 -1.1 966,399 + ABZR87_RS20405 0.56 -0.4 966,399 + ABZR87_RS20405 0.56 -1.3 966,400 - ABZR87_RS20405 0.56 -2.5 966,400 - ABZR87_RS20405 0.56 -0.7 966,400 - ABZR87_RS20405 0.56 -0.7 966,416 + ABZR87_RS20405 0.57 +1.3 966,416 + ABZR87_RS20405 0.57 -0.9
Or see this region's nucleotide sequence