Experiment: root sample 5; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS18835 and ABZR87_RS18840 overlap by 4 nucleotides ABZR87_RS18840 and ABZR87_RS18845 are separated by 15 nucleotides
ABZR87_RS18835: ABZR87_RS18835 - cytochrome d ubiquinol oxidase subunit II, at 578,422 to 579,453
_RS18835
ABZR87_RS18840: ABZR87_RS18840 - cytochrome ubiquinol oxidase subunit I, at 579,450 to 580,838
_RS18840
ABZR87_RS18845: ABZR87_RS18845 - GbsR/MarR family transcriptional regulator, at 580,854 to 581,414
_RS18845
Position (kb) 579
580
581 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 578.465 kb on + strand at 578.466 kb on - strand at 578.466 kb on - strand at 578.471 kb on + strand at 578.471 kb on + strand at 578.472 kb on - strand at 578.472 kb on - strand at 578.472 kb on - strand at 578.481 kb on - strand at 578.600 kb on + strand, within ABZR87_RS18835 at 579.020 kb on + strand, within ABZR87_RS18835 at 579.020 kb on + strand, within ABZR87_RS18835 at 579.020 kb on + strand, within ABZR87_RS18835 at 579.020 kb on + strand, within ABZR87_RS18835 at 579.020 kb on + strand, within ABZR87_RS18835 at 579.020 kb on + strand, within ABZR87_RS18835 at 579.020 kb on + strand, within ABZR87_RS18835 at 579.020 kb on + strand, within ABZR87_RS18835 at 579.020 kb on + strand, within ABZR87_RS18835 at 579.021 kb on - strand, within ABZR87_RS18835 at 579.021 kb on - strand, within ABZR87_RS18835 at 579.021 kb on - strand, within ABZR87_RS18835 at 579.021 kb on - strand, within ABZR87_RS18835 at 579.021 kb on - strand, within ABZR87_RS18835 at 579.021 kb on - strand, within ABZR87_RS18835 at 579.021 kb on - strand, within ABZR87_RS18835 at 579.021 kb on - strand, within ABZR87_RS18835 at 579.021 kb on - strand, within ABZR87_RS18835 at 579.022 kb on + strand, within ABZR87_RS18835 at 579.023 kb on - strand, within ABZR87_RS18835 at 579.023 kb on - strand, within ABZR87_RS18835 at 579.071 kb on + strand, within ABZR87_RS18835 at 579.071 kb on + strand, within ABZR87_RS18835 at 579.071 kb on + strand, within ABZR87_RS18835 at 579.072 kb on - strand, within ABZR87_RS18835 at 579.072 kb on - strand, within ABZR87_RS18835 at 579.072 kb on - strand, within ABZR87_RS18835 at 579.072 kb on - strand, within ABZR87_RS18835 at 579.072 kb on - strand, within ABZR87_RS18835 at 579.179 kb on + strand, within ABZR87_RS18835 at 579.180 kb on - strand, within ABZR87_RS18835 at 579.180 kb on - strand, within ABZR87_RS18835 at 579.180 kb on - strand, within ABZR87_RS18835 at 579.350 kb on + strand at 579.368 kb on + strand at 579.368 kb on + strand at 579.368 kb on + strand at 579.368 kb on + strand at 579.368 kb on + strand at 579.369 kb on - strand at 579.565 kb on + strand at 579.565 kb on + strand at 579.565 kb on + strand at 579.566 kb on - strand at 579.566 kb on - strand at 579.583 kb on + strand at 579.583 kb on + strand at 579.604 kb on + strand, within ABZR87_RS18840 at 579.604 kb on + strand, within ABZR87_RS18840 at 579.604 kb on + strand, within ABZR87_RS18840 at 579.612 kb on + strand, within ABZR87_RS18840 at 579.612 kb on + strand, within ABZR87_RS18840 at 579.612 kb on + strand, within ABZR87_RS18840 at 579.612 kb on + strand, within ABZR87_RS18840 at 579.613 kb on - strand, within ABZR87_RS18840 at 579.616 kb on + strand, within ABZR87_RS18840 at 579.617 kb on - strand, within ABZR87_RS18840 at 579.688 kb on + strand, within ABZR87_RS18840 at 579.689 kb on - strand, within ABZR87_RS18840 at 579.689 kb on - strand, within ABZR87_RS18840 at 579.724 kb on + strand, within ABZR87_RS18840 at 579.724 kb on + strand, within ABZR87_RS18840 at 579.724 kb on + strand, within ABZR87_RS18840 at 579.724 kb on + strand, within ABZR87_RS18840 at 579.724 kb on + strand, within ABZR87_RS18840 at 579.725 kb on - strand, within ABZR87_RS18840 at 579.725 kb on - strand, within ABZR87_RS18840 at 579.725 kb on - strand, within ABZR87_RS18840 at 579.725 kb on - strand, within ABZR87_RS18840 at 579.961 kb on + strand, within ABZR87_RS18840 at 579.961 kb on + strand, within ABZR87_RS18840 at 580.229 kb on - strand, within ABZR87_RS18840 at 580.367 kb on - strand, within ABZR87_RS18840 at 580.457 kb on + strand, within ABZR87_RS18840 at 580.458 kb on - strand, within ABZR87_RS18840 at 580.544 kb on - strand, within ABZR87_RS18840 at 580.565 kb on + strand, within ABZR87_RS18840 at 580.566 kb on - strand, within ABZR87_RS18840 at 580.566 kb on - strand, within ABZR87_RS18840 at 580.583 kb on + strand, within ABZR87_RS18840 at 580.583 kb on + strand, within ABZR87_RS18840 at 580.583 kb on + strand, within ABZR87_RS18840 at 580.584 kb on - strand, within ABZR87_RS18840 at 580.585 kb on + strand, within ABZR87_RS18840 at 580.586 kb on - strand, within ABZR87_RS18840 at 580.586 kb on - strand, within ABZR87_RS18840 at 580.681 kb on + strand, within ABZR87_RS18840 at 580.682 kb on - strand, within ABZR87_RS18840 at 580.790 kb on + strand at 580.791 kb on - strand at 580.791 kb on - strand at 580.855 kb on + strand at 580.855 kb on + strand at 580.856 kb on - strand at 580.856 kb on - strand at 580.910 kb on + strand, within ABZR87_RS18845 at 580.910 kb on + strand, within ABZR87_RS18845 at 580.910 kb on + strand, within ABZR87_RS18845 at 580.910 kb on + strand, within ABZR87_RS18845 at 580.910 kb on + strand, within ABZR87_RS18845 at 580.910 kb on + strand, within ABZR87_RS18845 at 580.910 kb on + strand, within ABZR87_RS18845 at 580.911 kb on - strand, within ABZR87_RS18845 at 580.911 kb on - strand, within ABZR87_RS18845 at 580.911 kb on - strand, within ABZR87_RS18845 at 580.911 kb on - strand, within ABZR87_RS18845 at 580.911 kb on - strand, within ABZR87_RS18845 at 581.008 kb on + strand, within ABZR87_RS18845 at 581.008 kb on + strand, within ABZR87_RS18845 at 581.008 kb on + strand, within ABZR87_RS18845 at 581.009 kb on - strand, within ABZR87_RS18845 at 581.009 kb on - strand, within ABZR87_RS18845 at 581.009 kb on - strand, within ABZR87_RS18845 at 581.009 kb on - strand, within ABZR87_RS18845 at 581.009 kb on - strand, within ABZR87_RS18845 at 581.323 kb on + strand, within ABZR87_RS18845 at 581.324 kb on - strand, within ABZR87_RS18845 at 581.456 kb on - strand at 581.533 kb on + strand at 581.533 kb on + strand at 581.534 kb on - strand at 581.534 kb on - strand at 581.534 kb on - strand at 581.575 kb on + strand at 581.685 kb on - strand at 581.685 kb on - strand at 581.691 kb on + strand at 581.691 kb on + strand at 581.691 kb on + strand at 581.692 kb on - strand at 581.789 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction root sample 5; outgrowth in LB remove 578,465 + +0.1 578,466 - +2.6 578,466 - +0.5 578,471 + -0.2 578,471 + +2.1 578,472 - +0.8 578,472 - +2.6 578,472 - +0.2 578,481 - +2.1 578,600 + ABZR87_RS18835 0.17 +1.4 579,020 + ABZR87_RS18835 0.58 -1.4 579,020 + ABZR87_RS18835 0.58 -0.9 579,020 + ABZR87_RS18835 0.58 +1.6 579,020 + ABZR87_RS18835 0.58 -0.4 579,020 + ABZR87_RS18835 0.58 +0.4 579,020 + ABZR87_RS18835 0.58 +0.2 579,020 + ABZR87_RS18835 0.58 -0.6 579,020 + ABZR87_RS18835 0.58 -0.9 579,020 + ABZR87_RS18835 0.58 +0.2 579,021 - ABZR87_RS18835 0.58 -0.1 579,021 - ABZR87_RS18835 0.58 -2.3 579,021 - ABZR87_RS18835 0.58 +2.7 579,021 - ABZR87_RS18835 0.58 -0.3 579,021 - ABZR87_RS18835 0.58 -0.7 579,021 - ABZR87_RS18835 0.58 -0.1 579,021 - ABZR87_RS18835 0.58 +1.1 579,021 - ABZR87_RS18835 0.58 +0.8 579,021 - ABZR87_RS18835 0.58 -1.4 579,022 + ABZR87_RS18835 0.58 -0.6 579,023 - ABZR87_RS18835 0.58 -0.2 579,023 - ABZR87_RS18835 0.58 -0.7 579,071 + ABZR87_RS18835 0.63 -1.5 579,071 + ABZR87_RS18835 0.63 -1.1 579,071 + ABZR87_RS18835 0.63 +0.1 579,072 - ABZR87_RS18835 0.63 +0.3 579,072 - ABZR87_RS18835 0.63 -0.2 579,072 - ABZR87_RS18835 0.63 -0.1 579,072 - ABZR87_RS18835 0.63 +0.8 579,072 - ABZR87_RS18835 0.63 -0.9 579,179 + ABZR87_RS18835 0.73 -0.7 579,180 - ABZR87_RS18835 0.73 +0.8 579,180 - ABZR87_RS18835 0.73 +1.9 579,180 - ABZR87_RS18835 0.73 -0.7 579,350 + +0.1 579,368 + +1.1 579,368 + -1.0 579,368 + -1.9 579,368 + -1.0 579,368 + -0.5 579,369 - +0.2 579,565 + +1.2 579,565 + +2.7 579,565 + +2.8 579,566 - +0.8 579,566 - -0.0 579,583 + +2.1 579,583 + -1.2 579,604 + ABZR87_RS18840 0.11 +0.2 579,604 + ABZR87_RS18840 0.11 -0.6 579,604 + ABZR87_RS18840 0.11 +1.0 579,612 + ABZR87_RS18840 0.12 -0.5 579,612 + ABZR87_RS18840 0.12 -0.7 579,612 + ABZR87_RS18840 0.12 -0.8 579,612 + ABZR87_RS18840 0.12 -3.0 579,613 - ABZR87_RS18840 0.12 -0.6 579,616 + ABZR87_RS18840 0.12 +0.6 579,617 - ABZR87_RS18840 0.12 -0.4 579,688 + ABZR87_RS18840 0.17 +1.5 579,689 - ABZR87_RS18840 0.17 -1.5 579,689 - ABZR87_RS18840 0.17 +0.5 579,724 + ABZR87_RS18840 0.20 +0.6 579,724 + ABZR87_RS18840 0.20 -0.1 579,724 + ABZR87_RS18840 0.20 -0.8 579,724 + ABZR87_RS18840 0.20 -2.3 579,724 + ABZR87_RS18840 0.20 +2.3 579,725 - ABZR87_RS18840 0.20 +0.8 579,725 - ABZR87_RS18840 0.20 +2.2 579,725 - ABZR87_RS18840 0.20 +1.3 579,725 - ABZR87_RS18840 0.20 +2.3 579,961 + ABZR87_RS18840 0.37 +0.8 579,961 + ABZR87_RS18840 0.37 +0.4 580,229 - ABZR87_RS18840 0.56 -0.6 580,367 - ABZR87_RS18840 0.66 -1.8 580,457 + ABZR87_RS18840 0.72 -0.6 580,458 - ABZR87_RS18840 0.73 +1.1 580,544 - ABZR87_RS18840 0.79 -0.8 580,565 + ABZR87_RS18840 0.80 -0.1 580,566 - ABZR87_RS18840 0.80 -1.7 580,566 - ABZR87_RS18840 0.80 -0.3 580,583 + ABZR87_RS18840 0.82 +0.0 580,583 + ABZR87_RS18840 0.82 -0.4 580,583 + ABZR87_RS18840 0.82 +1.0 580,584 - ABZR87_RS18840 0.82 +1.9 580,585 + ABZR87_RS18840 0.82 -2.4 580,586 - ABZR87_RS18840 0.82 +0.5 580,586 - ABZR87_RS18840 0.82 -1.4 580,681 + ABZR87_RS18840 0.89 -0.2 580,682 - ABZR87_RS18840 0.89 -2.2 580,790 + -1.9 580,791 - +0.0 580,791 - -0.4 580,855 + -1.7 580,855 + -0.7 580,856 - +1.4 580,856 - -0.0 580,910 + ABZR87_RS18845 0.10 -1.5 580,910 + ABZR87_RS18845 0.10 +0.4 580,910 + ABZR87_RS18845 0.10 -1.1 580,910 + ABZR87_RS18845 0.10 -0.0 580,910 + ABZR87_RS18845 0.10 +1.1 580,910 + ABZR87_RS18845 0.10 -2.0 580,910 + ABZR87_RS18845 0.10 -1.6 580,911 - ABZR87_RS18845 0.10 +0.3 580,911 - ABZR87_RS18845 0.10 +1.6 580,911 - ABZR87_RS18845 0.10 -0.5 580,911 - ABZR87_RS18845 0.10 +0.4 580,911 - ABZR87_RS18845 0.10 -0.8 581,008 + ABZR87_RS18845 0.27 +0.1 581,008 + ABZR87_RS18845 0.27 -0.2 581,008 + ABZR87_RS18845 0.27 -1.6 581,009 - ABZR87_RS18845 0.28 +0.1 581,009 - ABZR87_RS18845 0.28 +0.0 581,009 - ABZR87_RS18845 0.28 -0.4 581,009 - ABZR87_RS18845 0.28 -0.5 581,009 - ABZR87_RS18845 0.28 -0.2 581,323 + ABZR87_RS18845 0.84 -1.1 581,324 - ABZR87_RS18845 0.84 +2.2 581,456 - -0.1 581,533 + -2.0 581,533 + -0.7 581,534 - +1.4 581,534 - +1.1 581,534 - +0.2 581,575 + -0.5 581,685 - +2.3 581,685 - +2.7 581,691 + -1.0 581,691 + +0.1 581,691 + +0.7 581,692 - +4.1 581,789 - +1.4
Or see this region's nucleotide sequence