Experiment: root sample 5; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS17590 and ABZR87_RS17595 are separated by 294 nucleotides ABZR87_RS17595 and ABZR87_RS17600 are separated by 285 nucleotides
ABZR87_RS17590: ABZR87_RS17590 - sensor domain-containing diguanylate cyclase, at 309,168 to 310,685
_RS17590
ABZR87_RS17595: ABZR87_RS17595 - hypothetical protein, at 310,980 to 311,174
_RS17595
ABZR87_RS17600: ABZR87_RS17600 - bifunctional lysylphosphatidylglycerol flippase/synthetase MprF, at 311,460 to 314,093
_RS17600
Position (kb) 310
311
312 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 310.019 kb on - strand, within ABZR87_RS17590 at 310.232 kb on + strand, within ABZR87_RS17590 at 310.232 kb on + strand, within ABZR87_RS17590 at 310.232 kb on + strand, within ABZR87_RS17590 at 310.232 kb on + strand, within ABZR87_RS17590 at 310.233 kb on - strand, within ABZR87_RS17590 at 310.233 kb on - strand, within ABZR87_RS17590 at 310.233 kb on - strand, within ABZR87_RS17590 at 310.233 kb on - strand, within ABZR87_RS17590 at 310.234 kb on + strand, within ABZR87_RS17590 at 310.234 kb on + strand, within ABZR87_RS17590 at 310.234 kb on + strand, within ABZR87_RS17590 at 310.234 kb on + strand, within ABZR87_RS17590 at 310.234 kb on + strand, within ABZR87_RS17590 at 310.235 kb on - strand, within ABZR87_RS17590 at 310.235 kb on - strand, within ABZR87_RS17590 at 310.235 kb on - strand, within ABZR87_RS17590 at 310.235 kb on - strand, within ABZR87_RS17590 at 310.235 kb on - strand, within ABZR87_RS17590 at 310.274 kb on - strand, within ABZR87_RS17590 at 310.291 kb on + strand, within ABZR87_RS17590 at 310.291 kb on + strand, within ABZR87_RS17590 at 310.292 kb on - strand, within ABZR87_RS17590 at 310.292 kb on - strand, within ABZR87_RS17590 at 310.292 kb on - strand, within ABZR87_RS17590 at 310.292 kb on - strand, within ABZR87_RS17590 at 310.480 kb on + strand, within ABZR87_RS17590 at 310.480 kb on + strand, within ABZR87_RS17590 at 310.480 kb on + strand, within ABZR87_RS17590 at 310.480 kb on + strand, within ABZR87_RS17590 at 310.480 kb on + strand, within ABZR87_RS17590 at 310.480 kb on + strand, within ABZR87_RS17590 at 310.480 kb on + strand, within ABZR87_RS17590 at 310.480 kb on + strand, within ABZR87_RS17590 at 310.481 kb on - strand, within ABZR87_RS17590 at 310.481 kb on - strand, within ABZR87_RS17590 at 310.481 kb on - strand, within ABZR87_RS17590 at 310.481 kb on - strand, within ABZR87_RS17590 at 310.481 kb on - strand, within ABZR87_RS17590 at 310.481 kb on - strand, within ABZR87_RS17590 at 310.481 kb on - strand, within ABZR87_RS17590 at 310.481 kb on - strand, within ABZR87_RS17590 at 310.481 kb on - strand, within ABZR87_RS17590 at 310.638 kb on + strand at 310.677 kb on + strand at 310.678 kb on - strand at 310.703 kb on + strand at 310.703 kb on + strand at 310.755 kb on - strand at 310.755 kb on - strand at 310.755 kb on - strand at 310.755 kb on - strand at 310.755 kb on - strand at 310.755 kb on - strand at 310.755 kb on - strand at 310.757 kb on + strand at 310.757 kb on + strand at 310.757 kb on + strand at 310.758 kb on - strand at 310.761 kb on + strand at 310.762 kb on - strand at 310.854 kb on + strand at 310.854 kb on + strand at 310.855 kb on - strand at 310.855 kb on - strand at 310.904 kb on + strand at 310.904 kb on + strand at 310.904 kb on + strand at 310.904 kb on + strand at 310.904 kb on + strand at 310.904 kb on + strand at 310.904 kb on + strand at 310.904 kb on + strand at 310.904 kb on + strand at 310.904 kb on + strand at 310.904 kb on + strand at 310.904 kb on + strand at 310.904 kb on + strand at 310.904 kb on + strand at 310.904 kb on + strand at 310.905 kb on - strand at 310.905 kb on - strand at 310.905 kb on - strand at 310.905 kb on - strand at 310.905 kb on - strand at 310.905 kb on - strand at 310.905 kb on - strand at 310.905 kb on - strand at 310.905 kb on - strand at 310.905 kb on - strand at 310.905 kb on - strand at 310.905 kb on - strand at 310.905 kb on - strand at 310.905 kb on - strand at 310.950 kb on + strand at 310.950 kb on + strand at 310.951 kb on - strand at 310.951 kb on - strand at 310.960 kb on - strand at 311.048 kb on + strand, within ABZR87_RS17595 at 311.049 kb on - strand, within ABZR87_RS17595 at 311.172 kb on + strand at 311.172 kb on + strand at 311.173 kb on - strand at 311.218 kb on + strand at 311.218 kb on + strand at 311.218 kb on + strand at 311.218 kb on + strand at 311.218 kb on + strand at 311.218 kb on + strand at 311.218 kb on + strand at 311.218 kb on + strand at 311.219 kb on - strand at 311.219 kb on - strand at 311.219 kb on - strand at 311.219 kb on - strand at 311.219 kb on - strand at 311.219 kb on - strand at 311.219 kb on - strand at 311.311 kb on + strand at 311.655 kb on + strand at 311.655 kb on + strand at 311.655 kb on + strand at 311.733 kb on + strand, within ABZR87_RS17600 at 311.733 kb on + strand, within ABZR87_RS17600 at 311.734 kb on - strand, within ABZR87_RS17600 at 311.734 kb on - strand, within ABZR87_RS17600 at 311.752 kb on - strand, within ABZR87_RS17600 at 311.772 kb on + strand, within ABZR87_RS17600 at 311.773 kb on - strand, within ABZR87_RS17600 at 311.820 kb on - strand, within ABZR87_RS17600 at 311.826 kb on + strand, within ABZR87_RS17600 at 311.826 kb on + strand, within ABZR87_RS17600 at 311.826 kb on + strand, within ABZR87_RS17600 at 311.827 kb on - strand, within ABZR87_RS17600 at 311.827 kb on - strand, within ABZR87_RS17600 at 311.827 kb on - strand, within ABZR87_RS17600 at 311.841 kb on - strand, within ABZR87_RS17600 at 311.889 kb on + strand, within ABZR87_RS17600 at 311.890 kb on - strand, within ABZR87_RS17600 at 312.010 kb on + strand, within ABZR87_RS17600 at 312.091 kb on + strand, within ABZR87_RS17600 at 312.091 kb on + strand, within ABZR87_RS17600 at 312.091 kb on + strand, within ABZR87_RS17600 at 312.091 kb on + strand, within ABZR87_RS17600 at 312.091 kb on + strand, within ABZR87_RS17600 at 312.091 kb on + strand, within ABZR87_RS17600 at 312.091 kb on + strand, within ABZR87_RS17600 at 312.092 kb on - strand, within ABZR87_RS17600
Per-strain Table
Position Strand Gene LocusTag Fraction root sample 5; outgrowth in LB remove 310,019 - ABZR87_RS17590 0.56 +0.5 310,232 + ABZR87_RS17590 0.70 -0.7 310,232 + ABZR87_RS17590 0.70 +1.0 310,232 + ABZR87_RS17590 0.70 -1.2 310,232 + ABZR87_RS17590 0.70 +3.2 310,233 - ABZR87_RS17590 0.70 +3.3 310,233 - ABZR87_RS17590 0.70 -0.6 310,233 - ABZR87_RS17590 0.70 +0.9 310,233 - ABZR87_RS17590 0.70 +0.0 310,234 + ABZR87_RS17590 0.70 +1.0 310,234 + ABZR87_RS17590 0.70 +2.2 310,234 + ABZR87_RS17590 0.70 -1.3 310,234 + ABZR87_RS17590 0.70 -1.6 310,234 + ABZR87_RS17590 0.70 +1.2 310,235 - ABZR87_RS17590 0.70 +0.8 310,235 - ABZR87_RS17590 0.70 -0.5 310,235 - ABZR87_RS17590 0.70 +1.2 310,235 - ABZR87_RS17590 0.70 -1.3 310,235 - ABZR87_RS17590 0.70 +0.7 310,274 - ABZR87_RS17590 0.73 -2.1 310,291 + ABZR87_RS17590 0.74 -0.6 310,291 + ABZR87_RS17590 0.74 -0.6 310,292 - ABZR87_RS17590 0.74 -0.6 310,292 - ABZR87_RS17590 0.74 +1.0 310,292 - ABZR87_RS17590 0.74 -0.2 310,292 - ABZR87_RS17590 0.74 -0.7 310,480 + ABZR87_RS17590 0.86 -2.0 310,480 + ABZR87_RS17590 0.86 -0.1 310,480 + ABZR87_RS17590 0.86 -0.1 310,480 + ABZR87_RS17590 0.86 +0.7 310,480 + ABZR87_RS17590 0.86 -0.4 310,480 + ABZR87_RS17590 0.86 +0.4 310,480 + ABZR87_RS17590 0.86 -0.2 310,480 + ABZR87_RS17590 0.86 +0.0 310,481 - ABZR87_RS17590 0.86 +1.5 310,481 - ABZR87_RS17590 0.86 +0.7 310,481 - ABZR87_RS17590 0.86 -0.1 310,481 - ABZR87_RS17590 0.86 +0.6 310,481 - ABZR87_RS17590 0.86 +1.3 310,481 - ABZR87_RS17590 0.86 -0.0 310,481 - ABZR87_RS17590 0.86 -0.4 310,481 - ABZR87_RS17590 0.86 -0.4 310,481 - ABZR87_RS17590 0.86 -1.0 310,638 + -1.4 310,677 + -0.8 310,678 - +0.2 310,703 + -1.6 310,703 + -0.5 310,755 - +1.4 310,755 - +1.1 310,755 - -1.1 310,755 - -0.3 310,755 - -0.2 310,755 - -1.6 310,755 - +1.4 310,757 + +0.1 310,757 + +0.3 310,757 + -0.5 310,758 - +0.8 310,761 + -1.6 310,762 - +1.5 310,854 + +0.9 310,854 + -0.7 310,855 - -0.4 310,855 - +1.4 310,904 + -1.2 310,904 + +0.1 310,904 + -1.5 310,904 + +1.9 310,904 + -1.0 310,904 + -1.9 310,904 + -1.9 310,904 + -1.7 310,904 + -0.4 310,904 + +0.3 310,904 + -0.2 310,904 + -2.1 310,904 + -2.0 310,904 + -1.2 310,904 + -0.5 310,905 - -0.2 310,905 - +1.3 310,905 - +0.9 310,905 - -1.4 310,905 - -0.6 310,905 - -1.0 310,905 - +1.1 310,905 - -1.4 310,905 - -2.0 310,905 - +1.6 310,905 - +0.5 310,905 - +1.6 310,905 - +0.4 310,905 - +0.4 310,950 + -0.3 310,950 + -0.5 310,951 - -0.4 310,951 - -0.6 310,960 - -0.4 311,048 + ABZR87_RS17595 0.35 -0.9 311,049 - ABZR87_RS17595 0.35 +0.0 311,172 + -0.8 311,172 + -0.4 311,173 - +1.8 311,218 + -0.5 311,218 + -0.5 311,218 + -0.6 311,218 + +0.0 311,218 + +0.4 311,218 + +0.4 311,218 + +1.8 311,218 + -1.8 311,219 - +0.1 311,219 - -1.5 311,219 - -1.1 311,219 - -0.8 311,219 - -1.4 311,219 - +0.4 311,219 - -1.5 311,311 + +0.3 311,655 + +0.7 311,655 + +0.2 311,655 + -1.6 311,733 + ABZR87_RS17600 0.10 -0.4 311,733 + ABZR87_RS17600 0.10 -0.7 311,734 - ABZR87_RS17600 0.10 -0.3 311,734 - ABZR87_RS17600 0.10 -0.3 311,752 - ABZR87_RS17600 0.11 +0.5 311,772 + ABZR87_RS17600 0.12 -1.5 311,773 - ABZR87_RS17600 0.12 -0.2 311,820 - ABZR87_RS17600 0.14 +1.5 311,826 + ABZR87_RS17600 0.14 +0.5 311,826 + ABZR87_RS17600 0.14 +1.6 311,826 + ABZR87_RS17600 0.14 +0.2 311,827 - ABZR87_RS17600 0.14 -0.6 311,827 - ABZR87_RS17600 0.14 -0.5 311,827 - ABZR87_RS17600 0.14 -1.0 311,841 - ABZR87_RS17600 0.14 -0.8 311,889 + ABZR87_RS17600 0.16 +0.0 311,890 - ABZR87_RS17600 0.16 +0.8 312,010 + ABZR87_RS17600 0.21 -0.6 312,091 + ABZR87_RS17600 0.24 -0.2 312,091 + ABZR87_RS17600 0.24 +1.2 312,091 + ABZR87_RS17600 0.24 +0.3 312,091 + ABZR87_RS17600 0.24 -0.2 312,091 + ABZR87_RS17600 0.24 -0.4 312,091 + ABZR87_RS17600 0.24 -0.4 312,091 + ABZR87_RS17600 0.24 +0.3 312,092 - ABZR87_RS17600 0.24 +0.4
Or see this region's nucleotide sequence