Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS19575

Experiment: root sample 5; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS19570 and ABZR87_RS19575 are separated by 15 nucleotidesABZR87_RS19575 and ABZR87_RS19580 are separated by 106 nucleotides ABZR87_RS19570: ABZR87_RS19570 - TadG family pilus assembly protein, at 761,812 to 763,455 _RS19570 ABZR87_RS19575: ABZR87_RS19575 - sigma-54-dependent Fis family transcriptional regulator, at 763,471 to 764,886 _RS19575 ABZR87_RS19580: ABZR87_RS19580 - DUF2968 domain-containing protein, at 764,993 to 765,784 _RS19580 Position (kb) 763 764 765Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6at 762.526 kb on - strand, within ABZR87_RS19570at 762.526 kb on - strand, within ABZR87_RS19570at 762.526 kb on - strand, within ABZR87_RS19570at 762.839 kb on + strand, within ABZR87_RS19570at 762.840 kb on - strand, within ABZR87_RS19570at 762.840 kb on - strand, within ABZR87_RS19570at 762.840 kb on - strand, within ABZR87_RS19570at 762.840 kb on - strand, within ABZR87_RS19570at 762.840 kb on - strand, within ABZR87_RS19570at 762.876 kb on + strand, within ABZR87_RS19570at 762.876 kb on + strand, within ABZR87_RS19570at 762.876 kb on + strand, within ABZR87_RS19570at 762.876 kb on + strand, within ABZR87_RS19570at 762.876 kb on + strand, within ABZR87_RS19570at 762.877 kb on - strand, within ABZR87_RS19570at 762.877 kb on - strand, within ABZR87_RS19570at 762.877 kb on - strand, within ABZR87_RS19570at 762.877 kb on - strand, within ABZR87_RS19570at 762.995 kb on + strand, within ABZR87_RS19570at 762.996 kb on - strand, within ABZR87_RS19570at 762.996 kb on - strand, within ABZR87_RS19570at 762.996 kb on - strand, within ABZR87_RS19570at 762.996 kb on - strand, within ABZR87_RS19570at 762.996 kb on - strand, within ABZR87_RS19570at 762.999 kb on + strand, within ABZR87_RS19570at 762.999 kb on + strand, within ABZR87_RS19570at 762.999 kb on + strand, within ABZR87_RS19570at 762.999 kb on + strand, within ABZR87_RS19570at 762.999 kb on + strand, within ABZR87_RS19570at 762.999 kb on + strand, within ABZR87_RS19570at 762.999 kb on + strand, within ABZR87_RS19570at 763.000 kb on - strand, within ABZR87_RS19570at 763.000 kb on - strand, within ABZR87_RS19570at 763.000 kb on - strand, within ABZR87_RS19570at 763.000 kb on - strand, within ABZR87_RS19570at 763.000 kb on - strand, within ABZR87_RS19570at 763.000 kb on - strand, within ABZR87_RS19570at 763.017 kb on + strand, within ABZR87_RS19570at 763.017 kb on + strand, within ABZR87_RS19570at 763.017 kb on + strand, within ABZR87_RS19570at 763.018 kb on - strand, within ABZR87_RS19570at 763.018 kb on - strand, within ABZR87_RS19570at 763.018 kb on - strand, within ABZR87_RS19570at 763.018 kb on - strand, within ABZR87_RS19570at 763.018 kb on - strand, within ABZR87_RS19570at 763.018 kb on - strand, within ABZR87_RS19570at 763.189 kb on - strand, within ABZR87_RS19570at 763.189 kb on - strand, within ABZR87_RS19570at 763.229 kb on + strand, within ABZR87_RS19570at 763.370 kb on + strandat 763.451 kb on - strandat 763.451 kb on - strandat 763.677 kb on + strand, within ABZR87_RS19575at 763.677 kb on + strand, within ABZR87_RS19575at 763.677 kb on + strand, within ABZR87_RS19575at 763.769 kb on - strand, within ABZR87_RS19575at 763.769 kb on - strand, within ABZR87_RS19575at 763.774 kb on + strand, within ABZR87_RS19575at 763.774 kb on + strand, within ABZR87_RS19575at 763.774 kb on + strand, within ABZR87_RS19575at 763.774 kb on + strand, within ABZR87_RS19575at 763.774 kb on + strand, within ABZR87_RS19575at 763.774 kb on + strand, within ABZR87_RS19575at 763.774 kb on + strand, within ABZR87_RS19575at 763.774 kb on + strand, within ABZR87_RS19575at 763.774 kb on + strand, within ABZR87_RS19575at 763.774 kb on + strand, within ABZR87_RS19575at 763.774 kb on + strand, within ABZR87_RS19575at 763.775 kb on - strand, within ABZR87_RS19575at 763.775 kb on - strand, within ABZR87_RS19575at 763.775 kb on - strand, within ABZR87_RS19575at 763.775 kb on - strand, within ABZR87_RS19575at 763.775 kb on - strand, within ABZR87_RS19575at 763.775 kb on - strand, within ABZR87_RS19575at 763.775 kb on - strand, within ABZR87_RS19575at 763.775 kb on - strand, within ABZR87_RS19575at 763.775 kb on - strand, within ABZR87_RS19575at 763.775 kb on - strand, within ABZR87_RS19575at 763.775 kb on - strand, within ABZR87_RS19575at 763.775 kb on - strand, within ABZR87_RS19575at 763.960 kb on + strand, within ABZR87_RS19575at 763.961 kb on - strand, within ABZR87_RS19575at 763.961 kb on - strand, within ABZR87_RS19575at 764.128 kb on + strand, within ABZR87_RS19575at 764.128 kb on + strand, within ABZR87_RS19575at 764.128 kb on + strand, within ABZR87_RS19575at 764.129 kb on - strand, within ABZR87_RS19575at 764.129 kb on - strand, within ABZR87_RS19575at 764.129 kb on - strand, within ABZR87_RS19575at 764.129 kb on - strand, within ABZR87_RS19575at 764.129 kb on - strand, within ABZR87_RS19575at 764.143 kb on + strand, within ABZR87_RS19575at 764.203 kb on + strand, within ABZR87_RS19575at 764.204 kb on - strand, within ABZR87_RS19575at 764.204 kb on - strand, within ABZR87_RS19575at 764.356 kb on + strand, within ABZR87_RS19575at 764.356 kb on + strand, within ABZR87_RS19575at 764.357 kb on - strand, within ABZR87_RS19575at 764.357 kb on - strand, within ABZR87_RS19575at 764.357 kb on - strand, within ABZR87_RS19575at 764.357 kb on - strand, within ABZR87_RS19575at 764.357 kb on - strand, within ABZR87_RS19575at 764.357 kb on - strand, within ABZR87_RS19575at 764.525 kb on - strand, within ABZR87_RS19575at 764.668 kb on - strand, within ABZR87_RS19575at 764.842 kb on + strandat 764.843 kb on - strandat 764.843 kb on - strandat 764.843 kb on - strandat 764.892 kb on + strandat 764.892 kb on + strandat 764.892 kb on + strandat 764.892 kb on + strandat 764.893 kb on - strandat 764.893 kb on - strandat 764.893 kb on - strandat 764.893 kb on - strandat 764.893 kb on - strandat 764.893 kb on - strandat 764.893 kb on - strandat 764.893 kb on - strandat 764.893 kb on - strandat 764.893 kb on - strandat 764.903 kb on - strandat 764.948 kb on + strandat 764.949 kb on - strandat 764.949 kb on - strandat 764.949 kb on - strandat 764.950 kb on + strandat 764.951 kb on - strandat 764.951 kb on - strandat 764.951 kb on - strandat 764.951 kb on - strandat 765.083 kb on - strand, within ABZR87_RS19580at 765.279 kb on + strand, within ABZR87_RS19580at 765.335 kb on + strand, within ABZR87_RS19580at 765.335 kb on + strand, within ABZR87_RS19580at 765.335 kb on + strand, within ABZR87_RS19580at 765.335 kb on + strand, within ABZR87_RS19580at 765.335 kb on + strand, within ABZR87_RS19580at 765.336 kb on - strand, within ABZR87_RS19580at 765.336 kb on - strand, within ABZR87_RS19580at 765.336 kb on - strand, within ABZR87_RS19580at 765.336 kb on - strand, within ABZR87_RS19580at 765.336 kb on - strand, within ABZR87_RS19580at 765.336 kb on - strand, within ABZR87_RS19580at 765.336 kb on - strand, within ABZR87_RS19580at 765.347 kb on + strand, within ABZR87_RS19580at 765.347 kb on + strand, within ABZR87_RS19580at 765.347 kb on + strand, within ABZR87_RS19580at 765.386 kb on + strand, within ABZR87_RS19580at 765.386 kb on + strand, within ABZR87_RS19580at 765.386 kb on + strand, within ABZR87_RS19580at 765.386 kb on + strand, within ABZR87_RS19580at 765.387 kb on - strand, within ABZR87_RS19580at 765.387 kb on - strand, within ABZR87_RS19580at 765.387 kb on - strand, within ABZR87_RS19580at 765.387 kb on - strand, within ABZR87_RS19580at 765.387 kb on - strand, within ABZR87_RS19580at 765.387 kb on - strand, within ABZR87_RS19580at 765.387 kb on - strand, within ABZR87_RS19580at 765.389 kb on + strand, within ABZR87_RS19580at 765.389 kb on + strand, within ABZR87_RS19580at 765.389 kb on + strand, within ABZR87_RS19580at 765.389 kb on + strand, within ABZR87_RS19580at 765.389 kb on + strand, within ABZR87_RS19580at 765.389 kb on + strand, within ABZR87_RS19580at 765.389 kb on + strand, within ABZR87_RS19580at 765.389 kb on + strand, within ABZR87_RS19580at 765.390 kb on - strand, within ABZR87_RS19580at 765.390 kb on - strand, within ABZR87_RS19580at 765.390 kb on - strand, within ABZR87_RS19580at 765.390 kb on - strand, within ABZR87_RS19580at 765.464 kb on + strand, within ABZR87_RS19580at 765.464 kb on + strand, within ABZR87_RS19580at 765.465 kb on - strand, within ABZR87_RS19580at 765.465 kb on - strand, within ABZR87_RS19580at 765.605 kb on - strand, within ABZR87_RS19580at 765.843 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction root sample 5; outgrowth in LB
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762,526 - ABZR87_RS19570 0.43 +2.9
762,526 - ABZR87_RS19570 0.43 +2.5
762,526 - ABZR87_RS19570 0.43 +1.8
762,839 + ABZR87_RS19570 0.62 +3.6
762,840 - ABZR87_RS19570 0.63 +2.7
762,840 - ABZR87_RS19570 0.63 +2.4
762,840 - ABZR87_RS19570 0.63 +2.8
762,840 - ABZR87_RS19570 0.63 +2.8
762,840 - ABZR87_RS19570 0.63 +2.3
762,876 + ABZR87_RS19570 0.65 +0.2
762,876 + ABZR87_RS19570 0.65 +2.7
762,876 + ABZR87_RS19570 0.65 +1.9
762,876 + ABZR87_RS19570 0.65 +1.1
762,876 + ABZR87_RS19570 0.65 +1.7
762,877 - ABZR87_RS19570 0.65 +3.9
762,877 - ABZR87_RS19570 0.65 +3.5
762,877 - ABZR87_RS19570 0.65 +2.9
762,877 - ABZR87_RS19570 0.65 +1.8
762,995 + ABZR87_RS19570 0.72 +2.9
762,996 - ABZR87_RS19570 0.72 +2.3
762,996 - ABZR87_RS19570 0.72 +3.0
762,996 - ABZR87_RS19570 0.72 +1.9
762,996 - ABZR87_RS19570 0.72 +1.9
762,996 - ABZR87_RS19570 0.72 +4.0
762,999 + ABZR87_RS19570 0.72 +0.3
762,999 + ABZR87_RS19570 0.72 +0.4
762,999 + ABZR87_RS19570 0.72 +1.1
762,999 + ABZR87_RS19570 0.72 +0.6
762,999 + ABZR87_RS19570 0.72 +1.1
762,999 + ABZR87_RS19570 0.72 -0.7
762,999 + ABZR87_RS19570 0.72 +1.4
763,000 - ABZR87_RS19570 0.72 +2.4
763,000 - ABZR87_RS19570 0.72 +2.8
763,000 - ABZR87_RS19570 0.72 +2.1
763,000 - ABZR87_RS19570 0.72 +0.7
763,000 - ABZR87_RS19570 0.72 +3.7
763,000 - ABZR87_RS19570 0.72 +2.3
763,017 + ABZR87_RS19570 0.73 +2.9
763,017 + ABZR87_RS19570 0.73 +1.5
763,017 + ABZR87_RS19570 0.73 +2.1
763,018 - ABZR87_RS19570 0.73 +1.8
763,018 - ABZR87_RS19570 0.73 +1.5
763,018 - ABZR87_RS19570 0.73 +4.0
763,018 - ABZR87_RS19570 0.73 +5.0
763,018 - ABZR87_RS19570 0.73 +1.9
763,018 - ABZR87_RS19570 0.73 +3.1
763,189 - ABZR87_RS19570 0.84 +1.4
763,189 - ABZR87_RS19570 0.84 +2.1
763,229 + ABZR87_RS19570 0.86 +0.5
763,370 + +5.8
763,451 - +0.3
763,451 - -1.6
763,677 + ABZR87_RS19575 0.15 -1.4
763,677 + ABZR87_RS19575 0.15 -0.5
763,677 + ABZR87_RS19575 0.15 +1.4
763,769 - ABZR87_RS19575 0.21 +0.5
763,769 - ABZR87_RS19575 0.21 -1.9
763,774 + ABZR87_RS19575 0.21 -1.9
763,774 + ABZR87_RS19575 0.21 -1.5
763,774 + ABZR87_RS19575 0.21 -0.5
763,774 + ABZR87_RS19575 0.21 +0.3
763,774 + ABZR87_RS19575 0.21 -0.7
763,774 + ABZR87_RS19575 0.21 +0.8
763,774 + ABZR87_RS19575 0.21 -0.4
763,774 + ABZR87_RS19575 0.21 -2.2
763,774 + ABZR87_RS19575 0.21 -2.1
763,774 + ABZR87_RS19575 0.21 -0.3
763,774 + ABZR87_RS19575 0.21 -2.0
763,775 - ABZR87_RS19575 0.21 -1.1
763,775 - ABZR87_RS19575 0.21 +0.9
763,775 - ABZR87_RS19575 0.21 -1.2
763,775 - ABZR87_RS19575 0.21 +1.6
763,775 - ABZR87_RS19575 0.21 -1.3
763,775 - ABZR87_RS19575 0.21 +0.1
763,775 - ABZR87_RS19575 0.21 -1.2
763,775 - ABZR87_RS19575 0.21 -1.1
763,775 - ABZR87_RS19575 0.21 -2.6
763,775 - ABZR87_RS19575 0.21 -2.8
763,775 - ABZR87_RS19575 0.21 -0.5
763,775 - ABZR87_RS19575 0.21 -0.4
763,960 + ABZR87_RS19575 0.35 -0.1
763,961 - ABZR87_RS19575 0.35 +1.0
763,961 - ABZR87_RS19575 0.35 -0.4
764,128 + ABZR87_RS19575 0.46 -0.4
764,128 + ABZR87_RS19575 0.46 -1.6
764,128 + ABZR87_RS19575 0.46 +2.4
764,129 - ABZR87_RS19575 0.46 +0.3
764,129 - ABZR87_RS19575 0.46 -2.0
764,129 - ABZR87_RS19575 0.46 +0.6
764,129 - ABZR87_RS19575 0.46 -1.0
764,129 - ABZR87_RS19575 0.46 -1.8
764,143 + ABZR87_RS19575 0.47 +1.4
764,203 + ABZR87_RS19575 0.52 +0.4
764,204 - ABZR87_RS19575 0.52 -1.9
764,204 - ABZR87_RS19575 0.52 -1.6
764,356 + ABZR87_RS19575 0.62 -0.4
764,356 + ABZR87_RS19575 0.62 -0.9
764,357 - ABZR87_RS19575 0.63 +1.2
764,357 - ABZR87_RS19575 0.63 -0.4
764,357 - ABZR87_RS19575 0.63 -0.6
764,357 - ABZR87_RS19575 0.63 -0.7
764,357 - ABZR87_RS19575 0.63 -0.3
764,357 - ABZR87_RS19575 0.63 -2.3
764,525 - ABZR87_RS19575 0.74 -2.1
764,668 - ABZR87_RS19575 0.85 -1.3
764,842 + -0.6
764,843 - +0.7
764,843 - -2.3
764,843 - +0.9
764,892 + +0.4
764,892 + -0.3
764,892 + -1.4
764,892 + -0.3
764,893 - +0.2
764,893 - -1.4
764,893 - -0.6
764,893 - +0.1
764,893 - -1.4
764,893 - +0.1
764,893 - +0.1
764,893 - -0.4
764,893 - +1.3
764,893 - -0.9
764,903 - +1.1
764,948 + -0.0
764,949 - +1.3
764,949 - +0.0
764,949 - -0.0
764,950 + +0.9
764,951 - +0.2
764,951 - +0.9
764,951 - +0.4
764,951 - +1.7
765,083 - ABZR87_RS19580 0.11 -0.3
765,279 + ABZR87_RS19580 0.36 +0.1
765,335 + ABZR87_RS19580 0.43 -0.1
765,335 + ABZR87_RS19580 0.43 +0.9
765,335 + ABZR87_RS19580 0.43 +1.6
765,335 + ABZR87_RS19580 0.43 -0.8
765,335 + ABZR87_RS19580 0.43 +0.1
765,336 - ABZR87_RS19580 0.43 +1.7
765,336 - ABZR87_RS19580 0.43 +1.6
765,336 - ABZR87_RS19580 0.43 -0.5
765,336 - ABZR87_RS19580 0.43 +0.7
765,336 - ABZR87_RS19580 0.43 -0.9
765,336 - ABZR87_RS19580 0.43 +0.8
765,336 - ABZR87_RS19580 0.43 -0.5
765,347 + ABZR87_RS19580 0.45 +1.0
765,347 + ABZR87_RS19580 0.45 +2.6
765,347 + ABZR87_RS19580 0.45 -0.2
765,386 + ABZR87_RS19580 0.50 -1.1
765,386 + ABZR87_RS19580 0.50 -0.7
765,386 + ABZR87_RS19580 0.50 +1.6
765,386 + ABZR87_RS19580 0.50 +2.0
765,387 - ABZR87_RS19580 0.50 +1.4
765,387 - ABZR87_RS19580 0.50 -0.5
765,387 - ABZR87_RS19580 0.50 +0.4
765,387 - ABZR87_RS19580 0.50 +1.0
765,387 - ABZR87_RS19580 0.50 +0.9
765,387 - ABZR87_RS19580 0.50 +0.2
765,387 - ABZR87_RS19580 0.50 -0.8
765,389 + ABZR87_RS19580 0.50 +3.7
765,389 + ABZR87_RS19580 0.50 +1.0
765,389 + ABZR87_RS19580 0.50 -1.8
765,389 + ABZR87_RS19580 0.50 +2.0
765,389 + ABZR87_RS19580 0.50 +1.7
765,389 + ABZR87_RS19580 0.50 +2.5
765,389 + ABZR87_RS19580 0.50 -0.6
765,389 + ABZR87_RS19580 0.50 -0.9
765,390 - ABZR87_RS19580 0.50 +0.4
765,390 - ABZR87_RS19580 0.50 +0.2
765,390 - ABZR87_RS19580 0.50 -1.6
765,390 - ABZR87_RS19580 0.50 +0.1
765,464 + ABZR87_RS19580 0.59 +2.1
765,464 + ABZR87_RS19580 0.59 +1.7
765,465 - ABZR87_RS19580 0.60 +0.6
765,465 - ABZR87_RS19580 0.60 +0.2
765,605 - ABZR87_RS19580 0.77 -2.2
765,843 - -2.4

Or see this region's nucleotide sequence