Experiment: root sample 5; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS19975 and ABZR87_RS19980 are separated by 10 nucleotides ABZR87_RS19980 and ABZR87_RS19985 are separated by 29 nucleotides ABZR87_RS19985 and ABZR87_RS19990 overlap by 4 nucleotides
ABZR87_RS19975: ABZR87_RS19975 - thymidine phosphorylase family protein, at 859,856 to 861,403
_RS19975
ABZR87_RS19980: ABZR87_RS19980 - DUF1488 domain-containing protein, at 861,414 to 861,692
_RS19980
ABZR87_RS19985: ABZR87_RS19985 - ribose-phosphate pyrophosphokinase, at 861,722 to 862,663
_RS19985
ABZR87_RS19990: ABZR87_RS19990 - MBL fold metallo-hydrolase, at 862,660 to 864,024
_RS19990
Position (kb) 861
862
863 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 860.977 kb on + strand, within ABZR87_RS19975 at 860.978 kb on - strand, within ABZR87_RS19975 at 860.991 kb on + strand, within ABZR87_RS19975 at 861.054 kb on + strand, within ABZR87_RS19975 at 861.055 kb on - strand, within ABZR87_RS19975 at 861.300 kb on + strand at 861.300 kb on + strand at 861.300 kb on + strand at 861.300 kb on + strand at 861.301 kb on - strand at 861.301 kb on - strand at 861.301 kb on - strand at 861.301 kb on - strand at 861.301 kb on - strand at 861.301 kb on - strand at 861.301 kb on - strand at 861.301 kb on - strand at 861.301 kb on - strand at 861.322 kb on + strand at 861.322 kb on + strand at 861.322 kb on + strand at 861.322 kb on + strand at 861.322 kb on + strand at 861.323 kb on - strand at 861.323 kb on - strand at 861.323 kb on - strand at 861.323 kb on - strand at 861.323 kb on - strand at 861.323 kb on - strand at 861.323 kb on - strand at 861.410 kb on + strand at 861.410 kb on + strand at 861.410 kb on + strand at 861.411 kb on - strand at 861.411 kb on - strand at 861.411 kb on - strand at 861.411 kb on - strand at 861.411 kb on - strand at 861.411 kb on - strand at 861.411 kb on - strand at 861.596 kb on - strand, within ABZR87_RS19980 at 861.656 kb on - strand, within ABZR87_RS19980 at 861.707 kb on - strand at 861.707 kb on - strand at 861.707 kb on - strand at 861.756 kb on - strand at 861.756 kb on - strand at 861.873 kb on + strand, within ABZR87_RS19985 at 861.873 kb on + strand, within ABZR87_RS19985 at 861.873 kb on + strand, within ABZR87_RS19985 at 861.874 kb on - strand, within ABZR87_RS19985 at 861.906 kb on - strand, within ABZR87_RS19985 at 861.906 kb on - strand, within ABZR87_RS19985 at 862.001 kb on + strand, within ABZR87_RS19985 at 862.001 kb on + strand, within ABZR87_RS19985 at 862.001 kb on + strand, within ABZR87_RS19985 at 862.002 kb on - strand, within ABZR87_RS19985 at 862.002 kb on - strand, within ABZR87_RS19985 at 862.002 kb on - strand, within ABZR87_RS19985 at 862.005 kb on + strand, within ABZR87_RS19985 at 862.005 kb on + strand, within ABZR87_RS19985 at 862.005 kb on + strand, within ABZR87_RS19985 at 862.005 kb on + strand, within ABZR87_RS19985 at 862.005 kb on + strand, within ABZR87_RS19985 at 862.006 kb on - strand, within ABZR87_RS19985 at 862.006 kb on - strand, within ABZR87_RS19985 at 862.033 kb on + strand, within ABZR87_RS19985 at 862.033 kb on + strand, within ABZR87_RS19985 at 862.034 kb on - strand, within ABZR87_RS19985 at 862.034 kb on - strand, within ABZR87_RS19985 at 862.160 kb on + strand, within ABZR87_RS19985 at 862.160 kb on + strand, within ABZR87_RS19985 at 862.160 kb on + strand, within ABZR87_RS19985 at 862.160 kb on + strand, within ABZR87_RS19985 at 862.160 kb on + strand, within ABZR87_RS19985 at 862.160 kb on + strand, within ABZR87_RS19985 at 862.160 kb on + strand, within ABZR87_RS19985 at 862.161 kb on - strand, within ABZR87_RS19985 at 862.161 kb on - strand, within ABZR87_RS19985 at 862.224 kb on + strand, within ABZR87_RS19985 at 862.224 kb on + strand, within ABZR87_RS19985 at 862.224 kb on + strand, within ABZR87_RS19985 at 862.360 kb on + strand, within ABZR87_RS19985 at 862.360 kb on + strand, within ABZR87_RS19985 at 862.360 kb on + strand, within ABZR87_RS19985 at 862.360 kb on + strand, within ABZR87_RS19985 at 862.360 kb on + strand, within ABZR87_RS19985 at 862.361 kb on - strand, within ABZR87_RS19985 at 862.361 kb on - strand, within ABZR87_RS19985 at 862.361 kb on - strand, within ABZR87_RS19985 at 862.361 kb on - strand, within ABZR87_RS19985 at 862.361 kb on - strand, within ABZR87_RS19985 at 862.362 kb on + strand, within ABZR87_RS19985 at 862.362 kb on + strand, within ABZR87_RS19985 at 862.362 kb on + strand, within ABZR87_RS19985 at 862.362 kb on + strand, within ABZR87_RS19985 at 862.362 kb on + strand, within ABZR87_RS19985 at 862.362 kb on + strand, within ABZR87_RS19985 at 862.362 kb on + strand, within ABZR87_RS19985 at 862.363 kb on - strand, within ABZR87_RS19985 at 862.363 kb on - strand, within ABZR87_RS19985 at 862.363 kb on - strand, within ABZR87_RS19985 at 862.363 kb on - strand, within ABZR87_RS19985 at 862.363 kb on - strand, within ABZR87_RS19985 at 862.363 kb on - strand, within ABZR87_RS19985 at 862.363 kb on - strand, within ABZR87_RS19985 at 862.372 kb on - strand, within ABZR87_RS19985 at 862.506 kb on + strand, within ABZR87_RS19985 at 862.506 kb on + strand, within ABZR87_RS19985 at 862.507 kb on - strand, within ABZR87_RS19985 at 862.507 kb on - strand, within ABZR87_RS19985 at 862.518 kb on + strand, within ABZR87_RS19985 at 862.518 kb on + strand, within ABZR87_RS19985 at 862.519 kb on - strand, within ABZR87_RS19985 at 862.519 kb on - strand, within ABZR87_RS19985 at 862.679 kb on + strand at 862.679 kb on + strand at 862.692 kb on - strand at 862.692 kb on - strand at 862.800 kb on + strand, within ABZR87_RS19990 at 863.154 kb on + strand, within ABZR87_RS19990 at 863.219 kb on + strand, within ABZR87_RS19990 at 863.219 kb on + strand, within ABZR87_RS19990 at 863.219 kb on + strand, within ABZR87_RS19990 at 863.219 kb on + strand, within ABZR87_RS19990 at 863.219 kb on + strand, within ABZR87_RS19990 at 863.220 kb on - strand, within ABZR87_RS19990 at 863.261 kb on + strand, within ABZR87_RS19990 at 863.261 kb on + strand, within ABZR87_RS19990 at 863.261 kb on + strand, within ABZR87_RS19990 at 863.261 kb on + strand, within ABZR87_RS19990 at 863.262 kb on - strand, within ABZR87_RS19990 at 863.262 kb on - strand, within ABZR87_RS19990 at 863.262 kb on - strand, within ABZR87_RS19990 at 863.262 kb on - strand, within ABZR87_RS19990 at 863.262 kb on - strand, within ABZR87_RS19990 at 863.270 kb on + strand, within ABZR87_RS19990 at 863.270 kb on + strand, within ABZR87_RS19990 at 863.286 kb on + strand, within ABZR87_RS19990 at 863.287 kb on - strand, within ABZR87_RS19990 at 863.399 kb on + strand, within ABZR87_RS19990 at 863.399 kb on + strand, within ABZR87_RS19990 at 863.399 kb on + strand, within ABZR87_RS19990 at 863.399 kb on + strand, within ABZR87_RS19990 at 863.400 kb on - strand, within ABZR87_RS19990 at 863.400 kb on - strand, within ABZR87_RS19990 at 863.601 kb on - strand, within ABZR87_RS19990 at 863.623 kb on + strand, within ABZR87_RS19990 at 863.624 kb on - strand, within ABZR87_RS19990 at 863.624 kb on - strand, within ABZR87_RS19990 at 863.652 kb on - strand, within ABZR87_RS19990
Per-strain Table
Position Strand Gene LocusTag Fraction root sample 5; outgrowth in LB remove 860,977 + ABZR87_RS19975 0.72 +1.7 860,978 - ABZR87_RS19975 0.72 +0.7 860,991 + ABZR87_RS19975 0.73 -1.3 861,054 + ABZR87_RS19975 0.77 +0.3 861,055 - ABZR87_RS19975 0.77 +0.1 861,300 + +0.7 861,300 + -0.0 861,300 + +2.3 861,300 + -1.7 861,301 - -1.4 861,301 - -1.0 861,301 - -0.5 861,301 - -0.5 861,301 - +0.7 861,301 - +0.1 861,301 - +1.1 861,301 - -0.3 861,301 - +0.8 861,322 + +3.6 861,322 + -1.2 861,322 + -2.8 861,322 + +0.4 861,322 + +0.9 861,323 - +0.5 861,323 - +1.9 861,323 - -1.1 861,323 - -0.5 861,323 - -0.7 861,323 - -0.8 861,323 - -0.0 861,410 + +0.9 861,410 + +1.8 861,410 + -1.7 861,411 - -2.6 861,411 - -0.1 861,411 - -0.6 861,411 - +2.4 861,411 - +1.8 861,411 - -1.3 861,411 - +0.8 861,596 - ABZR87_RS19980 0.65 -0.6 861,656 - ABZR87_RS19980 0.87 +0.5 861,707 - -0.0 861,707 - +0.4 861,707 - +1.0 861,756 - -0.7 861,756 - -0.8 861,873 + ABZR87_RS19985 0.16 -1.1 861,873 + ABZR87_RS19985 0.16 -0.7 861,873 + ABZR87_RS19985 0.16 +0.2 861,874 - ABZR87_RS19985 0.16 -1.8 861,906 - ABZR87_RS19985 0.20 -1.6 861,906 - ABZR87_RS19985 0.20 +1.4 862,001 + ABZR87_RS19985 0.30 +0.1 862,001 + ABZR87_RS19985 0.30 +1.1 862,001 + ABZR87_RS19985 0.30 -0.3 862,002 - ABZR87_RS19985 0.30 +0.3 862,002 - ABZR87_RS19985 0.30 -0.9 862,002 - ABZR87_RS19985 0.30 +0.9 862,005 + ABZR87_RS19985 0.30 -0.7 862,005 + ABZR87_RS19985 0.30 +1.3 862,005 + ABZR87_RS19985 0.30 -1.2 862,005 + ABZR87_RS19985 0.30 +0.2 862,005 + ABZR87_RS19985 0.30 +0.7 862,006 - ABZR87_RS19985 0.30 +1.0 862,006 - ABZR87_RS19985 0.30 +0.7 862,033 + ABZR87_RS19985 0.33 -0.4 862,033 + ABZR87_RS19985 0.33 -1.4 862,034 - ABZR87_RS19985 0.33 +0.2 862,034 - ABZR87_RS19985 0.33 -1.2 862,160 + ABZR87_RS19985 0.46 -0.4 862,160 + ABZR87_RS19985 0.46 -0.8 862,160 + ABZR87_RS19985 0.46 +0.2 862,160 + ABZR87_RS19985 0.46 -1.7 862,160 + ABZR87_RS19985 0.46 +1.2 862,160 + ABZR87_RS19985 0.46 -0.7 862,160 + ABZR87_RS19985 0.46 +1.7 862,161 - ABZR87_RS19985 0.47 +0.3 862,161 - ABZR87_RS19985 0.47 -0.9 862,224 + ABZR87_RS19985 0.53 -2.8 862,224 + ABZR87_RS19985 0.53 -1.8 862,224 + ABZR87_RS19985 0.53 -0.3 862,360 + ABZR87_RS19985 0.68 -0.4 862,360 + ABZR87_RS19985 0.68 +0.8 862,360 + ABZR87_RS19985 0.68 -1.7 862,360 + ABZR87_RS19985 0.68 +0.3 862,360 + ABZR87_RS19985 0.68 +0.8 862,361 - ABZR87_RS19985 0.68 -0.0 862,361 - ABZR87_RS19985 0.68 +1.0 862,361 - ABZR87_RS19985 0.68 +0.4 862,361 - ABZR87_RS19985 0.68 -0.3 862,361 - ABZR87_RS19985 0.68 +0.2 862,362 + ABZR87_RS19985 0.68 +0.6 862,362 + ABZR87_RS19985 0.68 -0.6 862,362 + ABZR87_RS19985 0.68 -0.5 862,362 + ABZR87_RS19985 0.68 -0.9 862,362 + ABZR87_RS19985 0.68 -0.9 862,362 + ABZR87_RS19985 0.68 +0.1 862,362 + ABZR87_RS19985 0.68 +0.4 862,363 - ABZR87_RS19985 0.68 -2.0 862,363 - ABZR87_RS19985 0.68 -0.0 862,363 - ABZR87_RS19985 0.68 -0.2 862,363 - ABZR87_RS19985 0.68 -0.8 862,363 - ABZR87_RS19985 0.68 -0.3 862,363 - ABZR87_RS19985 0.68 -1.3 862,363 - ABZR87_RS19985 0.68 -1.7 862,372 - ABZR87_RS19985 0.69 +1.0 862,506 + ABZR87_RS19985 0.83 -0.0 862,506 + ABZR87_RS19985 0.83 -0.2 862,507 - ABZR87_RS19985 0.83 +0.4 862,507 - ABZR87_RS19985 0.83 -0.6 862,518 + ABZR87_RS19985 0.85 -1.6 862,518 + ABZR87_RS19985 0.85 -0.7 862,519 - ABZR87_RS19985 0.85 +0.1 862,519 - ABZR87_RS19985 0.85 +0.4 862,679 + -0.9 862,679 + +0.4 862,692 - -1.3 862,692 - +0.1 862,800 + ABZR87_RS19990 0.10 -1.9 863,154 + ABZR87_RS19990 0.36 -0.2 863,219 + ABZR87_RS19990 0.41 -0.1 863,219 + ABZR87_RS19990 0.41 -0.3 863,219 + ABZR87_RS19990 0.41 +0.4 863,219 + ABZR87_RS19990 0.41 +0.8 863,219 + ABZR87_RS19990 0.41 +0.5 863,220 - ABZR87_RS19990 0.41 -1.8 863,261 + ABZR87_RS19990 0.44 +1.5 863,261 + ABZR87_RS19990 0.44 -0.6 863,261 + ABZR87_RS19990 0.44 +1.8 863,261 + ABZR87_RS19990 0.44 -0.5 863,262 - ABZR87_RS19990 0.44 -0.6 863,262 - ABZR87_RS19990 0.44 +0.2 863,262 - ABZR87_RS19990 0.44 -1.2 863,262 - ABZR87_RS19990 0.44 -1.8 863,262 - ABZR87_RS19990 0.44 -1.3 863,270 + ABZR87_RS19990 0.45 -0.9 863,270 + ABZR87_RS19990 0.45 -1.0 863,286 + ABZR87_RS19990 0.46 +0.3 863,287 - ABZR87_RS19990 0.46 -0.0 863,399 + ABZR87_RS19990 0.54 +0.0 863,399 + ABZR87_RS19990 0.54 -0.3 863,399 + ABZR87_RS19990 0.54 +0.7 863,399 + ABZR87_RS19990 0.54 +1.7 863,400 - ABZR87_RS19990 0.54 -0.9 863,400 - ABZR87_RS19990 0.54 -0.6 863,601 - ABZR87_RS19990 0.69 -0.6 863,623 + ABZR87_RS19990 0.71 +1.6 863,624 - ABZR87_RS19990 0.71 -0.6 863,624 - ABZR87_RS19990 0.71 +0.1 863,652 - ABZR87_RS19990 0.73 -0.2
Or see this region's nucleotide sequence