Experiment: root sample 5; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS19575 and ABZR87_RS19580 are separated by 106 nucleotides ABZR87_RS19580 and ABZR87_RS19585 are separated by 150 nucleotides
ABZR87_RS19575: ABZR87_RS19575 - sigma-54-dependent Fis family transcriptional regulator, at 763,471 to 764,886
_RS19575
ABZR87_RS19580: ABZR87_RS19580 - DUF2968 domain-containing protein, at 764,993 to 765,784
_RS19580
ABZR87_RS19585: ABZR87_RS19585 - cytochrome P450, at 765,935 to 769,174
_RS19585
Position (kb) 764
765
766 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 764.128 kb on + strand, within ABZR87_RS19575 at 764.128 kb on + strand, within ABZR87_RS19575 at 764.128 kb on + strand, within ABZR87_RS19575 at 764.129 kb on - strand, within ABZR87_RS19575 at 764.129 kb on - strand, within ABZR87_RS19575 at 764.129 kb on - strand, within ABZR87_RS19575 at 764.129 kb on - strand, within ABZR87_RS19575 at 764.129 kb on - strand, within ABZR87_RS19575 at 764.143 kb on + strand, within ABZR87_RS19575 at 764.203 kb on + strand, within ABZR87_RS19575 at 764.204 kb on - strand, within ABZR87_RS19575 at 764.204 kb on - strand, within ABZR87_RS19575 at 764.356 kb on + strand, within ABZR87_RS19575 at 764.356 kb on + strand, within ABZR87_RS19575 at 764.357 kb on - strand, within ABZR87_RS19575 at 764.357 kb on - strand, within ABZR87_RS19575 at 764.357 kb on - strand, within ABZR87_RS19575 at 764.357 kb on - strand, within ABZR87_RS19575 at 764.357 kb on - strand, within ABZR87_RS19575 at 764.357 kb on - strand, within ABZR87_RS19575 at 764.525 kb on - strand, within ABZR87_RS19575 at 764.668 kb on - strand, within ABZR87_RS19575 at 764.842 kb on + strand at 764.843 kb on - strand at 764.843 kb on - strand at 764.843 kb on - strand at 764.892 kb on + strand at 764.892 kb on + strand at 764.892 kb on + strand at 764.892 kb on + strand at 764.893 kb on - strand at 764.893 kb on - strand at 764.893 kb on - strand at 764.893 kb on - strand at 764.893 kb on - strand at 764.893 kb on - strand at 764.893 kb on - strand at 764.893 kb on - strand at 764.893 kb on - strand at 764.893 kb on - strand at 764.903 kb on - strand at 764.948 kb on + strand at 764.949 kb on - strand at 764.949 kb on - strand at 764.949 kb on - strand at 764.950 kb on + strand at 764.951 kb on - strand at 764.951 kb on - strand at 764.951 kb on - strand at 764.951 kb on - strand at 765.083 kb on - strand, within ABZR87_RS19580 at 765.279 kb on + strand, within ABZR87_RS19580 at 765.335 kb on + strand, within ABZR87_RS19580 at 765.335 kb on + strand, within ABZR87_RS19580 at 765.335 kb on + strand, within ABZR87_RS19580 at 765.335 kb on + strand, within ABZR87_RS19580 at 765.335 kb on + strand, within ABZR87_RS19580 at 765.336 kb on - strand, within ABZR87_RS19580 at 765.336 kb on - strand, within ABZR87_RS19580 at 765.336 kb on - strand, within ABZR87_RS19580 at 765.336 kb on - strand, within ABZR87_RS19580 at 765.336 kb on - strand, within ABZR87_RS19580 at 765.336 kb on - strand, within ABZR87_RS19580 at 765.336 kb on - strand, within ABZR87_RS19580 at 765.347 kb on + strand, within ABZR87_RS19580 at 765.347 kb on + strand, within ABZR87_RS19580 at 765.347 kb on + strand, within ABZR87_RS19580 at 765.386 kb on + strand, within ABZR87_RS19580 at 765.386 kb on + strand, within ABZR87_RS19580 at 765.386 kb on + strand, within ABZR87_RS19580 at 765.386 kb on + strand, within ABZR87_RS19580 at 765.387 kb on - strand, within ABZR87_RS19580 at 765.387 kb on - strand, within ABZR87_RS19580 at 765.387 kb on - strand, within ABZR87_RS19580 at 765.387 kb on - strand, within ABZR87_RS19580 at 765.387 kb on - strand, within ABZR87_RS19580 at 765.387 kb on - strand, within ABZR87_RS19580 at 765.387 kb on - strand, within ABZR87_RS19580 at 765.389 kb on + strand, within ABZR87_RS19580 at 765.389 kb on + strand, within ABZR87_RS19580 at 765.389 kb on + strand, within ABZR87_RS19580 at 765.389 kb on + strand, within ABZR87_RS19580 at 765.389 kb on + strand, within ABZR87_RS19580 at 765.389 kb on + strand, within ABZR87_RS19580 at 765.389 kb on + strand, within ABZR87_RS19580 at 765.389 kb on + strand, within ABZR87_RS19580 at 765.390 kb on - strand, within ABZR87_RS19580 at 765.390 kb on - strand, within ABZR87_RS19580 at 765.390 kb on - strand, within ABZR87_RS19580 at 765.390 kb on - strand, within ABZR87_RS19580 at 765.464 kb on + strand, within ABZR87_RS19580 at 765.464 kb on + strand, within ABZR87_RS19580 at 765.465 kb on - strand, within ABZR87_RS19580 at 765.465 kb on - strand, within ABZR87_RS19580 at 765.605 kb on - strand, within ABZR87_RS19580 at 765.843 kb on - strand at 765.897 kb on + strand at 765.897 kb on + strand at 765.897 kb on + strand at 765.897 kb on + strand at 765.897 kb on + strand at 765.897 kb on + strand at 765.898 kb on - strand at 765.898 kb on - strand at 765.898 kb on - strand at 766.000 kb on + strand at 766.001 kb on - strand at 766.001 kb on - strand at 766.001 kb on - strand at 766.097 kb on + strand at 766.136 kb on + strand at 766.136 kb on + strand at 766.137 kb on - strand at 766.322 kb on + strand, within ABZR87_RS19585 at 766.323 kb on - strand, within ABZR87_RS19585 at 766.477 kb on + strand, within ABZR87_RS19585
Per-strain Table
Position Strand Gene LocusTag Fraction root sample 5; outgrowth in LB remove 764,128 + ABZR87_RS19575 0.46 -0.4 764,128 + ABZR87_RS19575 0.46 -1.6 764,128 + ABZR87_RS19575 0.46 +2.4 764,129 - ABZR87_RS19575 0.46 +0.3 764,129 - ABZR87_RS19575 0.46 -2.0 764,129 - ABZR87_RS19575 0.46 +0.6 764,129 - ABZR87_RS19575 0.46 -1.0 764,129 - ABZR87_RS19575 0.46 -1.8 764,143 + ABZR87_RS19575 0.47 +1.4 764,203 + ABZR87_RS19575 0.52 +0.4 764,204 - ABZR87_RS19575 0.52 -1.9 764,204 - ABZR87_RS19575 0.52 -1.6 764,356 + ABZR87_RS19575 0.62 -0.4 764,356 + ABZR87_RS19575 0.62 -0.9 764,357 - ABZR87_RS19575 0.63 +1.2 764,357 - ABZR87_RS19575 0.63 -0.4 764,357 - ABZR87_RS19575 0.63 -0.6 764,357 - ABZR87_RS19575 0.63 -0.7 764,357 - ABZR87_RS19575 0.63 -0.3 764,357 - ABZR87_RS19575 0.63 -2.3 764,525 - ABZR87_RS19575 0.74 -2.1 764,668 - ABZR87_RS19575 0.85 -1.3 764,842 + -0.6 764,843 - +0.7 764,843 - -2.3 764,843 - +0.9 764,892 + +0.4 764,892 + -0.3 764,892 + -1.4 764,892 + -0.3 764,893 - +0.2 764,893 - -1.4 764,893 - -0.6 764,893 - +0.1 764,893 - -1.4 764,893 - +0.1 764,893 - +0.1 764,893 - -0.4 764,893 - +1.3 764,893 - -0.9 764,903 - +1.1 764,948 + -0.0 764,949 - +1.3 764,949 - +0.0 764,949 - -0.0 764,950 + +0.9 764,951 - +0.2 764,951 - +0.9 764,951 - +0.4 764,951 - +1.7 765,083 - ABZR87_RS19580 0.11 -0.3 765,279 + ABZR87_RS19580 0.36 +0.1 765,335 + ABZR87_RS19580 0.43 -0.1 765,335 + ABZR87_RS19580 0.43 +0.9 765,335 + ABZR87_RS19580 0.43 +1.6 765,335 + ABZR87_RS19580 0.43 -0.8 765,335 + ABZR87_RS19580 0.43 +0.1 765,336 - ABZR87_RS19580 0.43 +1.7 765,336 - ABZR87_RS19580 0.43 +1.6 765,336 - ABZR87_RS19580 0.43 -0.5 765,336 - ABZR87_RS19580 0.43 +0.7 765,336 - ABZR87_RS19580 0.43 -0.9 765,336 - ABZR87_RS19580 0.43 +0.8 765,336 - ABZR87_RS19580 0.43 -0.5 765,347 + ABZR87_RS19580 0.45 +1.0 765,347 + ABZR87_RS19580 0.45 +2.6 765,347 + ABZR87_RS19580 0.45 -0.2 765,386 + ABZR87_RS19580 0.50 -1.1 765,386 + ABZR87_RS19580 0.50 -0.7 765,386 + ABZR87_RS19580 0.50 +1.6 765,386 + ABZR87_RS19580 0.50 +2.0 765,387 - ABZR87_RS19580 0.50 +1.4 765,387 - ABZR87_RS19580 0.50 -0.5 765,387 - ABZR87_RS19580 0.50 +0.4 765,387 - ABZR87_RS19580 0.50 +1.0 765,387 - ABZR87_RS19580 0.50 +0.9 765,387 - ABZR87_RS19580 0.50 +0.2 765,387 - ABZR87_RS19580 0.50 -0.8 765,389 + ABZR87_RS19580 0.50 +3.7 765,389 + ABZR87_RS19580 0.50 +1.0 765,389 + ABZR87_RS19580 0.50 -1.8 765,389 + ABZR87_RS19580 0.50 +2.0 765,389 + ABZR87_RS19580 0.50 +1.7 765,389 + ABZR87_RS19580 0.50 +2.5 765,389 + ABZR87_RS19580 0.50 -0.6 765,389 + ABZR87_RS19580 0.50 -0.9 765,390 - ABZR87_RS19580 0.50 +0.4 765,390 - ABZR87_RS19580 0.50 +0.2 765,390 - ABZR87_RS19580 0.50 -1.6 765,390 - ABZR87_RS19580 0.50 +0.1 765,464 + ABZR87_RS19580 0.59 +2.1 765,464 + ABZR87_RS19580 0.59 +1.7 765,465 - ABZR87_RS19580 0.60 +0.6 765,465 - ABZR87_RS19580 0.60 +0.2 765,605 - ABZR87_RS19580 0.77 -2.2 765,843 - -2.4 765,897 + +1.2 765,897 + +0.6 765,897 + -0.3 765,897 + +0.8 765,897 + +0.6 765,897 + +1.2 765,898 - -0.8 765,898 - -1.1 765,898 - -0.1 766,000 + -0.4 766,001 - -1.5 766,001 - +0.5 766,001 - -0.2 766,097 + -0.7 766,136 + +1.1 766,136 + -0.8 766,137 - -0.9 766,322 + ABZR87_RS19585 0.12 +0.8 766,323 - ABZR87_RS19585 0.12 -0.2 766,477 + ABZR87_RS19585 0.17 +2.6
Or see this region's nucleotide sequence