Experiment: root sample 5; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS18120 and ABZR87_RS18125 are separated by 38 nucleotides ABZR87_RS18125 and ABZR87_RS18130 overlap by 1 nucleotides ABZR87_RS18130 and ABZR87_RS18135 are separated by 296 nucleotides
ABZR87_RS18120: ABZR87_RS18120 - type III secretion system outer membrane ring subunit SctC, at 427,831 to 429,708
_RS18120
ABZR87_RS18125: ABZR87_RS18125 - flagellar biosynthetic protein FliQ, at 429,747 to 430,025
_RS18125
ABZR87_RS18130: ABZR87_RS18130 - type III secretion system export apparatus subunit SctV, at 430,025 to 432,220
_RS18130
ABZR87_RS18135: ABZR87_RS18135 - FliM/FliN family flagellar motor switch protein, at 432,517 to 433,680
_RS18135
Position (kb) 430
431
432
433 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 429.068 kb on + strand, within ABZR87_RS18120 at 429.152 kb on + strand, within ABZR87_RS18120 at 429.152 kb on + strand, within ABZR87_RS18120 at 429.152 kb on + strand, within ABZR87_RS18120 at 429.153 kb on - strand, within ABZR87_RS18120 at 429.153 kb on - strand, within ABZR87_RS18120 at 429.263 kb on + strand, within ABZR87_RS18120 at 429.263 kb on + strand, within ABZR87_RS18120 at 429.264 kb on - strand, within ABZR87_RS18120 at 429.264 kb on - strand, within ABZR87_RS18120 at 429.264 kb on - strand, within ABZR87_RS18120 at 429.408 kb on - strand, within ABZR87_RS18120 at 429.408 kb on - strand, within ABZR87_RS18120 at 429.425 kb on + strand, within ABZR87_RS18120 at 429.425 kb on + strand, within ABZR87_RS18120 at 429.425 kb on + strand, within ABZR87_RS18120 at 429.426 kb on - strand, within ABZR87_RS18120 at 429.428 kb on + strand, within ABZR87_RS18120 at 429.443 kb on + strand, within ABZR87_RS18120 at 429.661 kb on - strand at 430.185 kb on + strand at 430.185 kb on + strand at 430.185 kb on + strand at 430.186 kb on - strand at 430.929 kb on + strand, within ABZR87_RS18130 at 430.930 kb on - strand, within ABZR87_RS18130 at 430.930 kb on - strand, within ABZR87_RS18130 at 430.930 kb on - strand, within ABZR87_RS18130 at 430.930 kb on - strand, within ABZR87_RS18130 at 430.930 kb on - strand, within ABZR87_RS18130 at 430.930 kb on - strand, within ABZR87_RS18130 at 430.938 kb on + strand, within ABZR87_RS18130 at 430.939 kb on - strand, within ABZR87_RS18130 at 430.965 kb on + strand, within ABZR87_RS18130 at 430.965 kb on + strand, within ABZR87_RS18130 at 430.966 kb on - strand, within ABZR87_RS18130 at 431.869 kb on + strand, within ABZR87_RS18130 at 431.950 kb on + strand, within ABZR87_RS18130 at 432.000 kb on + strand, within ABZR87_RS18130 at 432.001 kb on - strand at 432.229 kb on + strand at 432.230 kb on - strand at 432.239 kb on + strand at 432.239 kb on + strand at 432.240 kb on - strand at 432.240 kb on - strand at 432.240 kb on - strand at 432.338 kb on + strand at 432.338 kb on + strand at 432.339 kb on - strand at 432.339 kb on - strand at 432.443 kb on + strand at 432.444 kb on - strand at 432.595 kb on + strand at 432.595 kb on + strand at 432.596 kb on - strand at 432.596 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction root sample 5; outgrowth in LB remove 429,068 + ABZR87_RS18120 0.66 -0.8 429,152 + ABZR87_RS18120 0.70 +0.7 429,152 + ABZR87_RS18120 0.70 -0.3 429,152 + ABZR87_RS18120 0.70 +0.8 429,153 - ABZR87_RS18120 0.70 +0.1 429,153 - ABZR87_RS18120 0.70 -1.9 429,263 + ABZR87_RS18120 0.76 -0.3 429,263 + ABZR87_RS18120 0.76 -0.3 429,264 - ABZR87_RS18120 0.76 -0.3 429,264 - ABZR87_RS18120 0.76 -1.4 429,264 - ABZR87_RS18120 0.76 +0.3 429,408 - ABZR87_RS18120 0.84 -0.8 429,408 - ABZR87_RS18120 0.84 -0.7 429,425 + ABZR87_RS18120 0.85 -1.0 429,425 + ABZR87_RS18120 0.85 -1.6 429,425 + ABZR87_RS18120 0.85 -0.6 429,426 - ABZR87_RS18120 0.85 +2.5 429,428 + ABZR87_RS18120 0.85 -0.7 429,443 + ABZR87_RS18120 0.86 +0.3 429,661 - -2.1 430,185 + +0.7 430,185 + -0.1 430,185 + -0.6 430,186 - +2.5 430,929 + ABZR87_RS18130 0.41 -2.2 430,930 - ABZR87_RS18130 0.41 -3.5 430,930 - ABZR87_RS18130 0.41 +0.9 430,930 - ABZR87_RS18130 0.41 -0.5 430,930 - ABZR87_RS18130 0.41 +0.4 430,930 - ABZR87_RS18130 0.41 -0.4 430,930 - ABZR87_RS18130 0.41 -2.7 430,938 + ABZR87_RS18130 0.42 -1.6 430,939 - ABZR87_RS18130 0.42 +0.7 430,965 + ABZR87_RS18130 0.43 -0.2 430,965 + ABZR87_RS18130 0.43 -0.5 430,966 - ABZR87_RS18130 0.43 -0.4 431,869 + ABZR87_RS18130 0.84 +1.2 431,950 + ABZR87_RS18130 0.88 +1.1 432,000 + ABZR87_RS18130 0.90 -0.8 432,001 - +0.7 432,229 + +0.8 432,230 - -0.1 432,239 + +0.2 432,239 + +0.0 432,240 - -0.7 432,240 - -0.3 432,240 - -0.2 432,338 + +0.8 432,338 + -1.2 432,339 - +1.0 432,339 - -0.4 432,443 + +0.4 432,444 - -1.0 432,595 + +1.2 432,595 + -0.4 432,596 - -0.3 432,596 - +2.4
Or see this region's nucleotide sequence