Experiment: root sample 5; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS17390 and ABZR87_RS17395 overlap by 4 nucleotides ABZR87_RS17395 and ABZR87_RS17400 are separated by 4 nucleotides
ABZR87_RS17390: ABZR87_RS17390 - flavin reductase family protein, at 261,014 to 261,595
_RS17390
ABZR87_RS17395: ABZR87_RS17395 - GNAT family protein, at 261,592 to 262,104
_RS17395
ABZR87_RS17400: ABZR87_RS17400 - amidohydrolase family protein, at 262,109 to 263,497
_RS17400
Position (kb) 261
262
263 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 260.721 kb on - strand at 260.721 kb on - strand at 260.979 kb on + strand at 260.980 kb on - strand at 260.980 kb on - strand at 260.980 kb on - strand at 261.042 kb on + strand at 261.503 kb on - strand, within ABZR87_RS17390 at 261.530 kb on + strand, within ABZR87_RS17390 at 261.530 kb on + strand, within ABZR87_RS17390 at 261.530 kb on + strand, within ABZR87_RS17390 at 261.531 kb on - strand, within ABZR87_RS17390 at 261.531 kb on - strand, within ABZR87_RS17390 at 261.531 kb on - strand, within ABZR87_RS17390 at 261.531 kb on - strand, within ABZR87_RS17390 at 261.571 kb on + strand at 261.572 kb on - strand at 261.572 kb on - strand at 261.572 kb on - strand at 262.000 kb on + strand, within ABZR87_RS17395 at 262.000 kb on + strand, within ABZR87_RS17395 at 262.066 kb on + strand at 262.066 kb on + strand at 262.067 kb on - strand at 262.103 kb on - strand at 262.285 kb on - strand, within ABZR87_RS17400 at 262.285 kb on - strand, within ABZR87_RS17400 at 262.308 kb on + strand, within ABZR87_RS17400 at 262.308 kb on + strand, within ABZR87_RS17400 at 262.499 kb on + strand, within ABZR87_RS17400 at 262.500 kb on - strand, within ABZR87_RS17400 at 262.726 kb on - strand, within ABZR87_RS17400 at 262.726 kb on - strand, within ABZR87_RS17400 at 262.749 kb on + strand, within ABZR87_RS17400 at 262.749 kb on + strand, within ABZR87_RS17400 at 262.749 kb on + strand, within ABZR87_RS17400 at 262.749 kb on + strand, within ABZR87_RS17400 at 262.749 kb on + strand, within ABZR87_RS17400 at 262.749 kb on + strand, within ABZR87_RS17400 at 262.750 kb on - strand, within ABZR87_RS17400 at 262.750 kb on - strand, within ABZR87_RS17400 at 262.750 kb on - strand, within ABZR87_RS17400 at 262.774 kb on + strand, within ABZR87_RS17400 at 262.775 kb on - strand, within ABZR87_RS17400 at 262.775 kb on - strand, within ABZR87_RS17400 at 262.903 kb on - strand, within ABZR87_RS17400 at 263.094 kb on + strand, within ABZR87_RS17400 at 263.095 kb on - strand, within ABZR87_RS17400 at 263.101 kb on - strand, within ABZR87_RS17400
Per-strain Table
Position Strand Gene LocusTag Fraction root sample 5; outgrowth in LB remove 260,721 - -1.8 260,721 - +0.1 260,979 + +1.2 260,980 - +0.1 260,980 - -1.7 260,980 - +1.0 261,042 + +0.9 261,503 - ABZR87_RS17390 0.84 -2.5 261,530 + ABZR87_RS17390 0.89 -2.2 261,530 + ABZR87_RS17390 0.89 -1.7 261,530 + ABZR87_RS17390 0.89 +1.3 261,531 - ABZR87_RS17390 0.89 +0.5 261,531 - ABZR87_RS17390 0.89 -0.6 261,531 - ABZR87_RS17390 0.89 +0.5 261,531 - ABZR87_RS17390 0.89 +0.7 261,571 + +0.7 261,572 - +2.1 261,572 - +0.2 261,572 - +0.9 262,000 + ABZR87_RS17395 0.80 -1.2 262,000 + ABZR87_RS17395 0.80 -1.4 262,066 + -0.1 262,066 + -0.4 262,067 - +1.5 262,103 - +0.1 262,285 - ABZR87_RS17400 0.13 -0.3 262,285 - ABZR87_RS17400 0.13 -1.6 262,308 + ABZR87_RS17400 0.14 +1.8 262,308 + ABZR87_RS17400 0.14 -0.4 262,499 + ABZR87_RS17400 0.28 -1.2 262,500 - ABZR87_RS17400 0.28 +1.6 262,726 - ABZR87_RS17400 0.44 +0.8 262,726 - ABZR87_RS17400 0.44 +1.3 262,749 + ABZR87_RS17400 0.46 +0.5 262,749 + ABZR87_RS17400 0.46 -0.5 262,749 + ABZR87_RS17400 0.46 +0.2 262,749 + ABZR87_RS17400 0.46 -0.2 262,749 + ABZR87_RS17400 0.46 +0.0 262,749 + ABZR87_RS17400 0.46 -0.2 262,750 - ABZR87_RS17400 0.46 -0.2 262,750 - ABZR87_RS17400 0.46 -0.9 262,750 - ABZR87_RS17400 0.46 +0.1 262,774 + ABZR87_RS17400 0.48 -0.3 262,775 - ABZR87_RS17400 0.48 -1.3 262,775 - ABZR87_RS17400 0.48 +0.4 262,903 - ABZR87_RS17400 0.57 -2.9 263,094 + ABZR87_RS17400 0.71 +2.5 263,095 - ABZR87_RS17400 0.71 +0.8 263,101 - ABZR87_RS17400 0.71 -1.1
Or see this region's nucleotide sequence