Experiment: root sample 5; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS19515 and ABZR87_RS19520 are separated by 92 nucleotides ABZR87_RS19520 and ABZR87_RS19525 are separated by 62 nucleotides ABZR87_RS19525 and ABZR87_RS19530 are separated by 76 nucleotides
ABZR87_RS19515: ABZR87_RS19515 - Flp family type IVb pilin, at 752,172 to 752,351
_RS19515
ABZR87_RS19520: ABZR87_RS19520 - prepilin peptidase, at 752,444 to 752,908
_RS19520
ABZR87_RS19525: ABZR87_RS19525 - TadE/TadG family type IV pilus assembly protein, at 752,971 to 753,474
_RS19525
ABZR87_RS19530: ABZR87_RS19530 - Flp pilus assembly protein CpaB, at 753,551 to 754,477
_RS19530
ABZR87_RS19535: ABZR87_RS19535 - type II and III secretion system protein family protein, at 754,470 to 755,834
_RS19535
Position (kb) 752
753
754 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6
7 at 751.977 kb on + strand at 751.978 kb on - strand at 752.008 kb on + strand at 752.057 kb on + strand at 752.057 kb on + strand at 752.057 kb on + strand at 752.074 kb on + strand at 752.075 kb on - strand at 752.082 kb on - strand at 752.084 kb on + strand at 752.085 kb on - strand at 752.092 kb on - strand at 752.092 kb on - strand at 752.229 kb on + strand, within ABZR87_RS19515 at 752.339 kb on + strand at 752.339 kb on + strand at 752.340 kb on - strand at 752.340 kb on - strand at 752.350 kb on - strand at 752.374 kb on + strand at 752.374 kb on + strand at 752.374 kb on + strand at 752.397 kb on + strand at 752.397 kb on + strand at 752.397 kb on + strand at 752.398 kb on - strand at 752.398 kb on - strand at 752.398 kb on - strand at 752.398 kb on - strand at 752.398 kb on - strand at 752.416 kb on + strand at 752.416 kb on + strand at 752.416 kb on + strand at 752.419 kb on + strand at 752.419 kb on + strand at 752.419 kb on + strand at 752.419 kb on + strand at 752.419 kb on + strand at 752.419 kb on + strand at 752.419 kb on + strand at 752.419 kb on + strand at 752.419 kb on + strand at 752.419 kb on + strand at 752.420 kb on - strand at 752.420 kb on - strand at 752.420 kb on - strand at 752.420 kb on - strand at 752.420 kb on - strand at 752.420 kb on - strand at 752.420 kb on - strand at 752.522 kb on + strand, within ABZR87_RS19520 at 752.523 kb on - strand, within ABZR87_RS19520 at 752.523 kb on - strand, within ABZR87_RS19520 at 752.582 kb on + strand, within ABZR87_RS19520 at 752.582 kb on + strand, within ABZR87_RS19520 at 752.582 kb on + strand, within ABZR87_RS19520 at 752.582 kb on + strand, within ABZR87_RS19520 at 752.582 kb on + strand, within ABZR87_RS19520 at 752.582 kb on + strand, within ABZR87_RS19520 at 752.583 kb on - strand, within ABZR87_RS19520 at 752.583 kb on - strand, within ABZR87_RS19520 at 752.583 kb on - strand, within ABZR87_RS19520 at 752.583 kb on - strand, within ABZR87_RS19520 at 752.583 kb on - strand, within ABZR87_RS19520 at 752.583 kb on - strand, within ABZR87_RS19520 at 752.583 kb on - strand, within ABZR87_RS19520 at 752.687 kb on - strand, within ABZR87_RS19520 at 752.687 kb on - strand, within ABZR87_RS19520 at 752.687 kb on - strand, within ABZR87_RS19520 at 752.819 kb on - strand, within ABZR87_RS19520 at 752.819 kb on - strand, within ABZR87_RS19520 at 752.834 kb on + strand, within ABZR87_RS19520 at 752.834 kb on + strand, within ABZR87_RS19520 at 752.834 kb on + strand, within ABZR87_RS19520 at 752.834 kb on + strand, within ABZR87_RS19520 at 752.834 kb on + strand, within ABZR87_RS19520 at 752.834 kb on + strand, within ABZR87_RS19520 at 752.834 kb on + strand, within ABZR87_RS19520 at 752.834 kb on + strand, within ABZR87_RS19520 at 752.834 kb on + strand, within ABZR87_RS19520 at 752.835 kb on - strand, within ABZR87_RS19520 at 752.835 kb on - strand, within ABZR87_RS19520 at 752.835 kb on - strand, within ABZR87_RS19520 at 752.835 kb on - strand, within ABZR87_RS19520 at 752.835 kb on - strand, within ABZR87_RS19520 at 752.835 kb on - strand, within ABZR87_RS19520 at 752.835 kb on - strand, within ABZR87_RS19520 at 752.835 kb on - strand, within ABZR87_RS19520 at 752.835 kb on - strand, within ABZR87_RS19520 at 752.835 kb on - strand, within ABZR87_RS19520 at 752.835 kb on - strand, within ABZR87_RS19520 at 752.835 kb on - strand, within ABZR87_RS19520 at 752.835 kb on - strand, within ABZR87_RS19520 at 752.835 kb on - strand, within ABZR87_RS19520 at 752.836 kb on + strand, within ABZR87_RS19520 at 752.836 kb on + strand, within ABZR87_RS19520 at 752.837 kb on - strand, within ABZR87_RS19520 at 752.907 kb on - strand at 752.907 kb on - strand at 752.907 kb on - strand at 752.907 kb on - strand at 752.953 kb on + strand at 752.953 kb on + strand at 752.954 kb on - strand at 752.955 kb on + strand at 752.956 kb on - strand at 752.956 kb on - strand at 752.956 kb on - strand at 752.956 kb on - strand at 753.004 kb on + strand at 753.004 kb on + strand at 753.004 kb on + strand at 753.004 kb on + strand at 753.004 kb on + strand at 753.004 kb on + strand at 753.004 kb on + strand at 753.004 kb on + strand at 753.004 kb on + strand at 753.004 kb on + strand at 753.005 kb on - strand at 753.005 kb on - strand at 753.005 kb on - strand at 753.005 kb on - strand at 753.005 kb on - strand at 753.005 kb on - strand at 753.005 kb on - strand at 753.005 kb on - strand at 753.005 kb on - strand at 753.005 kb on - strand at 753.005 kb on - strand at 753.005 kb on - strand at 753.005 kb on - strand at 753.019 kb on - strand at 753.032 kb on + strand, within ABZR87_RS19525 at 753.130 kb on + strand, within ABZR87_RS19525 at 753.131 kb on - strand, within ABZR87_RS19525 at 753.131 kb on - strand, within ABZR87_RS19525 at 753.131 kb on - strand, within ABZR87_RS19525 at 753.131 kb on - strand, within ABZR87_RS19525 at 753.131 kb on - strand, within ABZR87_RS19525 at 753.131 kb on - strand, within ABZR87_RS19525 at 753.131 kb on - strand, within ABZR87_RS19525 at 753.133 kb on + strand, within ABZR87_RS19525 at 753.134 kb on - strand, within ABZR87_RS19525 at 753.134 kb on - strand, within ABZR87_RS19525 at 753.134 kb on - strand, within ABZR87_RS19525 at 753.134 kb on - strand, within ABZR87_RS19525 at 753.206 kb on - strand, within ABZR87_RS19525 at 753.206 kb on - strand, within ABZR87_RS19525 at 753.206 kb on - strand, within ABZR87_RS19525 at 753.242 kb on - strand, within ABZR87_RS19525 at 753.242 kb on - strand, within ABZR87_RS19525 at 753.261 kb on - strand, within ABZR87_RS19525 at 753.407 kb on + strand, within ABZR87_RS19525 at 753.408 kb on - strand, within ABZR87_RS19525 at 753.408 kb on - strand, within ABZR87_RS19525 at 753.472 kb on + strand at 753.472 kb on + strand at 753.472 kb on + strand at 753.472 kb on + strand at 753.473 kb on - strand at 753.473 kb on - strand at 753.473 kb on - strand at 753.536 kb on - strand at 753.619 kb on - strand at 753.681 kb on + strand, within ABZR87_RS19530 at 753.681 kb on + strand, within ABZR87_RS19530 at 753.681 kb on + strand, within ABZR87_RS19530 at 753.681 kb on + strand, within ABZR87_RS19530 at 753.681 kb on + strand, within ABZR87_RS19530 at 753.681 kb on + strand, within ABZR87_RS19530 at 753.681 kb on + strand, within ABZR87_RS19530 at 753.682 kb on - strand, within ABZR87_RS19530 at 753.682 kb on - strand, within ABZR87_RS19530 at 753.682 kb on - strand, within ABZR87_RS19530 at 753.682 kb on - strand, within ABZR87_RS19530 at 753.682 kb on - strand, within ABZR87_RS19530 at 753.682 kb on - strand, within ABZR87_RS19530 at 753.682 kb on - strand, within ABZR87_RS19530 at 753.683 kb on + strand, within ABZR87_RS19530 at 753.698 kb on - strand, within ABZR87_RS19530 at 753.698 kb on - strand, within ABZR87_RS19530 at 753.962 kb on + strand, within ABZR87_RS19530 at 753.962 kb on + strand, within ABZR87_RS19530 at 753.963 kb on - strand, within ABZR87_RS19530 at 753.963 kb on - strand, within ABZR87_RS19530
Per-strain Table
Position Strand Gene LocusTag Fraction root sample 5; outgrowth in LB remove 751,977 + +0.0 751,978 - +6.6 752,008 + -2.3 752,057 + +3.3 752,057 + +1.1 752,057 + +0.7 752,074 + +1.1 752,075 - +3.1 752,082 - +1.9 752,084 + +1.5 752,085 - +0.8 752,092 - +3.3 752,092 - +2.1 752,229 + ABZR87_RS19515 0.32 +0.4 752,339 + +3.8 752,339 + +2.7 752,340 - +3.0 752,340 - +2.0 752,350 - +2.1 752,374 + +2.7 752,374 + +2.9 752,374 + +3.5 752,397 + +1.5 752,397 + +2.6 752,397 + +1.7 752,398 - +1.6 752,398 - +3.1 752,398 - +2.3 752,398 - +4.2 752,398 - +2.7 752,416 + +1.2 752,416 + +2.6 752,416 + +3.5 752,419 + +7.0 752,419 + +3.1 752,419 + +1.9 752,419 + +0.9 752,419 + +2.1 752,419 + +2.8 752,419 + +1.3 752,419 + +2.9 752,419 + +3.4 752,419 + +3.0 752,420 - +5.0 752,420 - +2.1 752,420 - +1.6 752,420 - +2.7 752,420 - +4.0 752,420 - +2.3 752,420 - +1.6 752,522 + ABZR87_RS19520 0.17 +5.2 752,523 - ABZR87_RS19520 0.17 +0.6 752,523 - ABZR87_RS19520 0.17 +2.4 752,582 + ABZR87_RS19520 0.30 +2.4 752,582 + ABZR87_RS19520 0.30 +2.2 752,582 + ABZR87_RS19520 0.30 +3.6 752,582 + ABZR87_RS19520 0.30 +1.4 752,582 + ABZR87_RS19520 0.30 +3.6 752,582 + ABZR87_RS19520 0.30 +3.5 752,583 - ABZR87_RS19520 0.30 +2.2 752,583 - ABZR87_RS19520 0.30 +1.2 752,583 - ABZR87_RS19520 0.30 +3.1 752,583 - ABZR87_RS19520 0.30 +3.2 752,583 - ABZR87_RS19520 0.30 +3.9 752,583 - ABZR87_RS19520 0.30 +2.5 752,583 - ABZR87_RS19520 0.30 +1.3 752,687 - ABZR87_RS19520 0.52 +3.3 752,687 - ABZR87_RS19520 0.52 +0.8 752,687 - ABZR87_RS19520 0.52 +3.3 752,819 - ABZR87_RS19520 0.81 +3.1 752,819 - ABZR87_RS19520 0.81 +2.0 752,834 + ABZR87_RS19520 0.84 +1.6 752,834 + ABZR87_RS19520 0.84 +2.7 752,834 + ABZR87_RS19520 0.84 +2.2 752,834 + ABZR87_RS19520 0.84 +1.4 752,834 + ABZR87_RS19520 0.84 +2.2 752,834 + ABZR87_RS19520 0.84 +3.1 752,834 + ABZR87_RS19520 0.84 +2.6 752,834 + ABZR87_RS19520 0.84 +1.8 752,834 + ABZR87_RS19520 0.84 +2.9 752,835 - ABZR87_RS19520 0.84 +4.3 752,835 - ABZR87_RS19520 0.84 +2.5 752,835 - ABZR87_RS19520 0.84 +1.9 752,835 - ABZR87_RS19520 0.84 +1.7 752,835 - ABZR87_RS19520 0.84 +5.7 752,835 - ABZR87_RS19520 0.84 +2.9 752,835 - ABZR87_RS19520 0.84 +2.2 752,835 - ABZR87_RS19520 0.84 +0.8 752,835 - ABZR87_RS19520 0.84 +2.1 752,835 - ABZR87_RS19520 0.84 +2.5 752,835 - ABZR87_RS19520 0.84 +3.5 752,835 - ABZR87_RS19520 0.84 +2.9 752,835 - ABZR87_RS19520 0.84 +2.0 752,835 - ABZR87_RS19520 0.84 +2.6 752,836 + ABZR87_RS19520 0.84 +3.7 752,836 + ABZR87_RS19520 0.84 +2.1 752,837 - ABZR87_RS19520 0.85 +1.4 752,907 - +2.1 752,907 - +3.2 752,907 - +1.2 752,907 - +2.9 752,953 + +0.4 752,953 + +1.2 752,954 - +0.7 752,955 + -0.9 752,956 - +2.2 752,956 - +1.4 752,956 - +1.6 752,956 - +2.3 753,004 + +5.6 753,004 + +1.2 753,004 + +2.0 753,004 + +0.2 753,004 + +1.6 753,004 + -0.1 753,004 + +0.8 753,004 + +0.5 753,004 + +4.8 753,004 + +1.8 753,005 - +5.1 753,005 - +1.3 753,005 - +4.6 753,005 - +2.2 753,005 - +4.1 753,005 - +3.4 753,005 - +5.3 753,005 - +4.4 753,005 - +4.0 753,005 - +1.3 753,005 - +2.4 753,005 - +2.4 753,005 - +3.9 753,019 - +2.5 753,032 + ABZR87_RS19525 0.12 +4.2 753,130 + ABZR87_RS19525 0.32 +3.4 753,131 - ABZR87_RS19525 0.32 +2.1 753,131 - ABZR87_RS19525 0.32 +0.5 753,131 - ABZR87_RS19525 0.32 +2.4 753,131 - ABZR87_RS19525 0.32 +1.9 753,131 - ABZR87_RS19525 0.32 +0.8 753,131 - ABZR87_RS19525 0.32 +1.0 753,131 - ABZR87_RS19525 0.32 +3.4 753,133 + ABZR87_RS19525 0.32 +2.1 753,134 - ABZR87_RS19525 0.32 +3.1 753,134 - ABZR87_RS19525 0.32 +3.1 753,134 - ABZR87_RS19525 0.32 +2.1 753,134 - ABZR87_RS19525 0.32 -0.0 753,206 - ABZR87_RS19525 0.47 +5.0 753,206 - ABZR87_RS19525 0.47 +1.4 753,206 - ABZR87_RS19525 0.47 +3.2 753,242 - ABZR87_RS19525 0.54 +1.9 753,242 - ABZR87_RS19525 0.54 +0.9 753,261 - ABZR87_RS19525 0.58 +3.7 753,407 + ABZR87_RS19525 0.87 +3.7 753,408 - ABZR87_RS19525 0.87 +1.5 753,408 - ABZR87_RS19525 0.87 +1.8 753,472 + -0.1 753,472 + +0.7 753,472 + -0.3 753,472 + -0.1 753,473 - +1.6 753,473 - +1.8 753,473 - +3.9 753,536 - +2.4 753,619 - +0.9 753,681 + ABZR87_RS19530 0.14 +3.2 753,681 + ABZR87_RS19530 0.14 +3.5 753,681 + ABZR87_RS19530 0.14 +3.3 753,681 + ABZR87_RS19530 0.14 +5.4 753,681 + ABZR87_RS19530 0.14 +2.5 753,681 + ABZR87_RS19530 0.14 +3.8 753,681 + ABZR87_RS19530 0.14 +3.6 753,682 - ABZR87_RS19530 0.14 +2.5 753,682 - ABZR87_RS19530 0.14 +1.9 753,682 - ABZR87_RS19530 0.14 +3.6 753,682 - ABZR87_RS19530 0.14 +1.8 753,682 - ABZR87_RS19530 0.14 +2.2 753,682 - ABZR87_RS19530 0.14 +1.1 753,682 - ABZR87_RS19530 0.14 +2.7 753,683 + ABZR87_RS19530 0.14 +3.5 753,698 - ABZR87_RS19530 0.16 -0.5 753,698 - ABZR87_RS19530 0.16 +2.0 753,962 + ABZR87_RS19530 0.44 +4.0 753,962 + ABZR87_RS19530 0.44 +3.5 753,963 - ABZR87_RS19530 0.44 +1.9 753,963 - ABZR87_RS19530 0.44 +5.6
Or see this region's nucleotide sequence