Experiment: root sample 5; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS18725 and ABZR87_RS18730 overlap by 4 nucleotides ABZR87_RS18730 and ABZR87_RS18735 are separated by 546 nucleotides
ABZR87_RS18725: ABZR87_RS18725 - sialidase family protein, at 553,793 to 555,046
_RS18725
ABZR87_RS18730: ABZR87_RS18730 - redoxin domain-containing protein, at 555,043 to 555,549
_RS18730
ABZR87_RS18735: ABZR87_RS18735 - sulfite exporter TauE/SafE family protein, at 556,096 to 556,854
_RS18735
Position (kb) 555
556 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 554.057 kb on + strand, within ABZR87_RS18725 at 554.057 kb on + strand, within ABZR87_RS18725 at 554.057 kb on + strand, within ABZR87_RS18725 at 554.057 kb on + strand, within ABZR87_RS18725 at 554.057 kb on + strand, within ABZR87_RS18725 at 554.057 kb on + strand, within ABZR87_RS18725 at 554.058 kb on - strand, within ABZR87_RS18725 at 554.058 kb on - strand, within ABZR87_RS18725 at 554.058 kb on - strand, within ABZR87_RS18725 at 554.111 kb on + strand, within ABZR87_RS18725 at 554.111 kb on + strand, within ABZR87_RS18725 at 554.111 kb on + strand, within ABZR87_RS18725 at 554.111 kb on + strand, within ABZR87_RS18725 at 554.111 kb on + strand, within ABZR87_RS18725 at 554.111 kb on + strand, within ABZR87_RS18725 at 554.111 kb on + strand, within ABZR87_RS18725 at 554.111 kb on + strand, within ABZR87_RS18725 at 554.111 kb on + strand, within ABZR87_RS18725 at 554.111 kb on + strand, within ABZR87_RS18725 at 554.112 kb on - strand, within ABZR87_RS18725 at 554.112 kb on - strand, within ABZR87_RS18725 at 554.112 kb on - strand, within ABZR87_RS18725 at 554.112 kb on - strand, within ABZR87_RS18725 at 554.112 kb on - strand, within ABZR87_RS18725 at 554.112 kb on - strand, within ABZR87_RS18725 at 554.144 kb on + strand, within ABZR87_RS18725 at 554.144 kb on + strand, within ABZR87_RS18725 at 554.144 kb on + strand, within ABZR87_RS18725 at 554.337 kb on - strand, within ABZR87_RS18725 at 554.354 kb on + strand, within ABZR87_RS18725 at 554.354 kb on + strand, within ABZR87_RS18725 at 554.354 kb on + strand, within ABZR87_RS18725 at 554.355 kb on - strand, within ABZR87_RS18725 at 554.357 kb on + strand, within ABZR87_RS18725 at 554.357 kb on + strand, within ABZR87_RS18725 at 554.357 kb on + strand, within ABZR87_RS18725 at 554.357 kb on + strand, within ABZR87_RS18725 at 554.357 kb on + strand, within ABZR87_RS18725 at 554.357 kb on + strand, within ABZR87_RS18725 at 554.358 kb on - strand, within ABZR87_RS18725 at 554.358 kb on - strand, within ABZR87_RS18725 at 554.358 kb on - strand, within ABZR87_RS18725 at 554.358 kb on - strand, within ABZR87_RS18725 at 554.358 kb on - strand, within ABZR87_RS18725 at 554.536 kb on + strand, within ABZR87_RS18725 at 554.537 kb on - strand, within ABZR87_RS18725 at 554.954 kb on + strand at 554.954 kb on + strand at 554.954 kb on + strand at 554.954 kb on + strand at 554.954 kb on + strand at 554.954 kb on + strand at 554.955 kb on - strand at 554.955 kb on - strand at 554.955 kb on - strand at 554.955 kb on - strand at 555.077 kb on + strand at 555.077 kb on + strand at 555.078 kb on - strand at 555.220 kb on + strand, within ABZR87_RS18730 at 555.221 kb on - strand, within ABZR87_RS18730 at 555.388 kb on + strand, within ABZR87_RS18730 at 555.389 kb on - strand, within ABZR87_RS18730 at 555.462 kb on + strand, within ABZR87_RS18730 at 555.462 kb on + strand, within ABZR87_RS18730 at 555.486 kb on + strand, within ABZR87_RS18730 at 555.486 kb on + strand, within ABZR87_RS18730 at 555.524 kb on + strand at 555.524 kb on + strand at 555.524 kb on + strand at 555.525 kb on - strand at 555.525 kb on - strand at 555.548 kb on - strand at 555.548 kb on - strand at 555.586 kb on - strand at 555.608 kb on + strand at 555.608 kb on + strand at 555.608 kb on + strand at 555.608 kb on + strand at 555.609 kb on - strand at 555.609 kb on - strand at 555.610 kb on + strand at 555.610 kb on + strand at 555.611 kb on - strand at 555.695 kb on + strand at 555.696 kb on - strand at 555.754 kb on + strand at 555.755 kb on - strand at 555.790 kb on + strand at 555.831 kb on + strand at 555.831 kb on + strand at 555.831 kb on + strand at 555.832 kb on - strand at 555.832 kb on - strand at 555.921 kb on + strand at 555.921 kb on + strand at 555.921 kb on + strand at 555.921 kb on + strand at 555.922 kb on - strand at 555.922 kb on - strand at 555.922 kb on - strand at 555.922 kb on - strand at 555.922 kb on - strand at 555.945 kb on - strand at 555.945 kb on - strand at 556.013 kb on + strand at 556.013 kb on + strand at 556.013 kb on + strand at 556.014 kb on - strand at 556.014 kb on - strand at 556.169 kb on + strand at 556.212 kb on - strand, within ABZR87_RS18735 at 556.410 kb on - strand, within ABZR87_RS18735 at 556.418 kb on + strand, within ABZR87_RS18735 at 556.418 kb on + strand, within ABZR87_RS18735 at 556.418 kb on + strand, within ABZR87_RS18735 at 556.418 kb on + strand, within ABZR87_RS18735 at 556.418 kb on + strand, within ABZR87_RS18735 at 556.418 kb on + strand, within ABZR87_RS18735 at 556.419 kb on - strand, within ABZR87_RS18735 at 556.419 kb on - strand, within ABZR87_RS18735 at 556.419 kb on - strand, within ABZR87_RS18735 at 556.419 kb on - strand, within ABZR87_RS18735 at 556.419 kb on - strand, within ABZR87_RS18735 at 556.419 kb on - strand, within ABZR87_RS18735 at 556.419 kb on - strand, within ABZR87_RS18735 at 556.419 kb on - strand, within ABZR87_RS18735
Per-strain Table
Position Strand Gene LocusTag Fraction root sample 5; outgrowth in LB remove 554,057 + ABZR87_RS18725 0.21 -0.2 554,057 + ABZR87_RS18725 0.21 -0.7 554,057 + ABZR87_RS18725 0.21 +3.9 554,057 + ABZR87_RS18725 0.21 +1.3 554,057 + ABZR87_RS18725 0.21 +2.1 554,057 + ABZR87_RS18725 0.21 -0.6 554,058 - ABZR87_RS18725 0.21 -1.4 554,058 - ABZR87_RS18725 0.21 +0.9 554,058 - ABZR87_RS18725 0.21 -0.8 554,111 + ABZR87_RS18725 0.25 -0.2 554,111 + ABZR87_RS18725 0.25 -0.8 554,111 + ABZR87_RS18725 0.25 -0.0 554,111 + ABZR87_RS18725 0.25 +0.5 554,111 + ABZR87_RS18725 0.25 -1.5 554,111 + ABZR87_RS18725 0.25 -1.6 554,111 + ABZR87_RS18725 0.25 +0.6 554,111 + ABZR87_RS18725 0.25 -2.2 554,111 + ABZR87_RS18725 0.25 -2.2 554,111 + ABZR87_RS18725 0.25 +0.1 554,112 - ABZR87_RS18725 0.25 -1.0 554,112 - ABZR87_RS18725 0.25 -0.2 554,112 - ABZR87_RS18725 0.25 +0.9 554,112 - ABZR87_RS18725 0.25 -0.1 554,112 - ABZR87_RS18725 0.25 +1.0 554,112 - ABZR87_RS18725 0.25 +1.2 554,144 + ABZR87_RS18725 0.28 -1.3 554,144 + ABZR87_RS18725 0.28 -1.4 554,144 + ABZR87_RS18725 0.28 +0.7 554,337 - ABZR87_RS18725 0.43 +1.5 554,354 + ABZR87_RS18725 0.45 +0.5 554,354 + ABZR87_RS18725 0.45 +0.4 554,354 + ABZR87_RS18725 0.45 -1.2 554,355 - ABZR87_RS18725 0.45 +0.2 554,357 + ABZR87_RS18725 0.45 +0.0 554,357 + ABZR87_RS18725 0.45 -1.5 554,357 + ABZR87_RS18725 0.45 -0.2 554,357 + ABZR87_RS18725 0.45 +0.1 554,357 + ABZR87_RS18725 0.45 +1.1 554,357 + ABZR87_RS18725 0.45 +0.4 554,358 - ABZR87_RS18725 0.45 +0.2 554,358 - ABZR87_RS18725 0.45 -0.1 554,358 - ABZR87_RS18725 0.45 +0.0 554,358 - ABZR87_RS18725 0.45 -0.3 554,358 - ABZR87_RS18725 0.45 +1.6 554,536 + ABZR87_RS18725 0.59 -0.7 554,537 - ABZR87_RS18725 0.59 -2.1 554,954 + -0.6 554,954 + -0.7 554,954 + +0.9 554,954 + -0.3 554,954 + +1.9 554,954 + -1.5 554,955 - +0.4 554,955 - -0.5 554,955 - +1.8 554,955 - -0.7 555,077 + +1.0 555,077 + +2.1 555,078 - +0.5 555,220 + ABZR87_RS18730 0.35 -0.3 555,221 - ABZR87_RS18730 0.35 -1.7 555,388 + ABZR87_RS18730 0.68 +0.9 555,389 - ABZR87_RS18730 0.68 -1.2 555,462 + ABZR87_RS18730 0.83 +0.8 555,462 + ABZR87_RS18730 0.83 +1.6 555,486 + ABZR87_RS18730 0.87 +2.8 555,486 + ABZR87_RS18730 0.87 +0.0 555,524 + -2.1 555,524 + -0.2 555,524 + -0.1 555,525 - +1.9 555,525 - -0.8 555,548 - +0.9 555,548 - -1.4 555,586 - +2.0 555,608 + +1.6 555,608 + +0.7 555,608 + -0.0 555,608 + +1.7 555,609 - -0.4 555,609 - +0.0 555,610 + +0.1 555,610 + +1.1 555,611 - -2.0 555,695 + +1.0 555,696 - +0.9 555,754 + -0.6 555,755 - -0.7 555,790 + -0.1 555,831 + -0.6 555,831 + +0.3 555,831 + -0.6 555,832 - -0.9 555,832 - -0.8 555,921 + +1.4 555,921 + -0.2 555,921 + -1.5 555,921 + +0.6 555,922 - -1.4 555,922 - -1.2 555,922 - -2.1 555,922 - +0.5 555,922 - +1.0 555,945 - +0.2 555,945 - -1.8 556,013 + +0.3 556,013 + -0.7 556,013 + +1.7 556,014 - -2.5 556,014 - +0.6 556,169 + +0.4 556,212 - ABZR87_RS18735 0.15 -1.2 556,410 - ABZR87_RS18735 0.41 +0.3 556,418 + ABZR87_RS18735 0.42 -0.8 556,418 + ABZR87_RS18735 0.42 -0.8 556,418 + ABZR87_RS18735 0.42 -0.2 556,418 + ABZR87_RS18735 0.42 -0.7 556,418 + ABZR87_RS18735 0.42 -1.9 556,418 + ABZR87_RS18735 0.42 +0.3 556,419 - ABZR87_RS18735 0.43 +1.4 556,419 - ABZR87_RS18735 0.43 +0.8 556,419 - ABZR87_RS18735 0.43 -0.0 556,419 - ABZR87_RS18735 0.43 +0.6 556,419 - ABZR87_RS18735 0.43 +1.2 556,419 - ABZR87_RS18735 0.43 -0.3 556,419 - ABZR87_RS18735 0.43 -1.3 556,419 - ABZR87_RS18735 0.43 +1.5
Or see this region's nucleotide sequence