Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS18680

Experiment: root sample 5; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS18670 and ABZR87_RS18675 are separated by 34 nucleotidesABZR87_RS18675 and ABZR87_RS18680 overlap by 4 nucleotidesABZR87_RS18680 and ABZR87_RS18685 overlap by 4 nucleotidesABZR87_RS18685 and ABZR87_RS18690 are separated by 61 nucleotides ABZR87_RS18670: ABZR87_RS18670 - ABC transporter ATP-binding protein, at 541,978 to 543,096 _RS18670 ABZR87_RS18675: ABZR87_RS18675 - HAD family phosphatase, at 543,131 to 543,847 _RS18675 ABZR87_RS18680: ABZR87_RS18680 - carbohydrate ABC transporter permease, at 543,844 to 544,665 _RS18680 ABZR87_RS18685: ABZR87_RS18685 - sugar ABC transporter permease, at 544,662 to 545,582 _RS18685 ABZR87_RS18690: ABZR87_RS18690 - sugar ABC transporter substrate-binding protein, at 545,644 to 546,849 _RS18690 Position (kb) 543 544 545Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 542.846 kb on + strand, within ABZR87_RS18670at 542.884 kb on + strand, within ABZR87_RS18670at 543.059 kb on + strandat 543.060 kb on - strandat 543.188 kb on - strandat 543.266 kb on + strand, within ABZR87_RS18675at 543.266 kb on + strand, within ABZR87_RS18675at 543.267 kb on - strand, within ABZR87_RS18675at 543.370 kb on - strand, within ABZR87_RS18675at 543.406 kb on - strand, within ABZR87_RS18675at 543.412 kb on + strand, within ABZR87_RS18675at 543.412 kb on + strand, within ABZR87_RS18675at 543.413 kb on - strand, within ABZR87_RS18675at 543.414 kb on + strand, within ABZR87_RS18675at 543.414 kb on + strand, within ABZR87_RS18675at 543.414 kb on + strand, within ABZR87_RS18675at 543.414 kb on + strand, within ABZR87_RS18675at 543.414 kb on + strand, within ABZR87_RS18675at 543.414 kb on + strand, within ABZR87_RS18675at 543.414 kb on + strand, within ABZR87_RS18675at 543.414 kb on + strand, within ABZR87_RS18675at 543.414 kb on + strand, within ABZR87_RS18675at 543.415 kb on - strand, within ABZR87_RS18675at 543.415 kb on - strand, within ABZR87_RS18675at 543.415 kb on - strand, within ABZR87_RS18675at 543.415 kb on - strand, within ABZR87_RS18675at 543.415 kb on - strand, within ABZR87_RS18675at 543.433 kb on + strand, within ABZR87_RS18675at 543.433 kb on + strand, within ABZR87_RS18675at 543.433 kb on + strand, within ABZR87_RS18675at 543.434 kb on - strand, within ABZR87_RS18675at 543.434 kb on - strand, within ABZR87_RS18675at 543.717 kb on - strand, within ABZR87_RS18675at 543.717 kb on - strand, within ABZR87_RS18675at 543.825 kb on + strandat 543.977 kb on + strand, within ABZR87_RS18680at 544.115 kb on + strand, within ABZR87_RS18680at 544.115 kb on + strand, within ABZR87_RS18680at 544.190 kb on + strand, within ABZR87_RS18680at 544.191 kb on - strand, within ABZR87_RS18680at 544.191 kb on - strand, within ABZR87_RS18680at 544.191 kb on - strand, within ABZR87_RS18680at 544.292 kb on + strand, within ABZR87_RS18680at 544.293 kb on - strand, within ABZR87_RS18680at 544.536 kb on + strand, within ABZR87_RS18680at 544.537 kb on - strand, within ABZR87_RS18680at 544.537 kb on - strand, within ABZR87_RS18680at 544.538 kb on + strand, within ABZR87_RS18680at 544.538 kb on + strand, within ABZR87_RS18680at 544.538 kb on + strand, within ABZR87_RS18680at 544.538 kb on + strand, within ABZR87_RS18680at 544.539 kb on - strand, within ABZR87_RS18680at 544.539 kb on - strand, within ABZR87_RS18680at 544.539 kb on - strand, within ABZR87_RS18680at 544.539 kb on - strand, within ABZR87_RS18680at 544.539 kb on - strand, within ABZR87_RS18680at 544.807 kb on + strand, within ABZR87_RS18685at 544.808 kb on - strand, within ABZR87_RS18685at 545.153 kb on - strand, within ABZR87_RS18685at 545.153 kb on - strand, within ABZR87_RS18685at 545.366 kb on - strand, within ABZR87_RS18685at 545.381 kb on - strand, within ABZR87_RS18685at 545.428 kb on + strand, within ABZR87_RS18685at 545.429 kb on - strand, within ABZR87_RS18685at 545.446 kb on + strand, within ABZR87_RS18685at 545.447 kb on - strand, within ABZR87_RS18685at 545.447 kb on - strand, within ABZR87_RS18685at 545.551 kb on - strandat 545.551 kb on - strandat 545.604 kb on + strandat 545.604 kb on + strandat 545.604 kb on + strandat 545.604 kb on + strandat 545.604 kb on + strandat 545.604 kb on + strandat 545.604 kb on + strandat 545.604 kb on + strandat 545.605 kb on - strandat 545.605 kb on - strandat 545.605 kb on - strandat 545.605 kb on - strandat 545.605 kb on - strandat 545.605 kb on - strandat 545.605 kb on - strandat 545.605 kb on - strandat 545.605 kb on - strandat 545.605 kb on - strandat 545.605 kb on - strandat 545.605 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction root sample 5; outgrowth in LB
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542,846 + ABZR87_RS18670 0.78 +0.7
542,884 + ABZR87_RS18670 0.81 +0.1
543,059 + +0.7
543,060 - +0.5
543,188 - -0.1
543,266 + ABZR87_RS18675 0.19 -0.2
543,266 + ABZR87_RS18675 0.19 +1.1
543,267 - ABZR87_RS18675 0.19 +0.6
543,370 - ABZR87_RS18675 0.33 +1.3
543,406 - ABZR87_RS18675 0.38 -1.0
543,412 + ABZR87_RS18675 0.39 -0.3
543,412 + ABZR87_RS18675 0.39 +1.3
543,413 - ABZR87_RS18675 0.39 -0.3
543,414 + ABZR87_RS18675 0.39 -1.2
543,414 + ABZR87_RS18675 0.39 -1.7
543,414 + ABZR87_RS18675 0.39 -0.1
543,414 + ABZR87_RS18675 0.39 +1.1
543,414 + ABZR87_RS18675 0.39 +0.0
543,414 + ABZR87_RS18675 0.39 +0.2
543,414 + ABZR87_RS18675 0.39 -1.5
543,414 + ABZR87_RS18675 0.39 +1.2
543,414 + ABZR87_RS18675 0.39 -1.3
543,415 - ABZR87_RS18675 0.40 +1.7
543,415 - ABZR87_RS18675 0.40 +2.0
543,415 - ABZR87_RS18675 0.40 -1.6
543,415 - ABZR87_RS18675 0.40 -0.6
543,415 - ABZR87_RS18675 0.40 +0.3
543,433 + ABZR87_RS18675 0.42 -0.4
543,433 + ABZR87_RS18675 0.42 +1.9
543,433 + ABZR87_RS18675 0.42 +1.0
543,434 - ABZR87_RS18675 0.42 +2.2
543,434 - ABZR87_RS18675 0.42 +0.1
543,717 - ABZR87_RS18675 0.82 +0.4
543,717 - ABZR87_RS18675 0.82 +1.7
543,825 + -1.4
543,977 + ABZR87_RS18680 0.16 -0.8
544,115 + ABZR87_RS18680 0.33 -2.3
544,115 + ABZR87_RS18680 0.33 +1.9
544,190 + ABZR87_RS18680 0.42 +0.9
544,191 - ABZR87_RS18680 0.42 +0.2
544,191 - ABZR87_RS18680 0.42 -0.6
544,191 - ABZR87_RS18680 0.42 +1.5
544,292 + ABZR87_RS18680 0.55 -0.3
544,293 - ABZR87_RS18680 0.55 -1.2
544,536 + ABZR87_RS18680 0.84 -0.8
544,537 - ABZR87_RS18680 0.84 +1.8
544,537 - ABZR87_RS18680 0.84 -0.2
544,538 + ABZR87_RS18680 0.84 +0.2
544,538 + ABZR87_RS18680 0.84 -0.7
544,538 + ABZR87_RS18680 0.84 -1.3
544,538 + ABZR87_RS18680 0.84 -1.2
544,539 - ABZR87_RS18680 0.85 -0.5
544,539 - ABZR87_RS18680 0.85 +0.5
544,539 - ABZR87_RS18680 0.85 -1.0
544,539 - ABZR87_RS18680 0.85 +0.8
544,539 - ABZR87_RS18680 0.85 -1.2
544,807 + ABZR87_RS18685 0.16 -1.0
544,808 - ABZR87_RS18685 0.16 -0.4
545,153 - ABZR87_RS18685 0.53 -1.6
545,153 - ABZR87_RS18685 0.53 +1.2
545,366 - ABZR87_RS18685 0.76 +0.3
545,381 - ABZR87_RS18685 0.78 -0.3
545,428 + ABZR87_RS18685 0.83 -1.8
545,429 - ABZR87_RS18685 0.83 -0.1
545,446 + ABZR87_RS18685 0.85 +0.7
545,447 - ABZR87_RS18685 0.85 +0.4
545,447 - ABZR87_RS18685 0.85 -0.4
545,551 - -0.2
545,551 - -0.3
545,604 + +1.9
545,604 + +0.6
545,604 + +0.2
545,604 + -1.0
545,604 + -1.4
545,604 + -1.4
545,604 + -1.6
545,604 + -2.4
545,605 - +1.4
545,605 - +0.9
545,605 - -0.7
545,605 - -0.6
545,605 - -0.1
545,605 - +3.9
545,605 - +0.5
545,605 - -0.6
545,605 - -0.5
545,605 - -0.6
545,605 - -1.2
545,605 - +0.5

Or see this region's nucleotide sequence