Experiment: root sample 5; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS19535 and ABZR87_RS19540 are separated by 9 nucleotides ABZR87_RS19540 and ABZR87_RS19545 overlap by 4 nucleotides
ABZR87_RS19535: ABZR87_RS19535 - type II and III secretion system protein family protein, at 754,470 to 755,834
_RS19535
ABZR87_RS19540: ABZR87_RS19540 - CpaE family protein, at 755,844 to 757,187
_RS19540
ABZR87_RS19545: ABZR87_RS19545 - CpaF family protein, at 757,184 to 758,539
_RS19545
Position (kb) 755
756
757
758 Strain fitness (log2 ratio) -1
0
1
2
3
4
5
6
7
8 at 754.867 kb on + strand, within ABZR87_RS19535 at 754.867 kb on + strand, within ABZR87_RS19535 at 754.867 kb on + strand, within ABZR87_RS19535 at 754.867 kb on + strand, within ABZR87_RS19535 at 754.868 kb on - strand, within ABZR87_RS19535 at 754.868 kb on - strand, within ABZR87_RS19535 at 754.868 kb on - strand, within ABZR87_RS19535 at 754.868 kb on - strand, within ABZR87_RS19535 at 754.868 kb on - strand, within ABZR87_RS19535 at 754.868 kb on - strand, within ABZR87_RS19535 at 754.868 kb on - strand, within ABZR87_RS19535 at 754.868 kb on - strand, within ABZR87_RS19535 at 754.868 kb on - strand, within ABZR87_RS19535 at 754.868 kb on - strand, within ABZR87_RS19535 at 754.868 kb on - strand, within ABZR87_RS19535 at 754.868 kb on - strand, within ABZR87_RS19535 at 754.869 kb on + strand, within ABZR87_RS19535 at 755.343 kb on + strand, within ABZR87_RS19535 at 755.343 kb on + strand, within ABZR87_RS19535 at 755.344 kb on - strand, within ABZR87_RS19535 at 755.344 kb on - strand, within ABZR87_RS19535 at 755.344 kb on - strand, within ABZR87_RS19535 at 755.344 kb on - strand, within ABZR87_RS19535 at 755.501 kb on + strand, within ABZR87_RS19535 at 755.567 kb on - strand, within ABZR87_RS19535 at 755.637 kb on + strand, within ABZR87_RS19535 at 755.637 kb on + strand, within ABZR87_RS19535 at 755.638 kb on - strand, within ABZR87_RS19535 at 755.638 kb on - strand, within ABZR87_RS19535 at 755.638 kb on - strand, within ABZR87_RS19535 at 755.638 kb on - strand, within ABZR87_RS19535 at 755.638 kb on - strand, within ABZR87_RS19535 at 755.672 kb on + strand, within ABZR87_RS19535 at 755.673 kb on - strand, within ABZR87_RS19535 at 755.832 kb on + strand at 755.832 kb on + strand at 755.833 kb on - strand at 755.833 kb on - strand at 755.833 kb on - strand at 755.850 kb on + strand at 755.850 kb on + strand at 755.850 kb on + strand at 755.850 kb on + strand at 755.851 kb on - strand at 755.851 kb on - strand at 755.851 kb on - strand at 755.851 kb on - strand at 756.058 kb on + strand, within ABZR87_RS19540 at 756.058 kb on + strand, within ABZR87_RS19540 at 756.058 kb on + strand, within ABZR87_RS19540 at 756.460 kb on - strand, within ABZR87_RS19540 at 756.460 kb on - strand, within ABZR87_RS19540 at 756.854 kb on + strand, within ABZR87_RS19540 at 756.854 kb on + strand, within ABZR87_RS19540 at 756.854 kb on + strand, within ABZR87_RS19540 at 756.996 kb on + strand, within ABZR87_RS19540 at 756.996 kb on + strand, within ABZR87_RS19540 at 756.997 kb on - strand, within ABZR87_RS19540 at 756.997 kb on - strand, within ABZR87_RS19540 at 757.378 kb on + strand, within ABZR87_RS19545 at 757.378 kb on + strand, within ABZR87_RS19545 at 757.379 kb on - strand, within ABZR87_RS19545 at 757.529 kb on + strand, within ABZR87_RS19545 at 757.529 kb on + strand, within ABZR87_RS19545 at 757.529 kb on + strand, within ABZR87_RS19545 at 757.529 kb on + strand, within ABZR87_RS19545 at 757.530 kb on - strand, within ABZR87_RS19545 at 757.530 kb on - strand, within ABZR87_RS19545 at 757.530 kb on - strand, within ABZR87_RS19545 at 757.530 kb on - strand, within ABZR87_RS19545 at 757.530 kb on - strand, within ABZR87_RS19545 at 757.901 kb on + strand, within ABZR87_RS19545 at 757.902 kb on - strand, within ABZR87_RS19545 at 757.902 kb on - strand, within ABZR87_RS19545 at 758.129 kb on - strand, within ABZR87_RS19545
Per-strain Table
Position Strand Gene LocusTag Fraction root sample 5; outgrowth in LB remove 754,867 + ABZR87_RS19535 0.29 +0.9 754,867 + ABZR87_RS19535 0.29 +4.4 754,867 + ABZR87_RS19535 0.29 +3.7 754,867 + ABZR87_RS19535 0.29 +1.9 754,868 - ABZR87_RS19535 0.29 +5.1 754,868 - ABZR87_RS19535 0.29 +1.9 754,868 - ABZR87_RS19535 0.29 +1.4 754,868 - ABZR87_RS19535 0.29 +1.9 754,868 - ABZR87_RS19535 0.29 +2.1 754,868 - ABZR87_RS19535 0.29 +1.3 754,868 - ABZR87_RS19535 0.29 +5.1 754,868 - ABZR87_RS19535 0.29 +2.5 754,868 - ABZR87_RS19535 0.29 +4.8 754,868 - ABZR87_RS19535 0.29 +0.9 754,868 - ABZR87_RS19535 0.29 +2.4 754,868 - ABZR87_RS19535 0.29 +2.1 754,869 + ABZR87_RS19535 0.29 +2.3 755,343 + ABZR87_RS19535 0.64 +4.5 755,343 + ABZR87_RS19535 0.64 +4.4 755,344 - ABZR87_RS19535 0.64 -1.2 755,344 - ABZR87_RS19535 0.64 +2.5 755,344 - ABZR87_RS19535 0.64 +2.0 755,344 - ABZR87_RS19535 0.64 +1.9 755,501 + ABZR87_RS19535 0.76 +2.2 755,567 - ABZR87_RS19535 0.80 +3.5 755,637 + ABZR87_RS19535 0.85 +4.0 755,637 + ABZR87_RS19535 0.85 +2.1 755,638 - ABZR87_RS19535 0.86 +2.3 755,638 - ABZR87_RS19535 0.86 +6.3 755,638 - ABZR87_RS19535 0.86 +1.3 755,638 - ABZR87_RS19535 0.86 +2.2 755,638 - ABZR87_RS19535 0.86 +2.5 755,672 + ABZR87_RS19535 0.88 +4.1 755,673 - ABZR87_RS19535 0.88 +7.9 755,832 + +0.3 755,832 + +0.4 755,833 - +2.2 755,833 - +1.7 755,833 - +4.0 755,850 + +1.9 755,850 + +3.0 755,850 + +1.8 755,850 + +3.6 755,851 - +4.9 755,851 - +3.2 755,851 - +4.5 755,851 - +3.0 756,058 + ABZR87_RS19540 0.16 +2.0 756,058 + ABZR87_RS19540 0.16 +7.6 756,058 + ABZR87_RS19540 0.16 +2.0 756,460 - ABZR87_RS19540 0.46 +4.9 756,460 - ABZR87_RS19540 0.46 +2.2 756,854 + ABZR87_RS19540 0.75 +1.9 756,854 + ABZR87_RS19540 0.75 +1.9 756,854 + ABZR87_RS19540 0.75 +3.9 756,996 + ABZR87_RS19540 0.86 +1.0 756,996 + ABZR87_RS19540 0.86 +2.6 756,997 - ABZR87_RS19540 0.86 +3.0 756,997 - ABZR87_RS19540 0.86 +2.1 757,378 + ABZR87_RS19545 0.14 -0.7 757,378 + ABZR87_RS19545 0.14 +1.1 757,379 - ABZR87_RS19545 0.14 +4.5 757,529 + ABZR87_RS19545 0.25 -0.1 757,529 + ABZR87_RS19545 0.25 +0.2 757,529 + ABZR87_RS19545 0.25 +1.0 757,529 + ABZR87_RS19545 0.25 +0.2 757,530 - ABZR87_RS19545 0.26 +2.3 757,530 - ABZR87_RS19545 0.26 +2.5 757,530 - ABZR87_RS19545 0.26 +2.7 757,530 - ABZR87_RS19545 0.26 +3.6 757,530 - ABZR87_RS19545 0.26 +2.5 757,901 + ABZR87_RS19545 0.53 +2.8 757,902 - ABZR87_RS19545 0.53 +3.5 757,902 - ABZR87_RS19545 0.53 +3.5 758,129 - ABZR87_RS19545 0.70 +2.2
Or see this region's nucleotide sequence