Experiment: root sample 5; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS16780 and ABZR87_RS16785 are separated by 53 nucleotides ABZR87_RS16785 and ABZR87_RS16790 are separated by 37 nucleotides ABZR87_RS16790 and ABZR87_RS16795 are separated by 141 nucleotides
ABZR87_RS16780: ABZR87_RS16780 - YadA-like family protein, at 118,571 to 123,865
_RS16780
ABZR87_RS16785: ABZR87_RS16785 - outer membrane protein assembly factor BamE, at 123,919 to 124,308
_RS16785
ABZR87_RS16790: ABZR87_RS16790 - DUF4019 domain-containing protein, at 124,346 to 124,819
_RS16790
ABZR87_RS16795: ABZR87_RS16795 - VOC family protein, at 124,961 to 125,440
_RS16795
Position (kb) 123
124
125 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 123.028 kb on + strand, within ABZR87_RS16780 at 123.028 kb on + strand, within ABZR87_RS16780 at 123.029 kb on - strand, within ABZR87_RS16780 at 123.053 kb on + strand, within ABZR87_RS16780 at 123.053 kb on + strand, within ABZR87_RS16780 at 123.053 kb on + strand, within ABZR87_RS16780 at 123.053 kb on + strand, within ABZR87_RS16780 at 123.053 kb on + strand, within ABZR87_RS16780 at 123.053 kb on + strand, within ABZR87_RS16780 at 123.053 kb on + strand, within ABZR87_RS16780 at 123.053 kb on + strand, within ABZR87_RS16780 at 123.054 kb on - strand, within ABZR87_RS16780 at 123.054 kb on - strand, within ABZR87_RS16780 at 123.054 kb on - strand, within ABZR87_RS16780 at 123.054 kb on - strand, within ABZR87_RS16780 at 123.203 kb on + strand, within ABZR87_RS16780 at 123.203 kb on + strand, within ABZR87_RS16780 at 123.203 kb on + strand, within ABZR87_RS16780 at 123.203 kb on + strand, within ABZR87_RS16780 at 123.203 kb on + strand, within ABZR87_RS16780 at 123.204 kb on - strand, within ABZR87_RS16780 at 123.204 kb on - strand, within ABZR87_RS16780 at 123.204 kb on - strand, within ABZR87_RS16780 at 123.204 kb on - strand, within ABZR87_RS16780 at 123.389 kb on - strand at 123.507 kb on + strand at 123.581 kb on + strand at 123.581 kb on + strand at 123.582 kb on - strand at 123.582 kb on - strand at 123.582 kb on - strand at 123.582 kb on - strand at 123.582 kb on - strand at 123.731 kb on + strand at 123.731 kb on + strand at 123.731 kb on + strand at 123.731 kb on + strand at 123.731 kb on + strand at 123.732 kb on - strand at 123.760 kb on + strand at 123.830 kb on + strand at 123.831 kb on - strand at 123.918 kb on + strand at 123.918 kb on + strand at 124.108 kb on + strand, within ABZR87_RS16785 at 124.108 kb on + strand, within ABZR87_RS16785 at 124.108 kb on + strand, within ABZR87_RS16785 at 124.108 kb on + strand, within ABZR87_RS16785 at 124.109 kb on - strand, within ABZR87_RS16785 at 124.109 kb on - strand, within ABZR87_RS16785 at 124.109 kb on - strand, within ABZR87_RS16785 at 124.168 kb on + strand, within ABZR87_RS16785 at 124.168 kb on + strand, within ABZR87_RS16785 at 124.168 kb on + strand, within ABZR87_RS16785 at 124.168 kb on + strand, within ABZR87_RS16785 at 124.168 kb on + strand, within ABZR87_RS16785 at 124.169 kb on - strand, within ABZR87_RS16785 at 124.169 kb on - strand, within ABZR87_RS16785 at 124.214 kb on - strand, within ABZR87_RS16785 at 124.244 kb on + strand, within ABZR87_RS16785 at 124.306 kb on + strand at 124.306 kb on + strand at 124.307 kb on - strand at 124.307 kb on - strand at 124.307 kb on - strand at 124.307 kb on - strand at 124.496 kb on + strand, within ABZR87_RS16790 at 124.497 kb on - strand, within ABZR87_RS16790 at 124.497 kb on - strand, within ABZR87_RS16790 at 124.638 kb on - strand, within ABZR87_RS16790 at 124.638 kb on - strand, within ABZR87_RS16790 at 124.638 kb on - strand, within ABZR87_RS16790 at 124.638 kb on - strand, within ABZR87_RS16790 at 124.638 kb on - strand, within ABZR87_RS16790 at 124.638 kb on - strand, within ABZR87_RS16790 at 124.639 kb on + strand, within ABZR87_RS16790 at 124.639 kb on + strand, within ABZR87_RS16790 at 124.639 kb on + strand, within ABZR87_RS16790 at 124.640 kb on - strand, within ABZR87_RS16790 at 124.640 kb on - strand, within ABZR87_RS16790 at 124.640 kb on - strand, within ABZR87_RS16790 at 124.640 kb on - strand, within ABZR87_RS16790 at 124.640 kb on - strand, within ABZR87_RS16790 at 124.640 kb on - strand, within ABZR87_RS16790 at 124.671 kb on - strand, within ABZR87_RS16790 at 124.671 kb on - strand, within ABZR87_RS16790 at 124.671 kb on - strand, within ABZR87_RS16790 at 124.760 kb on + strand, within ABZR87_RS16790 at 124.760 kb on + strand, within ABZR87_RS16790 at 124.760 kb on + strand, within ABZR87_RS16790 at 124.760 kb on + strand, within ABZR87_RS16790 at 124.761 kb on - strand, within ABZR87_RS16790 at 124.772 kb on + strand at 124.773 kb on - strand at 124.773 kb on - strand at 124.773 kb on - strand at 124.773 kb on - strand at 124.948 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction root sample 5; outgrowth in LB remove 123,028 + ABZR87_RS16780 0.84 +1.4 123,028 + ABZR87_RS16780 0.84 -1.1 123,029 - ABZR87_RS16780 0.84 -0.7 123,053 + ABZR87_RS16780 0.85 -1.5 123,053 + ABZR87_RS16780 0.85 -0.3 123,053 + ABZR87_RS16780 0.85 +0.5 123,053 + ABZR87_RS16780 0.85 +1.4 123,053 + ABZR87_RS16780 0.85 +0.6 123,053 + ABZR87_RS16780 0.85 +0.5 123,053 + ABZR87_RS16780 0.85 +1.2 123,053 + ABZR87_RS16780 0.85 +0.0 123,054 - ABZR87_RS16780 0.85 +0.4 123,054 - ABZR87_RS16780 0.85 -0.5 123,054 - ABZR87_RS16780 0.85 +0.6 123,054 - ABZR87_RS16780 0.85 +0.4 123,203 + ABZR87_RS16780 0.87 +2.8 123,203 + ABZR87_RS16780 0.87 -0.7 123,203 + ABZR87_RS16780 0.87 -1.1 123,203 + ABZR87_RS16780 0.87 +0.3 123,203 + ABZR87_RS16780 0.87 +1.3 123,204 - ABZR87_RS16780 0.87 -0.0 123,204 - ABZR87_RS16780 0.87 -0.1 123,204 - ABZR87_RS16780 0.87 +0.3 123,204 - ABZR87_RS16780 0.87 +0.3 123,389 - +1.4 123,507 + -1.0 123,581 + -0.1 123,581 + -1.6 123,582 - +2.8 123,582 - -2.0 123,582 - +0.5 123,582 - +0.3 123,582 - -0.4 123,731 + -0.5 123,731 + +0.6 123,731 + -1.5 123,731 + +3.2 123,731 + +1.0 123,732 - -0.5 123,760 + +0.3 123,830 + -0.5 123,831 - -0.2 123,918 + +1.0 123,918 + +1.7 124,108 + ABZR87_RS16785 0.48 -0.8 124,108 + ABZR87_RS16785 0.48 +1.1 124,108 + ABZR87_RS16785 0.48 -0.5 124,108 + ABZR87_RS16785 0.48 -0.9 124,109 - ABZR87_RS16785 0.49 -1.0 124,109 - ABZR87_RS16785 0.49 +2.7 124,109 - ABZR87_RS16785 0.49 +0.7 124,168 + ABZR87_RS16785 0.64 +0.2 124,168 + ABZR87_RS16785 0.64 -0.0 124,168 + ABZR87_RS16785 0.64 -1.1 124,168 + ABZR87_RS16785 0.64 +1.2 124,168 + ABZR87_RS16785 0.64 -0.4 124,169 - ABZR87_RS16785 0.64 +0.4 124,169 - ABZR87_RS16785 0.64 -0.9 124,214 - ABZR87_RS16785 0.76 -1.3 124,244 + ABZR87_RS16785 0.83 +1.2 124,306 + +0.9 124,306 + -0.8 124,307 - -1.8 124,307 - +0.8 124,307 - -0.5 124,307 - -0.1 124,496 + ABZR87_RS16790 0.32 -1.1 124,497 - ABZR87_RS16790 0.32 +0.1 124,497 - ABZR87_RS16790 0.32 -1.6 124,638 - ABZR87_RS16790 0.62 +0.7 124,638 - ABZR87_RS16790 0.62 -0.3 124,638 - ABZR87_RS16790 0.62 -0.9 124,638 - ABZR87_RS16790 0.62 -1.3 124,638 - ABZR87_RS16790 0.62 -0.7 124,638 - ABZR87_RS16790 0.62 -1.0 124,639 + ABZR87_RS16790 0.62 +0.4 124,639 + ABZR87_RS16790 0.62 +0.7 124,639 + ABZR87_RS16790 0.62 +3.0 124,640 - ABZR87_RS16790 0.62 -0.3 124,640 - ABZR87_RS16790 0.62 -0.5 124,640 - ABZR87_RS16790 0.62 -2.2 124,640 - ABZR87_RS16790 0.62 -0.7 124,640 - ABZR87_RS16790 0.62 +1.0 124,640 - ABZR87_RS16790 0.62 -1.4 124,671 - ABZR87_RS16790 0.69 +0.4 124,671 - ABZR87_RS16790 0.69 -1.2 124,671 - ABZR87_RS16790 0.69 +0.7 124,760 + ABZR87_RS16790 0.87 -0.7 124,760 + ABZR87_RS16790 0.87 -0.2 124,760 + ABZR87_RS16790 0.87 -0.3 124,760 + ABZR87_RS16790 0.87 +0.3 124,761 - ABZR87_RS16790 0.88 -1.3 124,772 + +4.0 124,773 - +1.0 124,773 - -0.2 124,773 - +1.2 124,773 - +0.1 124,948 - -0.4
Or see this region's nucleotide sequence