Experiment: root sample 5; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS19855 and ABZR87_RS19860 are separated by 14 nucleotides ABZR87_RS19860 and ABZR87_RS19865 are separated by 189 nucleotides
ABZR87_RS19855: ABZR87_RS19855 - ATP-dependent RNA helicase DbpA, at 828,633 to 830,030
_RS19855
ABZR87_RS19860: ABZR87_RS19860 - hypothetical protein, at 830,045 to 830,230
_RS19860
ABZR87_RS19865: ABZR87_RS19865 - c-type cytochrome, at 830,420 to 831,271
_RS19865
Position (kb) 830
831 Strain fitness (log2 ratio) -2
-1
0
1
2 at 829.300 kb on + strand, within ABZR87_RS19855 at 829.354 kb on + strand, within ABZR87_RS19855 at 829.355 kb on - strand, within ABZR87_RS19855 at 829.355 kb on - strand, within ABZR87_RS19855 at 829.355 kb on - strand, within ABZR87_RS19855 at 829.456 kb on + strand, within ABZR87_RS19855 at 829.457 kb on - strand, within ABZR87_RS19855 at 829.689 kb on - strand, within ABZR87_RS19855 at 829.713 kb on + strand, within ABZR87_RS19855 at 829.713 kb on + strand, within ABZR87_RS19855 at 829.713 kb on + strand, within ABZR87_RS19855 at 829.713 kb on + strand, within ABZR87_RS19855 at 829.714 kb on - strand, within ABZR87_RS19855 at 829.714 kb on - strand, within ABZR87_RS19855 at 829.714 kb on - strand, within ABZR87_RS19855 at 829.948 kb on + strand at 829.949 kb on - strand at 830.076 kb on + strand, within ABZR87_RS19860 at 830.076 kb on + strand, within ABZR87_RS19860 at 830.076 kb on + strand, within ABZR87_RS19860 at 830.077 kb on - strand, within ABZR87_RS19860 at 830.077 kb on - strand, within ABZR87_RS19860 at 830.115 kb on + strand, within ABZR87_RS19860 at 830.116 kb on - strand, within ABZR87_RS19860 at 830.290 kb on + strand at 830.290 kb on + strand at 830.290 kb on + strand at 830.290 kb on + strand at 830.290 kb on + strand at 830.291 kb on - strand at 830.347 kb on + strand at 830.347 kb on + strand at 830.377 kb on + strand at 830.421 kb on + strand at 830.469 kb on + strand at 830.469 kb on + strand at 830.469 kb on + strand at 830.470 kb on - strand at 830.764 kb on - strand, within ABZR87_RS19865 at 830.851 kb on - strand, within ABZR87_RS19865 at 830.874 kb on + strand, within ABZR87_RS19865 at 830.874 kb on + strand, within ABZR87_RS19865 at 830.874 kb on + strand, within ABZR87_RS19865 at 830.875 kb on - strand, within ABZR87_RS19865 at 831.115 kb on + strand, within ABZR87_RS19865 at 831.115 kb on + strand, within ABZR87_RS19865 at 831.177 kb on + strand, within ABZR87_RS19865 at 831.177 kb on + strand, within ABZR87_RS19865 at 831.177 kb on + strand, within ABZR87_RS19865 at 831.177 kb on + strand, within ABZR87_RS19865 at 831.177 kb on + strand, within ABZR87_RS19865 at 831.177 kb on + strand, within ABZR87_RS19865 at 831.178 kb on - strand, within ABZR87_RS19865 at 831.178 kb on - strand, within ABZR87_RS19865 at 831.228 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction root sample 5; outgrowth in LB remove 829,300 + ABZR87_RS19855 0.48 -0.3 829,354 + ABZR87_RS19855 0.52 -2.5 829,355 - ABZR87_RS19855 0.52 +0.9 829,355 - ABZR87_RS19855 0.52 +2.0 829,355 - ABZR87_RS19855 0.52 -0.9 829,456 + ABZR87_RS19855 0.59 -1.5 829,457 - ABZR87_RS19855 0.59 -1.8 829,689 - ABZR87_RS19855 0.76 +0.2 829,713 + ABZR87_RS19855 0.77 +0.5 829,713 + ABZR87_RS19855 0.77 -0.9 829,713 + ABZR87_RS19855 0.77 +0.8 829,713 + ABZR87_RS19855 0.77 -0.8 829,714 - ABZR87_RS19855 0.77 -1.6 829,714 - ABZR87_RS19855 0.77 -1.0 829,714 - ABZR87_RS19855 0.77 -1.0 829,948 + -1.7 829,949 - -1.1 830,076 + ABZR87_RS19860 0.17 -0.3 830,076 + ABZR87_RS19860 0.17 -1.5 830,076 + ABZR87_RS19860 0.17 -0.2 830,077 - ABZR87_RS19860 0.17 +0.5 830,077 - ABZR87_RS19860 0.17 -0.2 830,115 + ABZR87_RS19860 0.38 +1.0 830,116 - ABZR87_RS19860 0.38 +1.1 830,290 + +0.8 830,290 + +0.4 830,290 + -0.3 830,290 + +1.6 830,290 + +0.4 830,291 - -0.4 830,347 + +0.7 830,347 + -0.1 830,377 + -0.5 830,421 + +1.8 830,469 + -0.7 830,469 + -0.1 830,469 + +0.2 830,470 - -1.0 830,764 - ABZR87_RS19865 0.40 -1.1 830,851 - ABZR87_RS19865 0.51 +0.3 830,874 + ABZR87_RS19865 0.53 -0.3 830,874 + ABZR87_RS19865 0.53 -1.0 830,874 + ABZR87_RS19865 0.53 -0.6 830,875 - ABZR87_RS19865 0.53 -0.3 831,115 + ABZR87_RS19865 0.82 -0.1 831,115 + ABZR87_RS19865 0.82 +0.1 831,177 + ABZR87_RS19865 0.89 -0.8 831,177 + ABZR87_RS19865 0.89 -1.8 831,177 + ABZR87_RS19865 0.89 +0.6 831,177 + ABZR87_RS19865 0.89 -0.4 831,177 + ABZR87_RS19865 0.89 -0.9 831,177 + ABZR87_RS19865 0.89 -2.3 831,178 - ABZR87_RS19865 0.89 -0.3 831,178 - ABZR87_RS19865 0.89 -0.2 831,228 - +1.6
Or see this region's nucleotide sequence