Experiment: root sample 5; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS18430 and ABZR87_RS18435 are separated by 81 nucleotides ABZR87_RS18435 and ABZR87_RS18440 overlap by 4 nucleotides ABZR87_RS18440 and ABZR87_RS18445 are separated by 8 nucleotides ABZR87_RS18445 and ABZR87_RS18450 overlap by 1 nucleotides
ABZR87_RS18430: ABZR87_RS18430 - LysR family transcriptional regulator, at 496,617 to 497,537
_RS18430
ABZR87_RS18435: ABZR87_RS18435 - 2-dehydropantoate 2-reductase, at 497,619 to 498,569
_RS18435
ABZR87_RS18440: ABZR87_RS18440 - VOC family protein, at 498,566 to 498,958
_RS18440
ABZR87_RS18445: ABZR87_RS18445 - MaoC family dehydratase, at 498,967 to 499,425
_RS18445
ABZR87_RS18450: ABZR87_RS18450 - CoA transferase, at 499,425 to 500,651
_RS18450
Position (kb) 497
498
499 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 496.799 kb on + strand, within ABZR87_RS18430 at 496.848 kb on + strand, within ABZR87_RS18430 at 496.849 kb on - strand, within ABZR87_RS18430 at 496.849 kb on - strand, within ABZR87_RS18430 at 497.008 kb on - strand, within ABZR87_RS18430 at 497.023 kb on + strand, within ABZR87_RS18430 at 497.023 kb on + strand, within ABZR87_RS18430 at 497.023 kb on + strand, within ABZR87_RS18430 at 497.024 kb on + strand, within ABZR87_RS18430 at 497.024 kb on - strand, within ABZR87_RS18430 at 497.038 kb on + strand, within ABZR87_RS18430 at 497.038 kb on + strand, within ABZR87_RS18430 at 497.038 kb on + strand, within ABZR87_RS18430 at 497.039 kb on - strand, within ABZR87_RS18430 at 497.039 kb on - strand, within ABZR87_RS18430 at 497.039 kb on - strand, within ABZR87_RS18430 at 497.039 kb on - strand, within ABZR87_RS18430 at 497.039 kb on - strand, within ABZR87_RS18430 at 497.039 kb on - strand, within ABZR87_RS18430 at 497.065 kb on + strand, within ABZR87_RS18430 at 497.112 kb on - strand, within ABZR87_RS18430 at 497.163 kb on + strand, within ABZR87_RS18430 at 497.163 kb on + strand, within ABZR87_RS18430 at 497.164 kb on - strand, within ABZR87_RS18430 at 497.164 kb on - strand, within ABZR87_RS18430 at 497.164 kb on - strand, within ABZR87_RS18430 at 497.380 kb on + strand, within ABZR87_RS18430 at 497.380 kb on + strand, within ABZR87_RS18430 at 497.381 kb on - strand, within ABZR87_RS18430 at 497.467 kb on + strand at 497.468 kb on - strand at 497.572 kb on + strand at 497.574 kb on + strand at 497.588 kb on + strand at 497.588 kb on + strand at 497.588 kb on + strand at 497.994 kb on + strand, within ABZR87_RS18435 at 497.994 kb on + strand, within ABZR87_RS18435 at 497.994 kb on + strand, within ABZR87_RS18435 at 497.994 kb on + strand, within ABZR87_RS18435 at 497.995 kb on - strand, within ABZR87_RS18435 at 497.995 kb on - strand, within ABZR87_RS18435 at 498.026 kb on + strand, within ABZR87_RS18435 at 498.026 kb on + strand, within ABZR87_RS18435 at 498.026 kb on + strand, within ABZR87_RS18435 at 498.026 kb on + strand, within ABZR87_RS18435 at 498.027 kb on - strand, within ABZR87_RS18435 at 498.057 kb on + strand, within ABZR87_RS18435 at 498.058 kb on - strand, within ABZR87_RS18435 at 498.058 kb on - strand, within ABZR87_RS18435 at 498.058 kb on - strand, within ABZR87_RS18435 at 498.228 kb on + strand, within ABZR87_RS18435 at 498.229 kb on - strand, within ABZR87_RS18435 at 498.229 kb on - strand, within ABZR87_RS18435 at 498.241 kb on - strand, within ABZR87_RS18435 at 498.584 kb on + strand at 498.585 kb on - strand at 498.701 kb on + strand, within ABZR87_RS18440 at 498.702 kb on - strand, within ABZR87_RS18440 at 498.853 kb on + strand, within ABZR87_RS18440 at 498.854 kb on - strand, within ABZR87_RS18440 at 499.030 kb on + strand, within ABZR87_RS18445 at 499.031 kb on - strand, within ABZR87_RS18445 at 499.060 kb on + strand, within ABZR87_RS18445 at 499.108 kb on + strand, within ABZR87_RS18445 at 499.108 kb on + strand, within ABZR87_RS18445 at 499.108 kb on + strand, within ABZR87_RS18445 at 499.464 kb on + strand at 499.489 kb on - strand at 499.489 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction root sample 5; outgrowth in LB remove 496,799 + ABZR87_RS18430 0.20 -0.4 496,848 + ABZR87_RS18430 0.25 -0.3 496,849 - ABZR87_RS18430 0.25 -2.4 496,849 - ABZR87_RS18430 0.25 -0.5 497,008 - ABZR87_RS18430 0.42 +3.0 497,023 + ABZR87_RS18430 0.44 +0.1 497,023 + ABZR87_RS18430 0.44 +1.5 497,023 + ABZR87_RS18430 0.44 -0.5 497,024 + ABZR87_RS18430 0.44 -0.9 497,024 - ABZR87_RS18430 0.44 +0.8 497,038 + ABZR87_RS18430 0.46 +0.0 497,038 + ABZR87_RS18430 0.46 +2.7 497,038 + ABZR87_RS18430 0.46 +0.2 497,039 - ABZR87_RS18430 0.46 -1.2 497,039 - ABZR87_RS18430 0.46 -0.4 497,039 - ABZR87_RS18430 0.46 +0.0 497,039 - ABZR87_RS18430 0.46 -0.2 497,039 - ABZR87_RS18430 0.46 +0.1 497,039 - ABZR87_RS18430 0.46 -0.1 497,065 + ABZR87_RS18430 0.49 -2.1 497,112 - ABZR87_RS18430 0.54 -0.7 497,163 + ABZR87_RS18430 0.59 -0.2 497,163 + ABZR87_RS18430 0.59 +2.5 497,164 - ABZR87_RS18430 0.59 +0.1 497,164 - ABZR87_RS18430 0.59 -0.9 497,164 - ABZR87_RS18430 0.59 +0.5 497,380 + ABZR87_RS18430 0.83 -0.7 497,380 + ABZR87_RS18430 0.83 +0.8 497,381 - ABZR87_RS18430 0.83 +0.6 497,467 + +2.0 497,468 - +0.7 497,572 + -1.0 497,574 + -0.5 497,588 + +2.2 497,588 + +0.9 497,588 + +0.6 497,994 + ABZR87_RS18435 0.39 -0.7 497,994 + ABZR87_RS18435 0.39 +1.9 497,994 + ABZR87_RS18435 0.39 -0.8 497,994 + ABZR87_RS18435 0.39 -0.2 497,995 - ABZR87_RS18435 0.40 +1.2 497,995 - ABZR87_RS18435 0.40 -0.4 498,026 + ABZR87_RS18435 0.43 +0.6 498,026 + ABZR87_RS18435 0.43 -0.2 498,026 + ABZR87_RS18435 0.43 -1.4 498,026 + ABZR87_RS18435 0.43 -0.1 498,027 - ABZR87_RS18435 0.43 +0.0 498,057 + ABZR87_RS18435 0.46 +0.2 498,058 - ABZR87_RS18435 0.46 -0.4 498,058 - ABZR87_RS18435 0.46 -1.9 498,058 - ABZR87_RS18435 0.46 +1.2 498,228 + ABZR87_RS18435 0.64 -1.2 498,229 - ABZR87_RS18435 0.64 +1.2 498,229 - ABZR87_RS18435 0.64 +0.7 498,241 - ABZR87_RS18435 0.65 +1.0 498,584 + +0.1 498,585 - +0.3 498,701 + ABZR87_RS18440 0.34 -0.4 498,702 - ABZR87_RS18440 0.35 +0.7 498,853 + ABZR87_RS18440 0.73 -0.3 498,854 - ABZR87_RS18440 0.73 -0.8 499,030 + ABZR87_RS18445 0.14 -0.9 499,031 - ABZR87_RS18445 0.14 +1.2 499,060 + ABZR87_RS18445 0.20 +0.2 499,108 + ABZR87_RS18445 0.31 -2.6 499,108 + ABZR87_RS18445 0.31 -0.7 499,108 + ABZR87_RS18445 0.31 -1.6 499,464 + +2.5 499,489 - -0.5 499,489 - +1.0
Or see this region's nucleotide sequence