Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS15960

Experiment: root sample 5; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS15945 and ABZR87_RS15950 overlap by 4 nucleotidesABZR87_RS15950 and ABZR87_RS15955 overlap by 20 nucleotidesABZR87_RS15955 and ABZR87_RS15960 overlap by 29 nucleotidesABZR87_RS15960 and ABZR87_RS15965 are separated by 70 nucleotidesABZR87_RS15965 and ABZR87_RS15970 are separated by 71 nucleotides ABZR87_RS15945: ABZR87_RS15945 - pyrroloquinoline quinone biosynthesis protein PqqB, at 3,370,061 to 3,370,978 _RS15945 ABZR87_RS15950: ABZR87_RS15950 - pyrroloquinoline-quinone synthase PqqC, at 3,370,975 to 3,371,685 _RS15950 ABZR87_RS15955: ABZR87_RS15955 - pyrroloquinoline quinone biosynthesis peptide chaperone PqqD, at 3,371,666 to 3,371,938 _RS15955 ABZR87_RS15960: ABZR87_RS15960 - pyrroloquinoline quinone biosynthesis protein PqqE, at 3,371,910 to 3,373,112 _RS15960 ABZR87_RS15965: ABZR87_RS15965 - c-type cytochrome, at 3,373,183 to 3,373,515 _RS15965 ABZR87_RS15970: ABZR87_RS15970 - PQQ-dependent methanol/ethanol family dehydrogenase, at 3,373,587 to 3,375,341 _RS15970 Position (kb) 3371 3372 3373 3374Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3370.975 kb on - strandat 3371.041 kb on + strandat 3371.128 kb on + strand, within ABZR87_RS15950at 3371.128 kb on + strand, within ABZR87_RS15950at 3371.128 kb on + strand, within ABZR87_RS15950at 3371.129 kb on - strand, within ABZR87_RS15950at 3371.131 kb on + strand, within ABZR87_RS15950at 3371.132 kb on - strand, within ABZR87_RS15950at 3371.273 kb on + strand, within ABZR87_RS15950at 3371.356 kb on + strand, within ABZR87_RS15950at 3371.356 kb on + strand, within ABZR87_RS15950at 3371.356 kb on + strand, within ABZR87_RS15950at 3371.357 kb on - strand, within ABZR87_RS15950at 3371.357 kb on - strand, within ABZR87_RS15950at 3371.357 kb on - strand, within ABZR87_RS15950at 3371.357 kb on - strand, within ABZR87_RS15950at 3371.357 kb on - strand, within ABZR87_RS15950at 3371.357 kb on - strand, within ABZR87_RS15950at 3371.467 kb on + strand, within ABZR87_RS15950at 3371.498 kb on - strand, within ABZR87_RS15950at 3371.563 kb on + strand, within ABZR87_RS15950at 3371.759 kb on + strand, within ABZR87_RS15955at 3371.759 kb on + strand, within ABZR87_RS15955at 3371.759 kb on + strand, within ABZR87_RS15955at 3372.057 kb on + strand, within ABZR87_RS15960at 3372.103 kb on + strand, within ABZR87_RS15960at 3372.103 kb on + strand, within ABZR87_RS15960at 3372.103 kb on + strand, within ABZR87_RS15960at 3372.103 kb on + strand, within ABZR87_RS15960at 3372.104 kb on - strand, within ABZR87_RS15960at 3372.104 kb on - strand, within ABZR87_RS15960at 3372.104 kb on - strand, within ABZR87_RS15960at 3372.216 kb on + strand, within ABZR87_RS15960at 3372.216 kb on + strand, within ABZR87_RS15960at 3372.217 kb on - strand, within ABZR87_RS15960at 3372.293 kb on + strand, within ABZR87_RS15960at 3372.294 kb on - strand, within ABZR87_RS15960at 3372.297 kb on - strand, within ABZR87_RS15960at 3372.493 kb on - strand, within ABZR87_RS15960at 3372.517 kb on - strand, within ABZR87_RS15960at 3372.517 kb on - strand, within ABZR87_RS15960at 3372.519 kb on + strand, within ABZR87_RS15960at 3372.520 kb on - strand, within ABZR87_RS15960at 3372.520 kb on - strand, within ABZR87_RS15960at 3372.600 kb on + strand, within ABZR87_RS15960at 3372.636 kb on + strand, within ABZR87_RS15960at 3372.636 kb on + strand, within ABZR87_RS15960at 3372.637 kb on - strand, within ABZR87_RS15960at 3372.652 kb on - strand, within ABZR87_RS15960at 3372.916 kb on - strand, within ABZR87_RS15960at 3373.110 kb on + strandat 3373.111 kb on - strandat 3373.111 kb on - strandat 3373.215 kb on - strandat 3373.337 kb on + strand, within ABZR87_RS15965at 3373.337 kb on + strand, within ABZR87_RS15965at 3373.337 kb on + strand, within ABZR87_RS15965at 3373.338 kb on - strand, within ABZR87_RS15965at 3373.338 kb on - strand, within ABZR87_RS15965at 3373.504 kb on - strandat 3373.504 kb on - strandat 3373.504 kb on - strandat 3373.945 kb on + strand, within ABZR87_RS15970at 3373.945 kb on + strand, within ABZR87_RS15970at 3373.945 kb on + strand, within ABZR87_RS15970at 3373.945 kb on + strand, within ABZR87_RS15970at 3373.946 kb on - strand, within ABZR87_RS15970at 3373.988 kb on - strand, within ABZR87_RS15970at 3373.988 kb on - strand, within ABZR87_RS15970at 3374.005 kb on + strand, within ABZR87_RS15970at 3374.005 kb on + strand, within ABZR87_RS15970at 3374.056 kb on + strand, within ABZR87_RS15970at 3374.056 kb on + strand, within ABZR87_RS15970at 3374.056 kb on + strand, within ABZR87_RS15970at 3374.057 kb on - strand, within ABZR87_RS15970at 3374.080 kb on + strand, within ABZR87_RS15970

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Per-strain Table

Position Strand Gene LocusTag Fraction root sample 5; outgrowth in LB
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3,370,975 - -1.3
3,371,041 + -2.1
3,371,128 + ABZR87_RS15950 0.22 -2.3
3,371,128 + ABZR87_RS15950 0.22 +0.5
3,371,128 + ABZR87_RS15950 0.22 -1.5
3,371,129 - ABZR87_RS15950 0.22 -0.1
3,371,131 + ABZR87_RS15950 0.22 -0.0
3,371,132 - ABZR87_RS15950 0.22 +0.6
3,371,273 + ABZR87_RS15950 0.42 -0.8
3,371,356 + ABZR87_RS15950 0.54 -0.3
3,371,356 + ABZR87_RS15950 0.54 +0.5
3,371,356 + ABZR87_RS15950 0.54 -1.5
3,371,357 - ABZR87_RS15950 0.54 +0.5
3,371,357 - ABZR87_RS15950 0.54 +0.5
3,371,357 - ABZR87_RS15950 0.54 -0.9
3,371,357 - ABZR87_RS15950 0.54 -0.3
3,371,357 - ABZR87_RS15950 0.54 -1.4
3,371,357 - ABZR87_RS15950 0.54 -1.0
3,371,467 + ABZR87_RS15950 0.69 -0.0
3,371,498 - ABZR87_RS15950 0.74 -1.4
3,371,563 + ABZR87_RS15950 0.83 -1.8
3,371,759 + ABZR87_RS15955 0.34 -0.3
3,371,759 + ABZR87_RS15955 0.34 +0.4
3,371,759 + ABZR87_RS15955 0.34 -1.7
3,372,057 + ABZR87_RS15960 0.12 -0.1
3,372,103 + ABZR87_RS15960 0.16 +2.2
3,372,103 + ABZR87_RS15960 0.16 +0.3
3,372,103 + ABZR87_RS15960 0.16 +0.1
3,372,103 + ABZR87_RS15960 0.16 -1.1
3,372,104 - ABZR87_RS15960 0.16 +1.0
3,372,104 - ABZR87_RS15960 0.16 +0.6
3,372,104 - ABZR87_RS15960 0.16 -0.4
3,372,216 + ABZR87_RS15960 0.25 -2.0
3,372,216 + ABZR87_RS15960 0.25 +2.8
3,372,217 - ABZR87_RS15960 0.26 +0.4
3,372,293 + ABZR87_RS15960 0.32 -0.3
3,372,294 - ABZR87_RS15960 0.32 +0.2
3,372,297 - ABZR87_RS15960 0.32 +0.5
3,372,493 - ABZR87_RS15960 0.48 +1.5
3,372,517 - ABZR87_RS15960 0.50 +0.5
3,372,517 - ABZR87_RS15960 0.50 +1.0
3,372,519 + ABZR87_RS15960 0.51 -0.4
3,372,520 - ABZR87_RS15960 0.51 +0.8
3,372,520 - ABZR87_RS15960 0.51 +0.2
3,372,600 + ABZR87_RS15960 0.57 -2.0
3,372,636 + ABZR87_RS15960 0.60 -2.0
3,372,636 + ABZR87_RS15960 0.60 +0.1
3,372,637 - ABZR87_RS15960 0.60 -1.2
3,372,652 - ABZR87_RS15960 0.62 +0.2
3,372,916 - ABZR87_RS15960 0.84 -0.5
3,373,110 + -1.1
3,373,111 - +1.4
3,373,111 - -0.5
3,373,215 - +0.1
3,373,337 + ABZR87_RS15965 0.46 -0.2
3,373,337 + ABZR87_RS15965 0.46 -1.2
3,373,337 + ABZR87_RS15965 0.46 -1.1
3,373,338 - ABZR87_RS15965 0.47 +1.0
3,373,338 - ABZR87_RS15965 0.47 +0.4
3,373,504 - -0.8
3,373,504 - -1.1
3,373,504 - +1.3
3,373,945 + ABZR87_RS15970 0.20 +3.4
3,373,945 + ABZR87_RS15970 0.20 -0.7
3,373,945 + ABZR87_RS15970 0.20 +2.0
3,373,945 + ABZR87_RS15970 0.20 -0.2
3,373,946 - ABZR87_RS15970 0.20 -0.2
3,373,988 - ABZR87_RS15970 0.23 +0.9
3,373,988 - ABZR87_RS15970 0.23 -0.6
3,374,005 + ABZR87_RS15970 0.24 -1.1
3,374,005 + ABZR87_RS15970 0.24 -1.5
3,374,056 + ABZR87_RS15970 0.27 -0.4
3,374,056 + ABZR87_RS15970 0.27 -1.2
3,374,056 + ABZR87_RS15970 0.27 -2.3
3,374,057 - ABZR87_RS15970 0.27 -0.5
3,374,080 + ABZR87_RS15970 0.28 -1.7

Or see this region's nucleotide sequence