Experiment: root sample 5; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS19005 and ABZR87_RS19010 are separated by 79 nucleotides ABZR87_RS19010 and ABZR87_RS19015 are separated by 301 nucleotides
ABZR87_RS19005: ABZR87_RS19005 - sensor domain-containing diguanylate cyclase, at 621,231 to 622,577
_RS19005
ABZR87_RS19010: ABZR87_RS19010 - acyloxyacyl hydrolase, at 622,657 to 623,220
_RS19010
ABZR87_RS19015: ABZR87_RS19015 - efflux transporter outer membrane subunit, at 623,522 to 625,027
_RS19015
Position (kb) 622
623
624 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 621.659 kb on + strand, within ABZR87_RS19005 at 621.659 kb on + strand, within ABZR87_RS19005 at 621.659 kb on + strand, within ABZR87_RS19005 at 621.660 kb on - strand, within ABZR87_RS19005 at 621.765 kb on + strand, within ABZR87_RS19005 at 621.765 kb on + strand, within ABZR87_RS19005 at 621.813 kb on + strand, within ABZR87_RS19005 at 621.813 kb on + strand, within ABZR87_RS19005 at 621.814 kb on - strand, within ABZR87_RS19005 at 621.814 kb on - strand, within ABZR87_RS19005 at 621.822 kb on - strand, within ABZR87_RS19005 at 621.822 kb on - strand, within ABZR87_RS19005 at 622.155 kb on + strand, within ABZR87_RS19005 at 622.155 kb on + strand, within ABZR87_RS19005 at 622.155 kb on + strand, within ABZR87_RS19005 at 622.155 kb on + strand, within ABZR87_RS19005 at 622.156 kb on - strand, within ABZR87_RS19005 at 622.156 kb on - strand, within ABZR87_RS19005 at 622.395 kb on + strand, within ABZR87_RS19005 at 622.396 kb on - strand, within ABZR87_RS19005 at 622.396 kb on - strand, within ABZR87_RS19005 at 622.452 kb on + strand at 622.452 kb on + strand at 622.452 kb on + strand at 622.452 kb on + strand at 622.452 kb on + strand at 622.452 kb on + strand at 622.453 kb on - strand at 622.453 kb on - strand at 622.453 kb on - strand at 622.506 kb on + strand at 622.506 kb on + strand at 622.506 kb on + strand at 622.506 kb on + strand at 622.507 kb on - strand at 622.583 kb on + strand at 622.667 kb on + strand at 622.668 kb on - strand at 622.676 kb on + strand at 622.676 kb on + strand at 622.676 kb on + strand at 622.676 kb on + strand at 622.677 kb on - strand at 622.677 kb on - strand at 622.677 kb on - strand at 622.745 kb on + strand, within ABZR87_RS19010 at 623.075 kb on + strand, within ABZR87_RS19010 at 623.076 kb on - strand, within ABZR87_RS19010 at 623.076 kb on - strand, within ABZR87_RS19010 at 623.108 kb on + strand, within ABZR87_RS19010 at 623.108 kb on + strand, within ABZR87_RS19010 at 623.429 kb on + strand at 623.429 kb on + strand at 623.429 kb on + strand at 623.430 kb on - strand at 623.430 kb on - strand at 623.430 kb on - strand at 623.430 kb on - strand at 623.430 kb on - strand at 623.430 kb on - strand at 623.430 kb on - strand at 623.430 kb on - strand at 623.431 kb on + strand at 623.432 kb on - strand at 623.441 kb on + strand at 623.442 kb on - strand at 623.632 kb on - strand at 623.632 kb on - strand at 623.632 kb on - strand at 623.673 kb on + strand, within ABZR87_RS19015 at 623.673 kb on + strand, within ABZR87_RS19015 at 623.674 kb on - strand, within ABZR87_RS19015 at 623.674 kb on - strand, within ABZR87_RS19015 at 623.866 kb on - strand, within ABZR87_RS19015 at 623.887 kb on - strand, within ABZR87_RS19015 at 624.052 kb on - strand, within ABZR87_RS19015
Per-strain Table
Position Strand Gene LocusTag Fraction root sample 5; outgrowth in LB remove 621,659 + ABZR87_RS19005 0.32 +2.2 621,659 + ABZR87_RS19005 0.32 +5.6 621,659 + ABZR87_RS19005 0.32 +1.3 621,660 - ABZR87_RS19005 0.32 +1.6 621,765 + ABZR87_RS19005 0.40 +3.4 621,765 + ABZR87_RS19005 0.40 +2.7 621,813 + ABZR87_RS19005 0.43 +3.3 621,813 + ABZR87_RS19005 0.43 +0.1 621,814 - ABZR87_RS19005 0.43 +1.6 621,814 - ABZR87_RS19005 0.43 +0.4 621,822 - ABZR87_RS19005 0.44 +2.7 621,822 - ABZR87_RS19005 0.44 +2.3 622,155 + ABZR87_RS19005 0.69 +1.9 622,155 + ABZR87_RS19005 0.69 +0.2 622,155 + ABZR87_RS19005 0.69 +2.4 622,155 + ABZR87_RS19005 0.69 +3.1 622,156 - ABZR87_RS19005 0.69 +2.7 622,156 - ABZR87_RS19005 0.69 +1.9 622,395 + ABZR87_RS19005 0.86 +2.7 622,396 - ABZR87_RS19005 0.86 +2.3 622,396 - ABZR87_RS19005 0.86 +1.9 622,452 + +0.9 622,452 + +3.2 622,452 + +1.2 622,452 + +2.2 622,452 + +0.7 622,452 + +2.0 622,453 - +1.7 622,453 - +1.5 622,453 - +1.9 622,506 + +1.1 622,506 + -0.8 622,506 + +1.8 622,506 + +1.2 622,507 - +1.7 622,583 + -0.5 622,667 + +1.5 622,668 - +2.3 622,676 + +0.1 622,676 + -0.9 622,676 + -0.3 622,676 + +0.9 622,677 - +0.6 622,677 - -2.0 622,677 - +1.6 622,745 + ABZR87_RS19010 0.16 +0.1 623,075 + ABZR87_RS19010 0.74 -0.4 623,076 - ABZR87_RS19010 0.74 +0.3 623,076 - ABZR87_RS19010 0.74 -0.2 623,108 + ABZR87_RS19010 0.80 -1.4 623,108 + ABZR87_RS19010 0.80 -0.9 623,429 + +0.3 623,429 + -1.4 623,429 + -1.3 623,430 - -0.2 623,430 - +0.8 623,430 - -0.2 623,430 - +0.1 623,430 - -2.1 623,430 - -0.4 623,430 - +1.7 623,430 - +0.1 623,431 + +0.7 623,432 - +0.2 623,441 + -0.1 623,442 - -0.4 623,632 - -1.3 623,632 - -1.6 623,632 - +0.9 623,673 + ABZR87_RS19015 0.10 +0.6 623,673 + ABZR87_RS19015 0.10 +2.2 623,674 - ABZR87_RS19015 0.10 +0.8 623,674 - ABZR87_RS19015 0.10 +0.5 623,866 - ABZR87_RS19015 0.23 -0.3 623,887 - ABZR87_RS19015 0.24 +0.9 624,052 - ABZR87_RS19015 0.35 +0.3
Or see this region's nucleotide sequence