Experiment: root sample 5; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS19060 and ABZR87_RS19065 are separated by 5 nucleotides ABZR87_RS19065 and ABZR87_RS19070 are separated by 23 nucleotides ABZR87_RS19070 and ABZR87_RS19075 are separated by 108 nucleotides ABZR87_RS19075 and ABZR87_RS19080 are separated by 101 nucleotides
ABZR87_RS19060: ABZR87_RS19060 - glyoxylate/hydroxypyruvate reductase A, at 638,405 to 639,331
_RS19060
ABZR87_RS19065: ABZR87_RS19065 - class II aldolase/adducin family protein, at 639,337 to 640,137
_RS19065
ABZR87_RS19070: ABZR87_RS19070 - MFS transporter, at 640,161 to 641,480
_RS19070
ABZR87_RS19075: ABZR87_RS19075 - hypothetical protein, at 641,589 to 641,762
_RS19075
ABZR87_RS19080: ABZR87_RS19080 - Zn-dependent hydrolase, at 641,864 to 643,087
_RS19080
Position (kb) 640
641
642 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 639.237 kb on + strand, within ABZR87_RS19060 at 639.238 kb on - strand, within ABZR87_RS19060 at 639.530 kb on + strand, within ABZR87_RS19065 at 639.530 kb on + strand, within ABZR87_RS19065 at 639.530 kb on + strand, within ABZR87_RS19065 at 639.665 kb on + strand, within ABZR87_RS19065 at 639.665 kb on + strand, within ABZR87_RS19065 at 639.665 kb on + strand, within ABZR87_RS19065 at 639.666 kb on - strand, within ABZR87_RS19065 at 639.666 kb on - strand, within ABZR87_RS19065 at 639.674 kb on + strand, within ABZR87_RS19065 at 639.675 kb on - strand, within ABZR87_RS19065 at 639.690 kb on - strand, within ABZR87_RS19065 at 639.690 kb on - strand, within ABZR87_RS19065 at 639.762 kb on + strand, within ABZR87_RS19065 at 639.762 kb on + strand, within ABZR87_RS19065 at 639.763 kb on - strand, within ABZR87_RS19065 at 639.768 kb on + strand, within ABZR87_RS19065 at 639.768 kb on + strand, within ABZR87_RS19065 at 639.768 kb on + strand, within ABZR87_RS19065 at 639.945 kb on - strand, within ABZR87_RS19065 at 640.047 kb on - strand, within ABZR87_RS19065 at 640.047 kb on - strand, within ABZR87_RS19065 at 640.156 kb on - strand at 640.156 kb on - strand at 640.156 kb on - strand at 640.156 kb on - strand at 640.294 kb on + strand, within ABZR87_RS19070 at 640.361 kb on - strand, within ABZR87_RS19070 at 640.432 kb on + strand, within ABZR87_RS19070 at 640.432 kb on + strand, within ABZR87_RS19070 at 640.432 kb on + strand, within ABZR87_RS19070 at 640.673 kb on - strand, within ABZR87_RS19070 at 641.381 kb on - strand at 641.381 kb on - strand at 641.386 kb on + strand at 641.386 kb on + strand at 641.386 kb on + strand at 641.386 kb on + strand at 641.386 kb on + strand at 641.386 kb on + strand at 641.386 kb on + strand at 641.386 kb on + strand at 641.387 kb on - strand at 641.387 kb on - strand at 641.387 kb on - strand at 641.389 kb on + strand at 641.389 kb on + strand at 641.390 kb on - strand at 641.395 kb on + strand at 641.395 kb on + strand at 641.396 kb on - strand at 641.396 kb on - strand at 641.396 kb on - strand at 641.588 kb on + strand at 641.588 kb on + strand at 641.588 kb on + strand at 641.589 kb on - strand at 641.589 kb on - strand at 641.589 kb on - strand at 641.589 kb on - strand at 641.699 kb on + strand, within ABZR87_RS19075 at 641.700 kb on - strand, within ABZR87_RS19075 at 641.700 kb on - strand, within ABZR87_RS19075 at 641.700 kb on - strand, within ABZR87_RS19075 at 641.745 kb on + strand at 641.770 kb on - strand at 641.770 kb on - strand at 641.810 kb on - strand at 641.810 kb on - strand at 641.810 kb on - strand at 642.146 kb on + strand, within ABZR87_RS19080 at 642.147 kb on - strand, within ABZR87_RS19080 at 642.256 kb on + strand, within ABZR87_RS19080 at 642.256 kb on + strand, within ABZR87_RS19080 at 642.257 kb on - strand, within ABZR87_RS19080 at 642.257 kb on - strand, within ABZR87_RS19080 at 642.257 kb on - strand, within ABZR87_RS19080 at 642.371 kb on + strand, within ABZR87_RS19080 at 642.413 kb on + strand, within ABZR87_RS19080 at 642.414 kb on - strand, within ABZR87_RS19080 at 642.414 kb on - strand, within ABZR87_RS19080 at 642.414 kb on - strand, within ABZR87_RS19080 at 642.427 kb on + strand, within ABZR87_RS19080
Per-strain Table
Position Strand Gene LocusTag Fraction root sample 5; outgrowth in LB remove 639,237 + ABZR87_RS19060 0.90 +0.0 639,238 - ABZR87_RS19060 0.90 -0.5 639,530 + ABZR87_RS19065 0.24 -1.1 639,530 + ABZR87_RS19065 0.24 -1.5 639,530 + ABZR87_RS19065 0.24 +0.0 639,665 + ABZR87_RS19065 0.41 -0.2 639,665 + ABZR87_RS19065 0.41 -1.8 639,665 + ABZR87_RS19065 0.41 -1.0 639,666 - ABZR87_RS19065 0.41 +0.4 639,666 - ABZR87_RS19065 0.41 -1.0 639,674 + ABZR87_RS19065 0.42 -1.2 639,675 - ABZR87_RS19065 0.42 -0.9 639,690 - ABZR87_RS19065 0.44 -0.6 639,690 - ABZR87_RS19065 0.44 -2.1 639,762 + ABZR87_RS19065 0.53 -0.0 639,762 + ABZR87_RS19065 0.53 -1.0 639,763 - ABZR87_RS19065 0.53 -0.3 639,768 + ABZR87_RS19065 0.54 -0.7 639,768 + ABZR87_RS19065 0.54 -0.5 639,768 + ABZR87_RS19065 0.54 -1.0 639,945 - ABZR87_RS19065 0.76 +0.2 640,047 - ABZR87_RS19065 0.89 -0.8 640,047 - ABZR87_RS19065 0.89 +0.5 640,156 - +0.0 640,156 - -1.3 640,156 - -1.0 640,156 - +0.1 640,294 + ABZR87_RS19070 0.10 -1.5 640,361 - ABZR87_RS19070 0.15 -1.2 640,432 + ABZR87_RS19070 0.21 -2.5 640,432 + ABZR87_RS19070 0.21 -0.4 640,432 + ABZR87_RS19070 0.21 -0.7 640,673 - ABZR87_RS19070 0.39 -0.2 641,381 - -1.6 641,381 - -0.4 641,386 + -0.9 641,386 + +0.5 641,386 + -0.1 641,386 + +0.3 641,386 + +1.1 641,386 + -1.0 641,386 + +1.0 641,386 + -0.6 641,387 - -1.6 641,387 - +0.4 641,387 - +0.7 641,389 + +3.1 641,389 + +0.5 641,390 - +0.3 641,395 + -0.6 641,395 + -1.6 641,396 - -0.8 641,396 - +1.5 641,396 - +0.1 641,588 + +0.3 641,588 + -0.1 641,588 + -0.1 641,589 - -0.3 641,589 - -0.5 641,589 - +0.2 641,589 - +0.6 641,699 + ABZR87_RS19075 0.63 -1.3 641,700 - ABZR87_RS19075 0.64 -1.0 641,700 - ABZR87_RS19075 0.64 -0.3 641,700 - ABZR87_RS19075 0.64 -0.3 641,745 + +1.7 641,770 - -0.2 641,770 - -0.5 641,810 - +0.2 641,810 - -1.3 641,810 - +0.3 642,146 + ABZR87_RS19080 0.23 +0.1 642,147 - ABZR87_RS19080 0.23 +3.0 642,256 + ABZR87_RS19080 0.32 +1.5 642,256 + ABZR87_RS19080 0.32 -1.4 642,257 - ABZR87_RS19080 0.32 -0.9 642,257 - ABZR87_RS19080 0.32 -0.2 642,257 - ABZR87_RS19080 0.32 -0.1 642,371 + ABZR87_RS19080 0.41 +3.6 642,413 + ABZR87_RS19080 0.45 -0.7 642,414 - ABZR87_RS19080 0.45 -0.2 642,414 - ABZR87_RS19080 0.45 -0.1 642,414 - ABZR87_RS19080 0.45 -0.3 642,427 + ABZR87_RS19080 0.46 -0.0
Or see this region's nucleotide sequence