Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS18210

Experiment: root sample 5; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS18205 and ABZR87_RS18210 are separated by 27 nucleotidesABZR87_RS18210 and ABZR87_RS18215 overlap by 4 nucleotides ABZR87_RS18205: ABZR87_RS18205 - nucleobase:cation symporter-2 family protein, at 454,109 to 455,536 _RS18205 ABZR87_RS18210: ABZR87_RS18210 - aldose epimerase family protein, at 455,564 to 456,646 _RS18210 ABZR87_RS18215: ABZR87_RS18215 - DNA-binding transcriptional regulator, at 456,643 to 457,866 _RS18215 Position (kb) 455 456 457Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 454.889 kb on + strand, within ABZR87_RS18205at 454.889 kb on + strand, within ABZR87_RS18205at 454.890 kb on - strand, within ABZR87_RS18205at 454.890 kb on - strand, within ABZR87_RS18205at 455.092 kb on + strand, within ABZR87_RS18205at 455.093 kb on - strand, within ABZR87_RS18205at 455.147 kb on + strand, within ABZR87_RS18205at 455.147 kb on + strand, within ABZR87_RS18205at 455.147 kb on + strand, within ABZR87_RS18205at 455.147 kb on + strand, within ABZR87_RS18205at 455.148 kb on - strand, within ABZR87_RS18205at 455.207 kb on + strand, within ABZR87_RS18205at 455.207 kb on + strand, within ABZR87_RS18205at 455.208 kb on - strand, within ABZR87_RS18205at 455.231 kb on + strand, within ABZR87_RS18205at 455.232 kb on - strand, within ABZR87_RS18205at 455.232 kb on - strand, within ABZR87_RS18205at 455.232 kb on - strand, within ABZR87_RS18205at 455.593 kb on - strandat 455.610 kb on + strandat 455.690 kb on + strand, within ABZR87_RS18210at 455.690 kb on + strand, within ABZR87_RS18210at 455.691 kb on - strand, within ABZR87_RS18210at 455.691 kb on - strand, within ABZR87_RS18210at 455.737 kb on - strand, within ABZR87_RS18210at 455.796 kb on + strand, within ABZR87_RS18210at 455.843 kb on - strand, within ABZR87_RS18210at 456.124 kb on - strand, within ABZR87_RS18210at 456.124 kb on - strand, within ABZR87_RS18210at 456.257 kb on + strand, within ABZR87_RS18210at 456.324 kb on + strand, within ABZR87_RS18210at 456.324 kb on + strand, within ABZR87_RS18210at 456.324 kb on + strand, within ABZR87_RS18210at 456.325 kb on - strand, within ABZR87_RS18210at 456.344 kb on - strand, within ABZR87_RS18210at 456.415 kb on - strand, within ABZR87_RS18210at 456.712 kb on + strandat 456.725 kb on + strandat 456.725 kb on + strandat 456.726 kb on - strandat 456.726 kb on - strandat 456.726 kb on - strandat 456.726 kb on - strandat 456.738 kb on + strandat 456.738 kb on + strandat 456.739 kb on - strandat 456.739 kb on - strandat 456.889 kb on - strand, within ABZR87_RS18215at 456.968 kb on + strand, within ABZR87_RS18215at 456.968 kb on + strand, within ABZR87_RS18215at 456.969 kb on - strand, within ABZR87_RS18215at 456.969 kb on - strand, within ABZR87_RS18215at 456.969 kb on - strand, within ABZR87_RS18215at 457.356 kb on - strand, within ABZR87_RS18215at 457.408 kb on - strand, within ABZR87_RS18215at 457.544 kb on + strand, within ABZR87_RS18215at 457.544 kb on + strand, within ABZR87_RS18215at 457.544 kb on + strand, within ABZR87_RS18215at 457.544 kb on + strand, within ABZR87_RS18215at 457.544 kb on + strand, within ABZR87_RS18215at 457.545 kb on - strand, within ABZR87_RS18215at 457.545 kb on - strand, within ABZR87_RS18215at 457.562 kb on + strand, within ABZR87_RS18215at 457.563 kb on - strand, within ABZR87_RS18215at 457.580 kb on + strand, within ABZR87_RS18215at 457.581 kb on - strand, within ABZR87_RS18215at 457.581 kb on - strand, within ABZR87_RS18215

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Per-strain Table

Position Strand Gene LocusTag Fraction root sample 5; outgrowth in LB
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454,889 + ABZR87_RS18205 0.55 -0.6
454,889 + ABZR87_RS18205 0.55 +0.7
454,890 - ABZR87_RS18205 0.55 -0.5
454,890 - ABZR87_RS18205 0.55 +1.0
455,092 + ABZR87_RS18205 0.69 -1.2
455,093 - ABZR87_RS18205 0.69 +1.7
455,147 + ABZR87_RS18205 0.73 +0.1
455,147 + ABZR87_RS18205 0.73 +0.3
455,147 + ABZR87_RS18205 0.73 +0.4
455,147 + ABZR87_RS18205 0.73 +1.8
455,148 - ABZR87_RS18205 0.73 -0.6
455,207 + ABZR87_RS18205 0.77 -0.7
455,207 + ABZR87_RS18205 0.77 -0.5
455,208 - ABZR87_RS18205 0.77 +0.9
455,231 + ABZR87_RS18205 0.79 +0.4
455,232 - ABZR87_RS18205 0.79 -2.2
455,232 - ABZR87_RS18205 0.79 +0.7
455,232 - ABZR87_RS18205 0.79 -0.1
455,593 - -2.4
455,610 + -0.4
455,690 + ABZR87_RS18210 0.12 +0.9
455,690 + ABZR87_RS18210 0.12 +0.1
455,691 - ABZR87_RS18210 0.12 +0.5
455,691 - ABZR87_RS18210 0.12 -1.0
455,737 - ABZR87_RS18210 0.16 -2.1
455,796 + ABZR87_RS18210 0.21 +1.3
455,843 - ABZR87_RS18210 0.26 +0.5
456,124 - ABZR87_RS18210 0.52 +0.1
456,124 - ABZR87_RS18210 0.52 +0.8
456,257 + ABZR87_RS18210 0.64 +0.6
456,324 + ABZR87_RS18210 0.70 +0.3
456,324 + ABZR87_RS18210 0.70 -1.8
456,324 + ABZR87_RS18210 0.70 +5.3
456,325 - ABZR87_RS18210 0.70 +0.8
456,344 - ABZR87_RS18210 0.72 +0.3
456,415 - ABZR87_RS18210 0.79 +1.6
456,712 + -2.3
456,725 + -0.3
456,725 + -1.1
456,726 - -2.3
456,726 - -0.5
456,726 - +0.1
456,726 - +0.2
456,738 + -1.1
456,738 + -0.5
456,739 - +0.8
456,739 - -0.5
456,889 - ABZR87_RS18215 0.20 -0.7
456,968 + ABZR87_RS18215 0.27 -1.7
456,968 + ABZR87_RS18215 0.27 -1.7
456,969 - ABZR87_RS18215 0.27 -1.0
456,969 - ABZR87_RS18215 0.27 -0.7
456,969 - ABZR87_RS18215 0.27 +0.6
457,356 - ABZR87_RS18215 0.58 -0.0
457,408 - ABZR87_RS18215 0.62 -0.6
457,544 + ABZR87_RS18215 0.74 -0.3
457,544 + ABZR87_RS18215 0.74 +2.4
457,544 + ABZR87_RS18215 0.74 -2.7
457,544 + ABZR87_RS18215 0.74 +1.2
457,544 + ABZR87_RS18215 0.74 +1.4
457,545 - ABZR87_RS18215 0.74 +0.9
457,545 - ABZR87_RS18215 0.74 +0.2
457,562 + ABZR87_RS18215 0.75 -0.4
457,563 - ABZR87_RS18215 0.75 +0.8
457,580 + ABZR87_RS18215 0.77 +1.1
457,581 - ABZR87_RS18215 0.77 +0.8
457,581 - ABZR87_RS18215 0.77 +1.3

Or see this region's nucleotide sequence