Experiment: root sample 5; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS19240 and ABZR87_RS19245 are separated by 449 nucleotides ABZR87_RS19245 and ABZR87_RS19250 are separated by 68 nucleotides ABZR87_RS19250 and ABZR87_RS19255 are separated by 59 nucleotides
ABZR87_RS19240: ABZR87_RS19240 - molybdate ABC transporter permease subunit, at 678,678 to 679,364
_RS19240
ABZR87_RS19245: ABZR87_RS19245 - LuxR family transcriptional regulator, at 679,814 to 680,917
_RS19245
ABZR87_RS19250: ABZR87_RS19250 - lytic transglycosylase domain-containing protein, at 680,986 to 681,717
_RS19250
ABZR87_RS19255: ABZR87_RS19255 - type III secretion system export apparatus subunit SctR, at 681,777 to 682,436
_RS19255
Position (kb) 679
680
681 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 678.817 kb on + strand, within ABZR87_RS19240 at 678.817 kb on + strand, within ABZR87_RS19240 at 678.817 kb on + strand, within ABZR87_RS19240 at 678.818 kb on - strand, within ABZR87_RS19240 at 679.086 kb on + strand, within ABZR87_RS19240 at 679.087 kb on - strand, within ABZR87_RS19240 at 679.087 kb on - strand, within ABZR87_RS19240 at 679.103 kb on + strand, within ABZR87_RS19240 at 679.103 kb on + strand, within ABZR87_RS19240 at 679.104 kb on - strand, within ABZR87_RS19240 at 679.104 kb on - strand, within ABZR87_RS19240 at 679.177 kb on + strand, within ABZR87_RS19240 at 679.177 kb on + strand, within ABZR87_RS19240 at 679.177 kb on + strand, within ABZR87_RS19240 at 679.177 kb on + strand, within ABZR87_RS19240 at 679.178 kb on - strand, within ABZR87_RS19240 at 679.178 kb on - strand, within ABZR87_RS19240 at 679.178 kb on - strand, within ABZR87_RS19240 at 679.180 kb on + strand, within ABZR87_RS19240 at 679.181 kb on - strand, within ABZR87_RS19240 at 679.271 kb on - strand, within ABZR87_RS19240 at 679.468 kb on + strand at 679.468 kb on + strand at 679.468 kb on + strand at 679.469 kb on - strand at 679.469 kb on - strand at 679.480 kb on + strand at 679.480 kb on + strand at 679.481 kb on - strand at 679.481 kb on - strand at 679.585 kb on + strand at 679.586 kb on - strand at 679.586 kb on - strand at 679.586 kb on - strand at 679.851 kb on + strand at 679.851 kb on + strand at 679.852 kb on - strand at 679.906 kb on + strand at 679.907 kb on - strand at 680.028 kb on + strand, within ABZR87_RS19245 at 680.282 kb on + strand, within ABZR87_RS19245 at 680.283 kb on - strand, within ABZR87_RS19245 at 680.283 kb on - strand, within ABZR87_RS19245 at 680.339 kb on + strand, within ABZR87_RS19245 at 680.339 kb on + strand, within ABZR87_RS19245 at 680.339 kb on + strand, within ABZR87_RS19245 at 680.340 kb on - strand, within ABZR87_RS19245 at 680.340 kb on - strand, within ABZR87_RS19245 at 680.340 kb on - strand, within ABZR87_RS19245 at 680.367 kb on - strand, within ABZR87_RS19245 at 680.705 kb on - strand, within ABZR87_RS19245 at 680.705 kb on - strand, within ABZR87_RS19245 at 680.832 kb on - strand at 680.888 kb on + strand at 680.888 kb on + strand at 680.888 kb on + strand at 680.888 kb on + strand at 680.889 kb on - strand at 680.889 kb on - strand at 680.889 kb on - strand at 681.251 kb on + strand, within ABZR87_RS19250 at 681.252 kb on - strand, within ABZR87_RS19250 at 681.252 kb on - strand, within ABZR87_RS19250 at 681.287 kb on + strand, within ABZR87_RS19250 at 681.287 kb on + strand, within ABZR87_RS19250 at 681.287 kb on + strand, within ABZR87_RS19250 at 681.287 kb on + strand, within ABZR87_RS19250 at 681.288 kb on - strand, within ABZR87_RS19250 at 681.290 kb on + strand, within ABZR87_RS19250 at 681.290 kb on + strand, within ABZR87_RS19250 at 681.291 kb on - strand, within ABZR87_RS19250 at 681.891 kb on + strand, within ABZR87_RS19255
Per-strain Table
Position Strand Gene LocusTag Fraction root sample 5; outgrowth in LB remove 678,817 + ABZR87_RS19240 0.20 -1.0 678,817 + ABZR87_RS19240 0.20 +0.2 678,817 + ABZR87_RS19240 0.20 +0.0 678,818 - ABZR87_RS19240 0.20 +5.1 679,086 + ABZR87_RS19240 0.59 +0.0 679,087 - ABZR87_RS19240 0.60 -0.9 679,087 - ABZR87_RS19240 0.60 -2.3 679,103 + ABZR87_RS19240 0.62 +2.8 679,103 + ABZR87_RS19240 0.62 -1.7 679,104 - ABZR87_RS19240 0.62 +2.7 679,104 - ABZR87_RS19240 0.62 +0.2 679,177 + ABZR87_RS19240 0.73 -1.0 679,177 + ABZR87_RS19240 0.73 +1.1 679,177 + ABZR87_RS19240 0.73 -0.1 679,177 + ABZR87_RS19240 0.73 -2.3 679,178 - ABZR87_RS19240 0.73 -0.7 679,178 - ABZR87_RS19240 0.73 +2.1 679,178 - ABZR87_RS19240 0.73 -0.1 679,180 + ABZR87_RS19240 0.73 -0.1 679,181 - ABZR87_RS19240 0.73 -0.4 679,271 - ABZR87_RS19240 0.86 +2.3 679,468 + -0.2 679,468 + +1.7 679,468 + +0.6 679,469 - -1.6 679,469 - +1.7 679,480 + +0.6 679,480 + +0.2 679,481 - +0.1 679,481 - +2.2 679,585 + -1.7 679,586 - -0.7 679,586 - -0.3 679,586 - +0.8 679,851 + -0.0 679,851 + +0.1 679,852 - -1.4 679,906 + -1.9 679,907 - -1.3 680,028 + ABZR87_RS19245 0.19 -0.1 680,282 + ABZR87_RS19245 0.42 +0.6 680,283 - ABZR87_RS19245 0.42 -0.3 680,283 - ABZR87_RS19245 0.42 +3.6 680,339 + ABZR87_RS19245 0.48 +0.2 680,339 + ABZR87_RS19245 0.48 +0.9 680,339 + ABZR87_RS19245 0.48 +0.8 680,340 - ABZR87_RS19245 0.48 -2.3 680,340 - ABZR87_RS19245 0.48 -0.0 680,340 - ABZR87_RS19245 0.48 -0.3 680,367 - ABZR87_RS19245 0.50 -0.4 680,705 - ABZR87_RS19245 0.81 -0.3 680,705 - ABZR87_RS19245 0.81 +1.9 680,832 - -0.7 680,888 + +0.2 680,888 + +0.8 680,888 + +2.4 680,888 + -0.6 680,889 - -0.2 680,889 - +2.0 680,889 - -1.1 681,251 + ABZR87_RS19250 0.36 +1.2 681,252 - ABZR87_RS19250 0.36 +0.5 681,252 - ABZR87_RS19250 0.36 +1.9 681,287 + ABZR87_RS19250 0.41 +0.8 681,287 + ABZR87_RS19250 0.41 +0.2 681,287 + ABZR87_RS19250 0.41 -1.5 681,287 + ABZR87_RS19250 0.41 -0.1 681,288 - ABZR87_RS19250 0.41 -0.5 681,290 + ABZR87_RS19250 0.42 +1.1 681,290 + ABZR87_RS19250 0.42 +0.8 681,291 - ABZR87_RS19250 0.42 -1.6 681,891 + ABZR87_RS19255 0.17 +1.3
Or see this region's nucleotide sequence