Experiment: root sample 5; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS20245 and ABZR87_RS20250 are separated by 481 nucleotides ABZR87_RS20250 and ABZR87_RS20255 are separated by 15 nucleotides
ABZR87_RS20245: ABZR87_RS20245 - hypothetical protein, at 928,855 to 929,442
_RS20245
ABZR87_RS20250: ABZR87_RS20250 - type VI secretion system lipoprotein TssJ, at 929,924 to 930,517
_RS20250
ABZR87_RS20255: ABZR87_RS20255 - type VI secretion system baseplate subunit TssK, at 930,533 to 931,879
_RS20255
Position (kb) 929
930
931 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 929.219 kb on + strand, within ABZR87_RS20245 at 929.220 kb on - strand, within ABZR87_RS20245 at 929.300 kb on + strand, within ABZR87_RS20245 at 929.301 kb on - strand, within ABZR87_RS20245 at 929.301 kb on - strand, within ABZR87_RS20245 at 929.467 kb on - strand at 929.467 kb on - strand at 929.552 kb on + strand at 929.553 kb on - strand at 929.553 kb on - strand at 929.553 kb on - strand at 929.579 kb on + strand at 929.579 kb on + strand at 929.579 kb on + strand at 929.579 kb on + strand at 929.579 kb on + strand at 929.580 kb on - strand at 929.580 kb on - strand at 929.580 kb on - strand at 929.580 kb on - strand at 929.580 kb on - strand at 929.582 kb on + strand at 929.582 kb on + strand at 929.582 kb on + strand at 929.620 kb on + strand at 929.621 kb on - strand at 929.623 kb on + strand at 929.645 kb on + strand at 929.645 kb on + strand at 929.652 kb on + strand at 929.652 kb on + strand at 930.143 kb on + strand, within ABZR87_RS20250 at 930.183 kb on - strand, within ABZR87_RS20250 at 930.540 kb on - strand at 930.540 kb on - strand at 930.570 kb on + strand at 930.608 kb on + strand at 930.608 kb on + strand at 930.608 kb on + strand at 930.608 kb on + strand at 930.608 kb on + strand at 930.608 kb on + strand at 930.609 kb on - strand at 930.609 kb on - strand at 930.609 kb on - strand at 930.653 kb on + strand at 930.653 kb on + strand at 930.653 kb on + strand at 930.654 kb on - strand at 930.654 kb on - strand at 930.755 kb on + strand, within ABZR87_RS20255 at 930.755 kb on + strand, within ABZR87_RS20255 at 930.756 kb on - strand, within ABZR87_RS20255 at 930.756 kb on - strand, within ABZR87_RS20255 at 930.756 kb on - strand, within ABZR87_RS20255 at 930.849 kb on - strand, within ABZR87_RS20255 at 930.875 kb on + strand, within ABZR87_RS20255 at 930.944 kb on + strand, within ABZR87_RS20255 at 930.946 kb on + strand, within ABZR87_RS20255 at 930.946 kb on + strand, within ABZR87_RS20255 at 930.947 kb on - strand, within ABZR87_RS20255 at 930.947 kb on - strand, within ABZR87_RS20255 at 930.947 kb on - strand, within ABZR87_RS20255 at 930.947 kb on - strand, within ABZR87_RS20255 at 930.974 kb on + strand, within ABZR87_RS20255 at 930.974 kb on + strand, within ABZR87_RS20255 at 930.974 kb on + strand, within ABZR87_RS20255 at 930.975 kb on - strand, within ABZR87_RS20255 at 930.975 kb on - strand, within ABZR87_RS20255 at 930.975 kb on - strand, within ABZR87_RS20255 at 931.133 kb on + strand, within ABZR87_RS20255 at 931.133 kb on + strand, within ABZR87_RS20255 at 931.134 kb on - strand, within ABZR87_RS20255 at 931.134 kb on - strand, within ABZR87_RS20255 at 931.188 kb on - strand, within ABZR87_RS20255 at 931.188 kb on - strand, within ABZR87_RS20255 at 931.264 kb on + strand, within ABZR87_RS20255 at 931.265 kb on - strand, within ABZR87_RS20255 at 931.301 kb on + strand, within ABZR87_RS20255 at 931.301 kb on + strand, within ABZR87_RS20255 at 931.301 kb on + strand, within ABZR87_RS20255 at 931.301 kb on + strand, within ABZR87_RS20255 at 931.301 kb on + strand, within ABZR87_RS20255 at 931.301 kb on + strand, within ABZR87_RS20255 at 931.301 kb on + strand, within ABZR87_RS20255 at 931.302 kb on - strand, within ABZR87_RS20255 at 931.302 kb on - strand, within ABZR87_RS20255 at 931.302 kb on - strand, within ABZR87_RS20255 at 931.302 kb on - strand, within ABZR87_RS20255 at 931.385 kb on + strand, within ABZR87_RS20255 at 931.385 kb on + strand, within ABZR87_RS20255 at 931.386 kb on - strand, within ABZR87_RS20255 at 931.386 kb on - strand, within ABZR87_RS20255 at 931.386 kb on - strand, within ABZR87_RS20255 at 931.386 kb on - strand, within ABZR87_RS20255 at 931.386 kb on - strand, within ABZR87_RS20255 at 931.386 kb on - strand, within ABZR87_RS20255 at 931.409 kb on + strand, within ABZR87_RS20255 at 931.410 kb on - strand, within ABZR87_RS20255 at 931.410 kb on - strand, within ABZR87_RS20255 at 931.475 kb on - strand, within ABZR87_RS20255 at 931.475 kb on - strand, within ABZR87_RS20255 at 931.493 kb on + strand, within ABZR87_RS20255 at 931.493 kb on + strand, within ABZR87_RS20255 at 931.494 kb on - strand, within ABZR87_RS20255
Per-strain Table
Position Strand Gene LocusTag Fraction root sample 5; outgrowth in LB remove 929,219 + ABZR87_RS20245 0.62 +1.1 929,220 - ABZR87_RS20245 0.62 -1.7 929,300 + ABZR87_RS20245 0.76 -0.6 929,301 - ABZR87_RS20245 0.76 -1.0 929,301 - ABZR87_RS20245 0.76 +0.6 929,467 - +0.3 929,467 - +1.2 929,552 + -0.4 929,553 - -0.4 929,553 - +1.5 929,553 - -0.3 929,579 + -0.1 929,579 + +0.2 929,579 + +0.9 929,579 + -1.7 929,579 + -0.1 929,580 - -1.1 929,580 - -1.1 929,580 - +0.5 929,580 - -0.6 929,580 - -1.6 929,582 + -0.7 929,582 + -2.1 929,582 + -1.9 929,620 + -0.6 929,621 - -2.1 929,623 + +0.9 929,645 + +1.3 929,645 + +0.4 929,652 + -0.4 929,652 + -0.9 930,143 + ABZR87_RS20250 0.37 -1.2 930,183 - ABZR87_RS20250 0.44 -1.5 930,540 - -1.4 930,540 - -1.0 930,570 + +2.0 930,608 + -0.7 930,608 + +0.4 930,608 + +0.1 930,608 + +0.5 930,608 + -2.0 930,608 + -0.5 930,609 - +0.5 930,609 - -0.6 930,609 - +1.7 930,653 + -1.9 930,653 + +0.9 930,653 + -0.5 930,654 - -0.8 930,654 - +0.2 930,755 + ABZR87_RS20255 0.16 -0.5 930,755 + ABZR87_RS20255 0.16 +0.4 930,756 - ABZR87_RS20255 0.17 +0.6 930,756 - ABZR87_RS20255 0.17 -0.7 930,756 - ABZR87_RS20255 0.17 -0.6 930,849 - ABZR87_RS20255 0.23 -0.6 930,875 + ABZR87_RS20255 0.25 -2.1 930,944 + ABZR87_RS20255 0.31 +0.1 930,946 + ABZR87_RS20255 0.31 +0.7 930,946 + ABZR87_RS20255 0.31 -0.5 930,947 - ABZR87_RS20255 0.31 -0.8 930,947 - ABZR87_RS20255 0.31 -0.3 930,947 - ABZR87_RS20255 0.31 +0.8 930,947 - ABZR87_RS20255 0.31 -0.9 930,974 + ABZR87_RS20255 0.33 -2.0 930,974 + ABZR87_RS20255 0.33 -0.2 930,974 + ABZR87_RS20255 0.33 +0.8 930,975 - ABZR87_RS20255 0.33 -0.8 930,975 - ABZR87_RS20255 0.33 -1.7 930,975 - ABZR87_RS20255 0.33 +0.1 931,133 + ABZR87_RS20255 0.45 +0.5 931,133 + ABZR87_RS20255 0.45 -0.8 931,134 - ABZR87_RS20255 0.45 -0.3 931,134 - ABZR87_RS20255 0.45 -0.1 931,188 - ABZR87_RS20255 0.49 -1.5 931,188 - ABZR87_RS20255 0.49 +0.3 931,264 + ABZR87_RS20255 0.54 +0.1 931,265 - ABZR87_RS20255 0.54 -0.8 931,301 + ABZR87_RS20255 0.57 -0.3 931,301 + ABZR87_RS20255 0.57 +0.4 931,301 + ABZR87_RS20255 0.57 +2.6 931,301 + ABZR87_RS20255 0.57 -0.1 931,301 + ABZR87_RS20255 0.57 +1.2 931,301 + ABZR87_RS20255 0.57 +0.7 931,301 + ABZR87_RS20255 0.57 -2.1 931,302 - ABZR87_RS20255 0.57 -0.1 931,302 - ABZR87_RS20255 0.57 +0.4 931,302 - ABZR87_RS20255 0.57 +1.6 931,302 - ABZR87_RS20255 0.57 +0.5 931,385 + ABZR87_RS20255 0.63 -1.1 931,385 + ABZR87_RS20255 0.63 +0.1 931,386 - ABZR87_RS20255 0.63 -2.0 931,386 - ABZR87_RS20255 0.63 -2.3 931,386 - ABZR87_RS20255 0.63 +0.8 931,386 - ABZR87_RS20255 0.63 -2.5 931,386 - ABZR87_RS20255 0.63 +1.9 931,386 - ABZR87_RS20255 0.63 -1.0 931,409 + ABZR87_RS20255 0.65 -0.3 931,410 - ABZR87_RS20255 0.65 -2.1 931,410 - ABZR87_RS20255 0.65 -0.5 931,475 - ABZR87_RS20255 0.70 -1.4 931,475 - ABZR87_RS20255 0.70 -0.2 931,493 + ABZR87_RS20255 0.71 +3.2 931,493 + ABZR87_RS20255 0.71 +1.0 931,494 - ABZR87_RS20255 0.71 -0.9
Or see this region's nucleotide sequence