Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS17670

Experiment: root sample 5; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS17660 and ABZR87_RS17665 are separated by 144 nucleotidesABZR87_RS17665 and ABZR87_RS17670 overlap by 4 nucleotidesABZR87_RS17670 and ABZR87_RS17675 overlap by 4 nucleotidesABZR87_RS17675 and ABZR87_RS17680 are separated by 161 nucleotides ABZR87_RS17660: ABZR87_RS17660 - efflux RND transporter permease subunit, at 327,128 to 330,250 _RS17660 ABZR87_RS17665: ABZR87_RS17665 - PAS domain-containing protein, at 330,395 to 331,036 _RS17665 ABZR87_RS17670: ABZR87_RS17670 - threo-3-hydroxy-L-aspartate ammonia-lyase, at 331,033 to 332,010 _RS17670 ABZR87_RS17675: ABZR87_RS17675 - RidA family protein, at 332,007 to 332,396 _RS17675 ABZR87_RS17680: ABZR87_RS17680 - flagellar brake protein, at 332,558 to 333,439 _RS17680 Position (kb) 331 332 333Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 330.091 kb on + strandat 330.091 kb on + strandat 330.091 kb on + strandat 330.091 kb on + strandat 330.092 kb on - strandat 330.092 kb on - strandat 330.092 kb on - strandat 330.092 kb on - strandat 330.092 kb on - strandat 330.152 kb on + strandat 330.152 kb on + strandat 330.152 kb on + strandat 330.152 kb on + strandat 330.153 kb on - strandat 330.153 kb on - strandat 330.153 kb on - strandat 330.153 kb on - strandat 330.153 kb on - strandat 330.248 kb on + strandat 330.248 kb on + strandat 330.249 kb on - strandat 330.256 kb on + strandat 330.274 kb on - strandat 330.274 kb on - strandat 330.701 kb on + strand, within ABZR87_RS17665at 330.713 kb on - strand, within ABZR87_RS17665at 330.713 kb on - strand, within ABZR87_RS17665at 330.732 kb on + strand, within ABZR87_RS17665at 330.732 kb on + strand, within ABZR87_RS17665at 330.732 kb on + strand, within ABZR87_RS17665at 330.732 kb on + strand, within ABZR87_RS17665at 330.733 kb on - strand, within ABZR87_RS17665at 330.733 kb on - strand, within ABZR87_RS17665at 331.007 kb on + strandat 331.007 kb on + strandat 331.007 kb on + strandat 331.008 kb on - strandat 331.008 kb on - strandat 331.008 kb on - strandat 331.008 kb on - strandat 331.013 kb on + strandat 331.013 kb on + strandat 331.013 kb on + strandat 331.014 kb on - strandat 331.014 kb on - strandat 331.014 kb on - strandat 331.014 kb on - strandat 331.051 kb on + strandat 331.207 kb on + strand, within ABZR87_RS17670at 331.207 kb on + strand, within ABZR87_RS17670at 331.207 kb on + strand, within ABZR87_RS17670at 331.207 kb on + strand, within ABZR87_RS17670at 331.208 kb on - strand, within ABZR87_RS17670at 331.208 kb on - strand, within ABZR87_RS17670at 331.409 kb on - strand, within ABZR87_RS17670at 331.409 kb on - strand, within ABZR87_RS17670at 331.461 kb on + strand, within ABZR87_RS17670at 331.461 kb on + strand, within ABZR87_RS17670at 331.462 kb on - strand, within ABZR87_RS17670at 331.477 kb on + strand, within ABZR87_RS17670at 331.477 kb on + strand, within ABZR87_RS17670at 331.478 kb on - strand, within ABZR87_RS17670at 331.553 kb on + strand, within ABZR87_RS17670at 331.553 kb on + strand, within ABZR87_RS17670at 331.553 kb on + strand, within ABZR87_RS17670at 331.554 kb on - strand, within ABZR87_RS17670at 331.554 kb on - strand, within ABZR87_RS17670at 331.554 kb on - strand, within ABZR87_RS17670at 331.554 kb on - strand, within ABZR87_RS17670at 331.707 kb on + strand, within ABZR87_RS17670at 331.708 kb on - strand, within ABZR87_RS17670at 331.708 kb on - strand, within ABZR87_RS17670at 332.022 kb on + strandat 332.022 kb on + strandat 332.061 kb on + strand, within ABZR87_RS17675at 332.062 kb on - strand, within ABZR87_RS17675at 332.062 kb on - strand, within ABZR87_RS17675at 332.062 kb on - strand, within ABZR87_RS17675at 332.062 kb on - strand, within ABZR87_RS17675at 332.244 kb on + strand, within ABZR87_RS17675at 332.244 kb on + strand, within ABZR87_RS17675at 332.244 kb on + strand, within ABZR87_RS17675at 332.245 kb on - strand, within ABZR87_RS17675at 332.245 kb on - strand, within ABZR87_RS17675at 332.245 kb on - strand, within ABZR87_RS17675at 332.353 kb on - strand, within ABZR87_RS17675at 332.491 kb on + strandat 332.820 kb on + strand, within ABZR87_RS17680at 332.821 kb on - strand, within ABZR87_RS17680at 332.882 kb on + strand, within ABZR87_RS17680at 332.882 kb on + strand, within ABZR87_RS17680at 332.882 kb on + strand, within ABZR87_RS17680at 332.883 kb on - strand, within ABZR87_RS17680at 332.883 kb on - strand, within ABZR87_RS17680at 332.883 kb on - strand, within ABZR87_RS17680at 332.883 kb on - strand, within ABZR87_RS17680at 332.884 kb on + strand, within ABZR87_RS17680at 332.884 kb on + strand, within ABZR87_RS17680at 332.885 kb on - strand, within ABZR87_RS17680at 332.885 kb on - strand, within ABZR87_RS17680

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Per-strain Table

Position Strand Gene LocusTag Fraction root sample 5; outgrowth in LB
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330,091 + +0.0
330,091 + -1.3
330,091 + +1.6
330,091 + -0.1
330,092 - +1.2
330,092 - +0.4
330,092 - -0.2
330,092 - +1.0
330,092 - -0.4
330,152 + -2.3
330,152 + +0.1
330,152 + -0.4
330,152 + +0.2
330,153 - +0.4
330,153 - -0.5
330,153 - -0.3
330,153 - +0.5
330,153 - -0.0
330,248 + +1.7
330,248 + +1.2
330,249 - +1.0
330,256 + +1.6
330,274 - -0.0
330,274 - +0.9
330,701 + ABZR87_RS17665 0.48 -0.4
330,713 - ABZR87_RS17665 0.50 +4.3
330,713 - ABZR87_RS17665 0.50 -0.0
330,732 + ABZR87_RS17665 0.52 +0.7
330,732 + ABZR87_RS17665 0.52 -1.0
330,732 + ABZR87_RS17665 0.52 -0.6
330,732 + ABZR87_RS17665 0.52 +0.6
330,733 - ABZR87_RS17665 0.53 +0.6
330,733 - ABZR87_RS17665 0.53 -1.2
331,007 + +0.9
331,007 + +1.5
331,007 + -1.0
331,008 - -1.7
331,008 - -0.1
331,008 - -0.1
331,008 - -0.2
331,013 + +0.6
331,013 + +0.4
331,013 + -1.1
331,014 - -0.7
331,014 - +1.4
331,014 - -0.2
331,014 - -0.1
331,051 + -0.1
331,207 + ABZR87_RS17670 0.18 -1.5
331,207 + ABZR87_RS17670 0.18 +0.5
331,207 + ABZR87_RS17670 0.18 -0.0
331,207 + ABZR87_RS17670 0.18 -1.4
331,208 - ABZR87_RS17670 0.18 +1.0
331,208 - ABZR87_RS17670 0.18 +1.1
331,409 - ABZR87_RS17670 0.38 +0.4
331,409 - ABZR87_RS17670 0.38 -1.6
331,461 + ABZR87_RS17670 0.44 -2.0
331,461 + ABZR87_RS17670 0.44 +0.2
331,462 - ABZR87_RS17670 0.44 -1.1
331,477 + ABZR87_RS17670 0.45 -0.8
331,477 + ABZR87_RS17670 0.45 -0.5
331,478 - ABZR87_RS17670 0.46 -0.1
331,553 + ABZR87_RS17670 0.53 -0.1
331,553 + ABZR87_RS17670 0.53 -2.4
331,553 + ABZR87_RS17670 0.53 -0.0
331,554 - ABZR87_RS17670 0.53 +0.1
331,554 - ABZR87_RS17670 0.53 -0.2
331,554 - ABZR87_RS17670 0.53 -0.7
331,554 - ABZR87_RS17670 0.53 -1.2
331,707 + ABZR87_RS17670 0.69 +0.6
331,708 - ABZR87_RS17670 0.69 +1.6
331,708 - ABZR87_RS17670 0.69 -1.5
332,022 + +0.7
332,022 + -1.0
332,061 + ABZR87_RS17675 0.14 -0.3
332,062 - ABZR87_RS17675 0.14 +0.0
332,062 - ABZR87_RS17675 0.14 +0.2
332,062 - ABZR87_RS17675 0.14 -0.0
332,062 - ABZR87_RS17675 0.14 -0.4
332,244 + ABZR87_RS17675 0.61 -0.1
332,244 + ABZR87_RS17675 0.61 -0.5
332,244 + ABZR87_RS17675 0.61 -0.1
332,245 - ABZR87_RS17675 0.61 -1.3
332,245 - ABZR87_RS17675 0.61 -0.8
332,245 - ABZR87_RS17675 0.61 +0.3
332,353 - ABZR87_RS17675 0.89 -0.0
332,491 + -0.1
332,820 + ABZR87_RS17680 0.30 +0.0
332,821 - ABZR87_RS17680 0.30 +0.0
332,882 + ABZR87_RS17680 0.37 +1.2
332,882 + ABZR87_RS17680 0.37 -0.2
332,882 + ABZR87_RS17680 0.37 +0.0
332,883 - ABZR87_RS17680 0.37 -0.1
332,883 - ABZR87_RS17680 0.37 -0.5
332,883 - ABZR87_RS17680 0.37 +0.1
332,883 - ABZR87_RS17680 0.37 -1.0
332,884 + ABZR87_RS17680 0.37 -1.4
332,884 + ABZR87_RS17680 0.37 +1.2
332,885 - ABZR87_RS17680 0.37 +0.8
332,885 - ABZR87_RS17680 0.37 +1.4

Or see this region's nucleotide sequence