Experiment: root sample 5; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS19285 and ABZR87_RS19290 are separated by 157 nucleotides ABZR87_RS19290 and ABZR87_RS19295 are separated by 61 nucleotides ABZR87_RS19295 and ABZR87_RS19300 are separated by 1 nucleotides ABZR87_RS19300 and ABZR87_RS19305 overlap by 4 nucleotides
ABZR87_RS19285: ABZR87_RS19285 - FHA domain-containing protein, at 689,006 to 690,109
_RS19285
ABZR87_RS19290: ABZR87_RS19290 - hypothetical protein, at 690,267 to 690,470
_RS19290
ABZR87_RS19295: ABZR87_RS19295 - hypothetical protein, at 690,532 to 691,113
_RS19295
ABZR87_RS19300: ABZR87_RS19300 - type III secretion system inner membrane ring lipoprotein SctJ, at 691,115 to 691,882
_RS19300
ABZR87_RS19305: ABZR87_RS19305 - SctK family type III secretion system sorting platform protein, at 691,879 to 692,541
_RS19305
Position (kb) 690
691
692 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 689.582 kb on + strand, within ABZR87_RS19285 at 689.660 kb on + strand, within ABZR87_RS19285 at 689.660 kb on + strand, within ABZR87_RS19285 at 689.660 kb on + strand, within ABZR87_RS19285 at 689.661 kb on - strand, within ABZR87_RS19285 at 689.661 kb on - strand, within ABZR87_RS19285 at 689.697 kb on - strand, within ABZR87_RS19285 at 689.745 kb on - strand, within ABZR87_RS19285 at 689.816 kb on + strand, within ABZR87_RS19285 at 689.816 kb on + strand, within ABZR87_RS19285 at 689.817 kb on - strand, within ABZR87_RS19285 at 689.940 kb on - strand, within ABZR87_RS19285 at 689.940 kb on - strand, within ABZR87_RS19285 at 689.990 kb on + strand, within ABZR87_RS19285 at 689.991 kb on - strand, within ABZR87_RS19285 at 690.107 kb on + strand at 690.131 kb on + strand at 690.132 kb on - strand at 690.132 kb on - strand at 690.149 kb on + strand at 690.150 kb on - strand at 690.207 kb on + strand at 690.208 kb on - strand at 690.629 kb on + strand, within ABZR87_RS19295 at 690.629 kb on + strand, within ABZR87_RS19295 at 690.629 kb on + strand, within ABZR87_RS19295 at 690.630 kb on - strand, within ABZR87_RS19295 at 690.896 kb on - strand, within ABZR87_RS19295 at 690.919 kb on + strand, within ABZR87_RS19295 at 690.919 kb on + strand, within ABZR87_RS19295 at 691.013 kb on - strand, within ABZR87_RS19295 at 691.013 kb on - strand, within ABZR87_RS19295 at 691.040 kb on - strand, within ABZR87_RS19295 at 691.188 kb on - strand at 691.188 kb on - strand at 691.188 kb on - strand at 691.446 kb on - strand, within ABZR87_RS19300 at 691.451 kb on + strand, within ABZR87_RS19300 at 691.452 kb on - strand, within ABZR87_RS19300 at 691.452 kb on - strand, within ABZR87_RS19300 at 691.515 kb on + strand, within ABZR87_RS19300 at 691.516 kb on - strand, within ABZR87_RS19300 at 691.516 kb on - strand, within ABZR87_RS19300 at 691.516 kb on - strand, within ABZR87_RS19300 at 691.516 kb on - strand, within ABZR87_RS19300 at 691.580 kb on + strand, within ABZR87_RS19300 at 691.580 kb on + strand, within ABZR87_RS19300 at 691.580 kb on + strand, within ABZR87_RS19300 at 691.667 kb on + strand, within ABZR87_RS19300 at 691.667 kb on + strand, within ABZR87_RS19300 at 691.668 kb on - strand, within ABZR87_RS19300 at 691.668 kb on - strand, within ABZR87_RS19300 at 691.677 kb on + strand, within ABZR87_RS19300 at 691.678 kb on - strand, within ABZR87_RS19300 at 691.840 kb on - strand at 691.840 kb on - strand at 691.939 kb on + strand at 691.939 kb on + strand at 691.940 kb on - strand at 691.942 kb on - strand at 691.942 kb on - strand at 692.072 kb on - strand, within ABZR87_RS19305
Per-strain Table
Position Strand Gene LocusTag Fraction root sample 5; outgrowth in LB remove 689,582 + ABZR87_RS19285 0.52 -1.4 689,660 + ABZR87_RS19285 0.59 -0.3 689,660 + ABZR87_RS19285 0.59 -0.9 689,660 + ABZR87_RS19285 0.59 -0.1 689,661 - ABZR87_RS19285 0.59 +0.3 689,661 - ABZR87_RS19285 0.59 +0.2 689,697 - ABZR87_RS19285 0.63 +0.0 689,745 - ABZR87_RS19285 0.67 +1.7 689,816 + ABZR87_RS19285 0.73 +0.8 689,816 + ABZR87_RS19285 0.73 +0.2 689,817 - ABZR87_RS19285 0.73 -1.8 689,940 - ABZR87_RS19285 0.85 -0.1 689,940 - ABZR87_RS19285 0.85 -1.2 689,990 + ABZR87_RS19285 0.89 +0.8 689,991 - ABZR87_RS19285 0.89 +0.8 690,107 + +0.0 690,131 + +1.2 690,132 - +0.4 690,132 - -1.3 690,149 + +1.2 690,150 - +0.6 690,207 + +0.3 690,208 - +0.8 690,629 + ABZR87_RS19295 0.17 -1.5 690,629 + ABZR87_RS19295 0.17 +0.3 690,629 + ABZR87_RS19295 0.17 +0.6 690,630 - ABZR87_RS19295 0.17 -1.0 690,896 - ABZR87_RS19295 0.63 -1.5 690,919 + ABZR87_RS19295 0.66 -2.0 690,919 + ABZR87_RS19295 0.66 +0.2 691,013 - ABZR87_RS19295 0.83 -1.1 691,013 - ABZR87_RS19295 0.83 -2.1 691,040 - ABZR87_RS19295 0.87 -1.0 691,188 - +0.2 691,188 - -0.1 691,188 - +0.1 691,446 - ABZR87_RS19300 0.43 -1.1 691,451 + ABZR87_RS19300 0.44 +0.4 691,452 - ABZR87_RS19300 0.44 +0.7 691,452 - ABZR87_RS19300 0.44 -1.4 691,515 + ABZR87_RS19300 0.52 +1.2 691,516 - ABZR87_RS19300 0.52 -0.2 691,516 - ABZR87_RS19300 0.52 -2.9 691,516 - ABZR87_RS19300 0.52 -1.3 691,516 - ABZR87_RS19300 0.52 -0.7 691,580 + ABZR87_RS19300 0.61 +0.7 691,580 + ABZR87_RS19300 0.61 -2.3 691,580 + ABZR87_RS19300 0.61 -0.5 691,667 + ABZR87_RS19300 0.72 +0.5 691,667 + ABZR87_RS19300 0.72 -1.8 691,668 - ABZR87_RS19300 0.72 -1.0 691,668 - ABZR87_RS19300 0.72 -0.0 691,677 + ABZR87_RS19300 0.73 -1.1 691,678 - ABZR87_RS19300 0.73 -0.8 691,840 - -1.6 691,840 - +0.6 691,939 + +0.8 691,939 + -0.9 691,940 - +0.6 691,942 - -0.4 691,942 - +0.6 692,072 - ABZR87_RS19305 0.29 -2.0
Or see this region's nucleotide sequence