Experiment: root sample 5; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS18625 and ABZR87_RS18630 are separated by 101 nucleotides ABZR87_RS18630 and ABZR87_RS18635 are separated by 190 nucleotides
ABZR87_RS18625: ABZR87_RS18625 - sensor domain-containing diguanylate cyclase, at 530,688 to 531,734
_RS18625
ABZR87_RS18630: ABZR87_RS18630 - class II fumarate hydratase, at 531,836 to 533,221
_RS18630
ABZR87_RS18635: ABZR87_RS18635 - multidrug transporter subunit MdtD, at 533,412 to 534,842
_RS18635
Position (kb) 531
532
533
534 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 530.924 kb on + strand, within ABZR87_RS18625 at 531.046 kb on + strand, within ABZR87_RS18625 at 531.046 kb on + strand, within ABZR87_RS18625 at 531.046 kb on + strand, within ABZR87_RS18625 at 531.046 kb on + strand, within ABZR87_RS18625 at 531.047 kb on - strand, within ABZR87_RS18625 at 531.050 kb on + strand, within ABZR87_RS18625 at 531.051 kb on - strand, within ABZR87_RS18625 at 531.353 kb on + strand, within ABZR87_RS18625 at 531.364 kb on + strand, within ABZR87_RS18625 at 531.397 kb on + strand, within ABZR87_RS18625 at 531.397 kb on + strand, within ABZR87_RS18625 at 531.397 kb on + strand, within ABZR87_RS18625 at 531.398 kb on - strand, within ABZR87_RS18625 at 531.398 kb on - strand, within ABZR87_RS18625 at 531.398 kb on - strand, within ABZR87_RS18625 at 531.398 kb on - strand, within ABZR87_RS18625 at 531.398 kb on - strand, within ABZR87_RS18625 at 531.398 kb on - strand, within ABZR87_RS18625 at 531.408 kb on - strand, within ABZR87_RS18625 at 531.838 kb on - strand at 531.894 kb on + strand at 531.895 kb on - strand at 531.895 kb on - strand at 531.973 kb on - strand at 532.125 kb on + strand, within ABZR87_RS18630 at 532.126 kb on - strand, within ABZR87_RS18630 at 532.614 kb on + strand, within ABZR87_RS18630 at 533.263 kb on + strand at 533.263 kb on + strand at 533.265 kb on + strand at 533.265 kb on + strand at 533.266 kb on - strand at 533.295 kb on - strand at 533.587 kb on - strand, within ABZR87_RS18635
Per-strain Table
Position Strand Gene LocusTag Fraction root sample 5; outgrowth in LB remove 530,924 + ABZR87_RS18625 0.23 +0.6 531,046 + ABZR87_RS18625 0.34 -0.5 531,046 + ABZR87_RS18625 0.34 -1.0 531,046 + ABZR87_RS18625 0.34 +0.4 531,046 + ABZR87_RS18625 0.34 -1.4 531,047 - ABZR87_RS18625 0.34 -1.0 531,050 + ABZR87_RS18625 0.35 +2.9 531,051 - ABZR87_RS18625 0.35 -0.3 531,353 + ABZR87_RS18625 0.64 -1.4 531,364 + ABZR87_RS18625 0.65 +2.3 531,397 + ABZR87_RS18625 0.68 +0.1 531,397 + ABZR87_RS18625 0.68 +2.8 531,397 + ABZR87_RS18625 0.68 +1.1 531,398 - ABZR87_RS18625 0.68 +0.4 531,398 - ABZR87_RS18625 0.68 +2.1 531,398 - ABZR87_RS18625 0.68 -0.8 531,398 - ABZR87_RS18625 0.68 -0.5 531,398 - ABZR87_RS18625 0.68 -2.5 531,398 - ABZR87_RS18625 0.68 -1.2 531,408 - ABZR87_RS18625 0.69 -0.4 531,838 - +2.2 531,894 + +1.1 531,895 - +0.3 531,895 - +0.3 531,973 - -0.2 532,125 + ABZR87_RS18630 0.21 +1.3 532,126 - ABZR87_RS18630 0.21 +0.7 532,614 + ABZR87_RS18630 0.56 -2.2 533,263 + +0.8 533,263 + +0.0 533,265 + -1.4 533,265 + -1.1 533,266 - -0.6 533,295 - -1.5 533,587 - ABZR87_RS18635 0.12 +0.8
Or see this region's nucleotide sequence